CX290243

Overview
NameCX290243
Unique NameCX290243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig275 contig Ccv1_Contig275:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 60/183 (32.79%), Postives = 116/183 (63.39%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQ--SGRRLWDPKHE--NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 555
            GRGKI I+RI+++++RQVT+SKRR G++KKAKE+ +LCDA+V LII++S+GK++D+   S+S+  ++++Y++     ++L +P  E      E   +++E   +Q   R + GE ++ L+  EL +LE+ +E   +S+R  +  K + + +  + + ++ N +       +++R+ Q +  EN
Sbjct:    2 GRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFA--SSSMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIE---ISLRGIRMRKEQLLTQEIQELSQKRNLIH--QENLDLSRKVQRIHQEN 177          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.037e-22
Identity = 59/165 (35.76%), Postives = 102/165 (61.82%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----------QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEE 480
            GRGKIEIKRI+NA++RQVT+SKRR+G+ KKA+E+++LCDA+V L++++S+ +++D+   S+S+  I+E+Y+             S  +LW  +  +L  ++  ++  +       R L G+ +S L+ ++L  LE  LE  L +IR         +RK+  MM++
Sbjct:    2 GRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFA--SSSMKSIIERYNETKEDPHQTMNASSEAKLWQQEAASLRQQLHNLQEYH-------RQLLGQQLSGLDVEDLQNLESKLEMSLKNIR---------LRKDNVMMDQ 148          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.037e-22
Identity = 62/164 (37.80%), Postives = 103/164 (62.80%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQ----SGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKN-GKMMEEEHNYLK 498
            RGK E+KRIENA++RQVT+SKRRNG+LKKA E++VLCDA+V+L+I++   K++++   S+S+   +E+Y R+          +   +   +E   + ++ ++++I  R L GE I + + +EL  LE+ L+  L  IR K   K + +R+   K+  EE N +K
Sbjct:    3 RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF--SSSSIAATIERYQRRIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAK---KYQLLREEIEKLKAEERNLVK 161          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 65/202 (32.18%), Postives = 116/202 (57.43%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYH--RQSGRRLWDPKHE--NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYAYH 612
            GRGKI I++I+++++RQVT+SKRR G++KKAKE+ +LCDA+V LII++++ K++D+   S+S+   +E+++  +   + L +P  E      E E +++E   +Q   R L G +++ L+ KEL  +E  LE  L  IR K+    + +    K +  + N +       E++R+ Q +  EN    +  Y   N +   +H
Sbjct:    2 GRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFA--SSSVKSTIERFNTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKRE---QILTNEIKELTRKRNLVHH--ENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHH 196          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.492e-21
Identity = 61/166 (36.75%), Postives = 106/166 (63.86%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKL-------RHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLK 498
            RG+ E+KRIEN ++RQVT+SKRRNG+LKKA E++VLCDA+V+LI+++  G+++++ S + SL   +++Y   +   +    ++ +  +I+++K +   +  KL       R + GE++   + +EL  LE  LE  L +IR K++E +E  R+  K+ E+E   LK
Sbjct:    3 RGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS-APSLQKTIDRYKAYTKDHV---NNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLE--RQIAKLKEKERTLLK 162          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 57/177 (32.20%), Postives = 109/177 (61.58%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEI 522
            GRGK+ ++RIEN  +RQVT++KRRNG+LKKA E+++LCDA+V+L++++ +G+++ + S S++++  LE+Y R     Q        + +N   E   +K   + +Q   R+L GED++ L   EL  LE  +   L  IR +++    +++  +++  +M+++ +  LK  L + ++
Sbjct:    2 GRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQF-SSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDV 177          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20
