CX290243

Overview
NameCX290243
Unique NameCX290243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig275 contig Ccv1_Contig275:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 81/236 (34.32%), Postives = 128/236 (54.24%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYH------RQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVL---------RQQEIARQQQELAMENSV--------SAEIDYQRENHHDYAYHVQPIQPNLQER 645
            GRG++E+KRIEN  NRQVT+SKRRNG+LKKA E++VLCDA+V+LII++S GK++++   S  +   LE+Y       + S   L   + ++  +E+ ++K + + +Q   RHL GED+  L+ KEL  LE  LE  L   R +++    E++E +R+  + + E +  LK  L         R  + A   Q   +EN          SA +D +      Y +   P + N  +R
Sbjct:    2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF--GSAGITKTLERYQHCCYNAQDSNNAL--SETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHSAAMDSEPTLQIGYPHQFVPAEANTIQR 233          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 69/194 (35.57%), Postives = 117/194 (60.31%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEI 573
            GRGKIEIKRIEN +NRQVT+ KRRNG+LKKA E++VLCDA+V+LI+++S G++++Y + S      +E+Y +      +   + +   +    E  +++ +   +Q + R+  GE +++LN ++L  LE  +E G+  IR K++E    ++E M+K    +   + YL+  + + E  R QQ   M  S S ++
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKAT--IERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETE--RSQQMNLMPGSSSYDL 207          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 71/184 (38.59%), Postives = 116/184 (63.04%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS--GRRLWDPKHENLSN---EIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYL--KFVLRQQEIARQQQ 537
            GRG++++KRIEN  NRQVT+SKRR+G+LKKA EI+VLCDA+V LI++++ GK+ +Y + S  +  +LE+Y R S   ++L    H +  +   E  ++K   + +Q   +   GED+ SLN KEL  LE  L + L  IR +++    E +  ++K  + ++E++N L  K   R++E+ +Q Q
Sbjct:    2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDS-CMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVEQQNQ 184          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.789e-25
Identity = 76/216 (35.19%), Postives = 130/216 (60.19%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQS----GRRLWDPKHE---NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYAYHVQPIQPN 633
            GRG++E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+V+LII+++ GK++++CS   S+   LE+Y + S       + + ++E   +  NE  ++K   + +Q   R+L GED+ +L  KEL  LE  L++ L  IR  +++ M      +++  +M+ E +  L+   R+ E + Q      E+  +  + Y+R++ H     VQ + P+
Sbjct:    2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-GQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLR---RKLEESNQLHGQVWEHGATL-LGYERQSPH----AVQQVPPH 208          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.789e-25
Identity = 70/205 (34.15%), Postives = 128/205 (62.44%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----QSGRRLWDPKHENLSNEIERIKRENDRMQ-IKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVS-AEIDYQRENHHD 600
            GRGKIEIKRIEN +NRQVT+ KRRNG+LKKA E++VLCDA+V+LI+++S G++++Y   + S+   +E+Y +      +   + +   ++   E  +++++   +Q    R + G+ I++++ ++L  +E+ LE G+  IR +++E    ++E M+K    ++ ++ YL+  + + E  R QQ L M  + S +E D+   N +D
Sbjct:    2 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA--NNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENE--RGQQPLNMMGAASTSEYDHMVNNPYD 202          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25
Identity = 75/204 (36.76%), Postives = 127/204 (62.25%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSG--RRLWDPKHENL---SNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYLKFVLRQQ--EIARQQQELAME--NSVSAEIDYQREN 591
            R KI+I++I+NA+ RQVT+SKRR G+ KKA+E++VLCDA V+LII++S+GK+ ++C  S+S+ ++LE+++ QS    +L  P  E     +++  R+ +E      +LR + GE++  L+ +EL  LE ALE GL  + + +S+K+     E  +K  ++M+E        LRQQ  ++  + + L M+  N+V A    + EN
Sbjct:    3 REKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFC--SSSMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKR-----LRQQGTQLTEENERLGMQICNNVHAHGGAESEN 199          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.986e-25
