CX290243
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24 Identity = 69/190 (36.32%), Postives = 115/190 (60.53%), Query Frame = 1 Query: 22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKL-------RHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAE 570 RGK ++KRIEN ++RQVT+SKRRNG+LKKA E++VLCDA+V+LI+++ GK++++ S ST +E+Y + + ++ + +IE++K + D + KL R L GE + + +EL +LE LE L+SIR ++++ +E + K+ E+E K +E + Q L+ +V AE Sbjct: 3 RGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQ--KTIERYRTYTKENI---GNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLE--EQVAKLREKEMKLRKDNEELREKCKNQPPLSAPLTVRAE 185
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.282e-23 Identity = 68/178 (38.20%), Postives = 107/178 (60.11%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDI-LEQYHRQSGRRLWDPKHENLS--NEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQEL 543 GRGKIEIKRIENA++RQVT+SKRR G+LKKA E++VLCDA+V++I+++ SGK+ ++ S S + Y S + K EN E++ +K E +Q K H+ G+ ++ L+ KEL LE L L+S+R+++ + + ++ E+ + L + + RQ QEL Sbjct: 2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQ-----RAELENETLRRQVQEL 174
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23 Identity = 66/198 (33.33%), Postives = 119/198 (60.10%), Query Frame = 1 Query: 16 GGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGR-RLWDPKHENLSNE----IERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEK----METMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQ 582 G R +I I+RI+N + RQVT+SKRR G+ KKA+E+++LCDA+V L++++++GK+ + STS+ I+++Y+ S + +P +L E R+K E ++LR + GE++ LN ++L LE +LE+GL S+ +S+K ++ + + + EE+ LK Q +++R + M+ +EI Y+ Sbjct: 20 GKRERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFA--STSMEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLK---EQLQVSRMSRMEEMQPGPDSEIVYE 212
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23 Identity = 65/173 (37.57%), Postives = 103/173 (59.54%), Query Frame = 1 Query: 22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENL---SNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYLKFVLRQQ 516 R KI+IK+I+N++ RQVT+SKRR G+ KKA+E++VLCDA V+LII++S+GK+ DY S S + H ++ +L P E ++ R+ +E +LR + GE++ LN +EL LE +LE GL + +++ +K+ + +K +MEE LRQQ Sbjct: 3 REKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEK-----LRQQ 170
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23 Identity = 69/203 (33.99%), Postives = 126/203 (62.07%), Query Frame = 1 Query: 22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQY-----HRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYL--KFVLRQQEI-ARQQQELA----MENSVSAEIDYQ 582 RGK ++KRIENA++RQVT+SKRRNG+LKKA E++VLCDA+VSLII++ GK++++ S+++ D +++Y R S + + + ++L E + ++ ++++ R L GE I + + +EL +E LE + IR +++ E++E +++ K + E+ L K+ + E+ + + QE E+S S+E++ Q Sbjct: 3 RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFA--SSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWSNKNQESTGRGDEESSPSSEVETQ 203
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23 Identity = 66/194 (34.02%), Postives = 119/194 (61.34%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLN-------GEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSA 567 GRGKI I+RI+N+++RQVT+SKRRNG+LKKAKE+++LCDA+V L++++S+G+++++ ST++ ++++Y L N ++EI+ +RE ++ +L +L GE++S L ++L LE+ LE L +IR ++ ++E + G ++ +E+ L L QQ+L + N + A Sbjct: 2 GRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEF--SSTNMKTVIDRYTNAKEELLGG----NATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSLN----VMSQQKLELYNKLQA 185
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23 Identity = 60/162 (37.04%), Postives = 104/162 (64.20%), Query Frame = 1 Query: 22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQ----SGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYL 495 RGK E+KRIENA++RQVT+SKRRNG+LKKA E++VLCDA+V+LII++ GK++++ S S+S+ +E+Y ++ + + +E + R+ + ++I R + GE + + + +EL LE+ L+ L+ IR K+ + + + K+ E+E N + Sbjct: 3 RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SSSSSIPKTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLR--EETEKLKEKERNLI 161
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.418e-22 Identity = 64/185 (34.59%), Postives = 110/185 (59.46%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHE----NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAM 549 GR K+EIKRIEN S+RQVT+SKRRNG+++KA++++VLCDA V+L++ ++SGK++ + S +LV IL++Y +Q L H+ N + E ++ + + L G ++ +++ L+ LE+ LE L R K++E M E +++ KM++EE+ L + + E+ M Sbjct: 2 GRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSF-SSGDNLVKILDRYGKQHADDLKALDHQSKALNYGSHYELLELVDSK-------LVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQMENNHHVGAEAEMEM 178
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22 Identity = 68/190 (35.79%), Postives = 114/190 (60.00%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQY----HRQSGRRLWDPKHENLSN--EIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 555 GRGK+E+KRIEN +RQVT++KRRNG+LKKA E++VLCDA+V+LII+++ G++ ++ S S+ + LE+Y + + LSN E ++K + +Q R+L GED+ L+ KEL LE+ +E L++IR +++++ E RK ++ + +++ R+ QE + EN Sbjct: 2 GRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEF-STSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQD----------ANKDLKRKIQETSGEN 180
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22 Identity = 68/190 (35.79%), Postives = 114/190 (60.00%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQY----HRQSGRRLWDPKHENLSN--EIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM-----ETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 555 GRGK+E+KRIEN +RQVT++KRRNG+LKKA E++VLCDA+V+LII+++ G++ ++ S S+ + LE+Y + + LSN E ++K + +Q R+L GED+ L+ KEL LE+ +E L++IR +++++ E RK ++ + +++ R+ QE + EN Sbjct: 2 GRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEF-STSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQD----------ANKDLKRKIQETSGEN 180 The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bpback to top |