CX290243

Overview
NameCX290243
Unique NameCX290243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig275 contig Ccv1_Contig275:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 69/190 (36.32%), Postives = 115/190 (60.53%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKL-------RHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAE 570
            RGK ++KRIEN ++RQVT+SKRRNG+LKKA E++VLCDA+V+LI+++  GK++++ S ST     +E+Y   +   +    ++ +  +IE++K + D +  KL       R L GE +   + +EL +LE  LE  L+SIR ++++ +E   +  K+ E+E    K     +E  + Q  L+   +V AE
Sbjct:    3 RGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQ--KTIERYRTYTKENI---GNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLE--EQVAKLREKEMKLRKDNEELREKCKNQPPLSAPLTVRAE 185          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23
Identity = 68/178 (38.20%), Postives = 107/178 (60.11%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDI-LEQYHRQSGRRLWDPKHENLS--NEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQEL 543
            GRGKIEIKRIENA++RQVT+SKRR G+LKKA E++VLCDA+V++I+++ SGK+ ++ S S     +    Y   S     + K EN     E++ +K E   +Q K  H+ G+ ++ L+ KEL  LE  L   L+S+R+++   +    +  ++ E+     +  L  + + RQ QEL
Sbjct:    2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQ-----RAELENETLRRQVQEL 174          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 66/198 (33.33%), Postives = 119/198 (60.10%), Query Frame = 1
Query:   16 GGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGR-RLWDPKHENLSNE----IERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEK----METMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQ 582
            G R +I I+RI+N + RQVT+SKRR G+ KKA+E+++LCDA+V L++++++GK+  +   STS+  I+++Y+  S   +  +P   +L  E      R+K E     ++LR + GE++  LN ++L  LE +LE+GL S+   +S+K    ++ + +    + EE+  LK    Q +++R  +   M+    +EI Y+
Sbjct:   20 GKRERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFA--STSMEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLK---EQLQVSRMSRMEEMQPGPDSEIVYE 212          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 65/173 (37.57%), Postives = 103/173 (59.54%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENL---SNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYLKFVLRQQ 516
            R KI+IK+I+N++ RQVT+SKRR G+ KKA+E++VLCDA V+LII++S+GK+ DY S S   +      H ++  +L  P  E     ++   R+ +E      +LR + GE++  LN +EL  LE +LE GL  + +++ +K+     +  +K   +MEE        LRQQ
Sbjct:    3 REKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEK-----LRQQ 170          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 69/203 (33.99%), Postives = 126/203 (62.07%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQY-----HRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYL--KFVLRQQEI-ARQQQELA----MENSVSAEIDYQ 582
            RGK ++KRIENA++RQVT+SKRRNG+LKKA E++VLCDA+VSLII++  GK++++   S+++ D +++Y      R S + + +   ++L  E   + ++ ++++   R L GE I + + +EL  +E  LE  +  IR +++    E++E +++  K +  E+  L  K+   + E+ + + QE       E+S S+E++ Q
Sbjct:    3 RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFA--SSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWSNKNQESTGRGDEESSPSSEVETQ 203          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 66/194 (34.02%), Postives = 119/194 (61.34%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLN-------GEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSA 567
            GRGKI I+RI+N+++RQVT+SKRRNG+LKKAKE+++LCDA+V L++++S+G+++++   ST++  ++++Y       L      N ++EI+  +RE   ++ +L +L        GE++S L  ++L  LE+ LE  L +IR ++      ++E +   G ++ +E+  L   L        QQ+L + N + A
Sbjct:    2 GRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF--SSTNMKTVIDRYTNAKEELLGG----NATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSLN----VMSQQKLELYNKLQA 185          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23
Identity = 60/162 (37.04%), Postives = 104/162 (64.20%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQ----SGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYL 495
