CX290243

Overview
NameCX290243
Unique NameCX290243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig275 contig Ccv1_Contig275:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 69/185 (37.30%), Postives = 110/185 (59.46%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLS----------NEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQEL 543
            GRG++E+KRIE   NRQVT++KRRNG+LKKA E++VLCDA+V+LII+++ GK++++CS S+S++  LE+Y + +    +     N+S           E  ++K   + +Q   R+L GED+  LN KEL +LE  L+  L  IR  +++ M     + +  E   N     L+Q+ +   Q  L
Sbjct:    2 GRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLKTLERYQKCN----YGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGSQLNL 181          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 72/235 (30.64%), Postives = 134/235 (57.02%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKH--ENLSNEIE---RIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIA------------RQQQELAMENSVSAEIDYQRENHHDYAYHVQPIQPNLQERI**HF 660
            GRGK+E+KRIEN  NRQVT++KRRNG+LKKA E++VLCDA+++L+I+++ GK++++CS  + +   +++Y + S   + DP    ++L ++ +   ++K   + +Q   RHL GE++S ++  EL  LE  ++  L  IR  ++    +++  ++   +M+ E +  L+  L   + A            +QQQ    +  +S+   YQ       A   +P+Q N+  ++  H+
Sbjct:    2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATM-DPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSS---YQSNPPIQEAGFFKPLQGNVALQMSSHY 232          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.881e-25
Identity = 68/194 (35.05%), Postives = 119/194 (61.34%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR--QSGRRLWDPKHEN--LSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYL--KFVLRQQEIARQQQELAMENSVSAE 570
            GRGKI IKRI+N  NRQVT+SKRR G++KKA+E+ +LCDA V LI+++ +G+++D+   S+S+  I+E+Y    +   RL +P  E      E+  ++++   +    R L GE+IS+   ++L  L++ +E  L SIR+K+    +E++  + + G ++++E++ L  KF +  Q      ++L    S S+E
Sbjct:    2 GRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF--SSSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKKFNIAHQRNIELHKKLNSGESTSSE 193          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.881e-25
Identity = 62/183 (33.88%), Postives = 111/183 (60.66%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQE 540
            GRGKIEIKRIEN +NRQVT+ KRRNG+LKKA E++VLCDA+V+L+++++ G++++Y + S      +E+Y +      +   + +   +    E  +++ +   +  + R++ GE ++ +  KEL  LE  +E G+  IR K++E    ++E M+K    +   + YL+  + + E A+ Q +
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKAT--IERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQ 198          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.160e-24
Identity = 65/178 (36.52%), Postives = 110/178 (61.80%), Query Frame = 1
Query:   13 EGGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQE 519
            + GRGKIEIKRIEN +NRQVT+ KRRNG+LKKA E++VLCDA+V+LI+++S G++++Y   + S+   +E+Y +      +   + +   +    E  +++++   +Q   R L GE I S++PKEL  LE  LE  +  IR K++E    +++ M+K    +  ++  L+  + + E
Sbjct:   16 KSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENE 191          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-24
Identity = 66/182 (36.26%), Postives = 114/182 (62.64%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLS-----NEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQ 537
            GRGKIEIKRIEN++NRQVT+ KRRNG+LKKA E++VLCDA+V+LI++++ G++++Y   + ++   +E+Y +           + ++      E  +++++   +Q   R+L G+ +SSL+ KEL  +E+ LE  +  IR K+ E    ++E  +K    ++ E+ YL+   +  E+ R QQ
Sbjct:    2 GRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA--NNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLR--TKVAEVERYQQ 179          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.756e-24
Identity = 64/180 (35.56%), Postives = 111/180 (61.67%), Query Frame = 1
Query:    7 RHEGGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSE----KMETMRKNGKMMEEEHNYLKFVLRQQE 519