Identity = 60/166 (36.14%), Postives = 105/166 (63.25%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKL-------RHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLK 498
            RG+ E+KRIEN ++RQVT+SKRRNG+LKKA E++VLCDA+V+LI+++  G+++++ S + SL   +++Y   +   +    ++ +  +I+++K +   +  KL       R + GE++   + +EL  LE  LE  L  IR K++E +E  ++  K+ E+E   LK
Sbjct:    3 RGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS-APSLQKTIDRYKAYTKDHV---NNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLE--QQIAKLKEKERTLLK 162          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 50/143 (34.97%), Postives = 88/143 (61.54%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPST-SLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM 444
            GRG+ EIKRIEN + RQ T+ KRR+G+ KKA+E+ VLCDA + L+++++SGK++ + SP+  S+ + +E+Y   +  ++W    +    E+E++    D ++ +LR +  +D        L ALE  LE  +  +R ++  K+
Sbjct:    2 GRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKI 144          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20
Identity = 64/180 (35.56%), Postives = 111/180 (61.67%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIK--RENDRM---QIKLRHLNGEDISSLNPKELIALEDALENGLVSI---RDKQ-SEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQ 534
            R + EIKRIE+A+ RQVT+SKRR G+ KKA+E++VLCDA V+LI+++S+GK+  +   S+S+ +I+++Y+  S   L   +  +L   +E  K    N+++    ++LR + GE++  L+  EL  LE  LE GL  +   +D+Q  E++  +++    + EE+  L+  + Q   A +Q
Sbjct:    3 RERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFA--SSSMNEIIDKYNTHS-NNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPAEKQ 179          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19
Identity = 54/155 (34.84%), Postives = 96/155 (61.94%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR----QSGRRLWDPKHE---NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKN 462
            GRGK++++RIEN  +RQVT+SKRR G+LKKA EI VLCD  V+ I++++ G +  Y S  T++  ILE+Y R      G  + +   E   ++S +  +++   + ++   R+L G+++ SL  +++  LE+ ++  L +IR ++ + +  M KN
Sbjct:    2 GRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLL--MEKN 154          
The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
AGL21_ARATH5.388e-2232.79Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MAD23_ORYSJ7.037e-2235.76MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AGL19_ARATH7.037e-2237.80Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
AGL17_ARATH1.568e-2132.18Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
MAD56_ORYSI3.492e-2136.75MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD34_ORYSJ5.957e-2132.20MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MAD56_ORYSJ1.016e-2036.14MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD32_ORYSJ3.861e-2034.97MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MAD22_ORYSJ3.861e-2035.56MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD20_ORYSJ1.467e-1934.84MADS-box transcription factor 20 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC02022B01SK IF1 Citrus clementina cDNA clone C02022B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bp
CGAATTCGGCACGAGGGGGGAAGAGGCAAGATTGAGATCAAGAGAATAGA
GAACGCAAGCAACAGGCAGGTGACTTATTCAAAGAGAAGAAATGGAATCC
TCAAGAAGGCAAAGGAGATCACTGTGCTGTGTGATGCTAAAGTTTCTCTC
ATCATTTACGCTAGCTCTGGCAAGATGCACGATTACTGTAGCCCTTCTAC
TTCGTTGGTTGATATTTTGGAGCAATATCACCGGCAGTCAGGGAGGAGAT
TGTGGGATCCCAAGCATGAGAACCTCAGCAATGAAATTGAAAGAATCAAG
AGAGAGAATGATAGAATGCAGATCAAGCTCAGGCACCTAAATGGGGAGGA
TATCTCATCTCTGAACCCTAAAGAACTCATAGCCTTAGAGGATGCCCTCG
AAAATGGTCTTGTCAGCATCCGCGACAAACAGAGTGAAAAGATGGAAACG
ATGAGGAAAAATGGAAAAATGATGGAGGAGGAGCATAATTACCTCAAATT
TGTTCTGAGGCAACAGGAGATTGCGAGACAGCAACAGGAGCTTGCTATGG
AGAATAGTGTGAGTGCTGAGATTGATTATCAAAGAGAGAATCATCATGAC
TATGCCTACCATGTGCAGCCTATTCAGCCTAATCTTCAAGAAAGGATCTA
ATAGCACTTTCGGATTCCTTTCTTGAAAGCACTTTAAACATTTTAGGTTC
TGTGATGGAATTAGTGACCTCGATATATATTAATGAAATTACCTCGTTAT
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