Identity = 63/147 (42.86%), Postives = 99/147 (67.35%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLW-----DPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM 444
            GRG++E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+VSLI++++ GK++++CS S +++  LE+Y + S   +        + EN   E  ++K   + +Q + R+L GED+  LN KEL  LE  L+  L  +R  +++ M
Sbjct:    2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTS-NMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYM 147          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.986e-25
Identity = 62/147 (42.18%), Postives = 100/147 (68.03%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLW-----DPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM 444
            GRG++E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+V+LII+++ GK++++CS S++++  L++Y + S   +        + EN   E  ++K   + +Q + R+L GED+  LN KEL  LE  L+  L  +R  +++ M
Sbjct:    2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYM 147          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 71/205 (34.63%), Postives = 124/205 (60.49%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPST--SLVDILEQYH---RQSGRRLWDPK-HENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQ----QELAMENSVSAEIDYQREN 591
            GRG+IEIKRIEN ++RQVT+ KRRNG+LKKA E++VLCDA+V+LI+++S G++++Y + +   + +D  ++ H     SG  L +    +    E  +++ +   +Q   +HL G+++S+L+ KEL  LE  LE G+  IR +++E    ++  M K    ++ ++  L+  + ++E   QQ    +  AME   +A    Q++N
Sbjct:    2 GRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQQLQQVTVARSAAMELQAAAAAQQQQQN 206          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 60/199 (30.15%), Postives = 116/199 (58.29%), Query Frame = 1
Query:   94 GILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHD------------YAYHVQPIQPNLQE 642
            G+LKKA+E+ +LCDA++ +II++SSGKM ++ SP  S+ +I+++Y + SG       ++ +  EI R+K E D++Q  +RH  GED++SL   E++ LE  LE  +  +R ++     ++++ +R+   M+EE++  L  V++    A  +Q++   + +     + +++H              + + +QP QPNLQ+
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQDHHAASMEQKMVDPSMLDHFGVFYQDDHQAARSSMLQLSPQLHPFRLQPAQPNLQD 200          
The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MADS6_ORYSJ1.049e-2534.32MADS-box transcription factor 6 OS=Oryza sativa su... [more]
AG_PETHY1.049e-2535.57Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AGL8_SOLCO1.049e-2538.59Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MADS8_ORYSJ1.789e-2535.19MADS-box transcription factor 8 OS=Oryza sativa su... [more]
MADS3_ORYSJ1.789e-2534.15MADS-box transcription factor 3 OS=Oryza sativa su... [more]
SVP_ARATH3.052e-2536.76MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
SEP2_ARATH3.986e-2542.86Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
SEP1_ARATH3.986e-2542.18Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MAD13_ORYSJ6.800e-2534.63MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AP32_ASAEU6.800e-2530.15MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02022B01SK IF1 Citrus clementina cDNA clone C02022B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bp
CGAATTCGGCACGAGGGGGGAAGAGGCAAGATTGAGATCAAGAGAATAGA
GAACGCAAGCAACAGGCAGGTGACTTATTCAAAGAGAAGAAATGGAATCC
TCAAGAAGGCAAAGGAGATCACTGTGCTGTGTGATGCTAAAGTTTCTCTC
ATCATTTACGCTAGCTCTGGCAAGATGCACGATTACTGTAGCCCTTCTAC
TTCGTTGGTTGATATTTTGGAGCAATATCACCGGCAGTCAGGGAGGAGAT
TGTGGGATCCCAAGCATGAGAACCTCAGCAATGAAATTGAAAGAATCAAG
AGAGAGAATGATAGAATGCAGATCAAGCTCAGGCACCTAAATGGGGAGGA
TATCTCATCTCTGAACCCTAAAGAACTCATAGCCTTAGAGGATGCCCTCG
AAAATGGTCTTGTCAGCATCCGCGACAAACAGAGTGAAAAGATGGAAACG
ATGAGGAAAAATGGAAAAATGATGGAGGAGGAGCATAATTACCTCAAATT
TGTTCTGAGGCAACAGGAGATTGCGAGACAGCAACAGGAGCTTGCTATGG
AGAATAGTGTGAGTGCTGAGATTGATTATCAAAGAGAGAATCATCATGAC
TATGCCTACCATGTGCAGCCTATTCAGCCTAATCTTCAAGAAAGGATCTA
ATAGCACTTTCGGATTCCTTTCTTGAAAGCACTTTAAACATTTTAGGTTC
TGTGATGGAATTAGTGACCTCGATATATATTAATGAAATTACCTCGTTAT
back to top