            + + GRGKIEIKRIEN +NRQVT+ KRRNG+LKKA E++VLCDA+V+LI+++S G++++Y   + S+   +E+Y +      +   + +   +    E  +++++   +Q   R L GE I S++PKEL  LE  L+  +  IR K++E    +++ M+K    +  ++  L+  + + E
Sbjct:   14 QRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--SNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENE 191          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 64/167 (38.32%), Postives = 107/167 (64.07%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHEN---LSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLK 498
            GRGK+E+KRIEN   RQVT+SKR++G+LKKA E++VLCDA+VSLII+++ GK++++ +        +E+Y+R     L +   E+   L  E+ ++K + + +    R+L GED+  ++ KEL  LE  LE  L + R +++    E+ME +R+  + + + +N LK
Sbjct:    2 GRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRT--IERYYRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLK 166          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 71/217 (32.72%), Postives = 123/217 (56.68%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYH--RQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN------------SVSAEIDYQRENHHDYAYHVQPIQ 627
            GRGK+E+KRIEN  +RQVT++KRRNG+LKKA E+++LCDA+V+LII++  G++ ++ S S+ +   LE+Y     + +    P++E    E  ++K   + +Q   R++ GED+  L+ KEL  LE+ +E  L  IR ++++ +     + K  E++   L      +++ ++ QE + EN            S S+ +   + +HH    H  P Q
Sbjct:    2 GRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEF-SSSSCMYKTLERYRSCNYNSQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDL-----NKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQ 212          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 71/217 (32.72%), Postives = 123/217 (56.68%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYH--RQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN------------SVSAEIDYQRENHHDYAYHVQPIQ 627
            GRGK+E+KRIEN  +RQVT++KRRNG+LKKA E+++LCDA+V+LII++  G++ ++ S S+ +   LE+Y     + +    P++E    E  ++K   + +Q   R++ GED+  L+ KEL  LE+ +E  L  IR ++++ +     + K  E++   L      +++ ++ QE + EN            S S+ +   + +HH    H  P Q
Sbjct:    2 GRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEF-SSSSCMYKTLERYRSCNYNSQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDL-----NKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQ 212          
The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AGL9_SOLLC6.800e-2537.30Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
AGL3_ARATH6.800e-2530.64Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD25_ORYSJ8.881e-2535.05MADS-box transcription factor 25 OS=Oryza sativa s... [more]
AG_SOLLC8.881e-2533.88Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_ARATH1.160e-2436.52Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL11_ARATH1.515e-2436.26Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AG_BRANA5.756e-2435.56Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AGL13_ARATH7.518e-2438.32Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
MADS1_ORYSJ9.819e-2432.72MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI9.819e-2432.72MADS-box transcription factor 1 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC02022B01SK IF1 Citrus clementina cDNA clone C02022B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bp
CGAATTCGGCACGAGGGGGGAAGAGGCAAGATTGAGATCAAGAGAATAGA
GAACGCAAGCAACAGGCAGGTGACTTATTCAAAGAGAAGAAATGGAATCC
TCAAGAAGGCAAAGGAGATCACTGTGCTGTGTGATGCTAAAGTTTCTCTC
ATCATTTACGCTAGCTCTGGCAAGATGCACGATTACTGTAGCCCTTCTAC
TTCGTTGGTTGATATTTTGGAGCAATATCACCGGCAGTCAGGGAGGAGAT
TGTGGGATCCCAAGCATGAGAACCTCAGCAATGAAATTGAAAGAATCAAG
AGAGAGAATGATAGAATGCAGATCAAGCTCAGGCACCTAAATGGGGAGGA
TATCTCATCTCTGAACCCTAAAGAACTCATAGCCTTAGAGGATGCCCTCG
AAAATGGTCTTGTCAGCATCCGCGACAAACAGAGTGAAAAGATGGAAACG
ATGAGGAAAAATGGAAAAATGATGGAGGAGGAGCATAATTACCTCAAATT
TGTTCTGAGGCAACAGGAGATTGCGAGACAGCAACAGGAGCTTGCTATGG
AGAATAGTGTGAGTGCTGAGATTGATTATCAAAGAGAGAATCATCATGAC
TATGCCTACCATGTGCAGCCTATTCAGCCTAATCTTCAAGAAAGGATCTA
ATAGCACTTTCGGATTCCTTTCTTGAAAGCACTTTAAACATTTTAGGTTC
TGTGATGGAATTAGTGACCTCGATATATATTAATGAAATTACCTCGTTAT
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