            RGK E+KRIENA++RQVT+SKRRNG+LKKA E++VLCDA+V+LII++  GK++++ S S+S+   +E+Y ++          +   +   +E   + R+ + ++I  R + GE + + + +EL  LE+ L+  L+ IR K+ + +    +  K+ E+E N +
Sbjct:    3 RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SSSSSIPKTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLR--EETEKLKEKERNLI 161          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.418e-22
Identity = 64/185 (34.59%), Postives = 110/185 (59.46%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHE----NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAM 549
            GR K+EIKRIEN S+RQVT+SKRRNG+++KA++++VLCDA V+L++ ++SGK++ + S   +LV IL++Y +Q    L    H+    N  +  E ++  + +       L G ++ +++   L+ LE+ LE  L   R K++E M    E +++  KM++EE+  L   +        + E+ M
Sbjct:    2 GRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSF-SSGDNLVKILDRYGKQHADDLKALDHQSKALNYGSHYELLELVDSK-------LVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGAEAEMEM 178          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 68/190 (35.79%), Postives = 114/190 (60.00%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQY----HRQSGRRLWDPKHENLSN--EIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 555
            GRGK+E+KRIEN  +RQVT++KRRNG+LKKA E++VLCDA+V+LII+++ G++ ++ S S+ +   LE+Y    +  +           LSN  E  ++K   + +Q   R+L GED+  L+ KEL  LE+ +E  L++IR  +++++     E  RK  ++ +            +++ R+ QE + EN
Sbjct:    2 GRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEF-STSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQD----------ANKDLKRKIQETSGEN 180          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 68/190 (35.79%), Postives = 114/190 (60.00%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQY----HRQSGRRLWDPKHENLSN--EIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 555
            GRGK+E+KRIEN  +RQVT++KRRNG+LKKA E++VLCDA+V+LII+++ G++ ++ S S+ +   LE+Y    +  +           LSN  E  ++K   + +Q   R+L GED+  L+ KEL  LE+ +E  L++IR  +++++     E  RK  ++ +            +++ R+ QE + EN
Sbjct:    2 GRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEF-STSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQD----------ANKDLKRKIQETSGEN 180          
The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MAD50_ORYSJ9.819e-2436.32MADS-box transcription factor 50 OS=Oryza sativa s... [more]
AGL15_BRANA1.282e-2338.20Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
MAD47_ORYSJ2.187e-2333.33MADS-box transcription factor 47 OS=Oryza sativa s... [more]
JOIN_SOLLC2.187e-2337.57MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
SOC1_ARATH6.364e-2333.99MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD57_ORYSJ6.364e-2334.02MADS-box transcription factor 57 OS=Oryza sativa s... [more]
AGL14_ARATH8.312e-2337.04Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
FLC_ARATH2.418e-2234.59MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MADS5_ORYSJ5.388e-2235.79MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI5.388e-2235.79MADS-box transcription factor 5 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC02022B01SK IF1 Citrus clementina cDNA clone C02022B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bp
CGAATTCGGCACGAGGGGGGAAGAGGCAAGATTGAGATCAAGAGAATAGA
GAACGCAAGCAACAGGCAGGTGACTTATTCAAAGAGAAGAAATGGAATCC
TCAAGAAGGCAAAGGAGATCACTGTGCTGTGTGATGCTAAAGTTTCTCTC
ATCATTTACGCTAGCTCTGGCAAGATGCACGATTACTGTAGCCCTTCTAC
TTCGTTGGTTGATATTTTGGAGCAATATCACCGGCAGTCAGGGAGGAGAT
TGTGGGATCCCAAGCATGAGAACCTCAGCAATGAAATTGAAAGAATCAAG
AGAGAGAATGATAGAATGCAGATCAAGCTCAGGCACCTAAATGGGGAGGA
TATCTCATCTCTGAACCCTAAAGAACTCATAGCCTTAGAGGATGCCCTCG
AAAATGGTCTTGTCAGCATCCGCGACAAACAGAGTGAAAAGATGGAAACG
ATGAGGAAAAATGGAAAAATGATGGAGGAGGAGCATAATTACCTCAAATT
TGTTCTGAGGCAACAGGAGATTGCGAGACAGCAACAGGAGCTTGCTATGG
AGAATAGTGTGAGTGCTGAGATTGATTATCAAAGAGAGAATCATCATGAC
TATGCCTACCATGTGCAGCCTATTCAGCCTAATCTTCAAGAAAGGATCTA
ATAGCACTTTCGGATTCCTTTCTTGAAAGCACTTTAAACATTTTAGGTTC
TGTGATGGAATTAGTGACCTCGATATATATTAATGAAATTACCTCGTTAT
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