CX290243
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22 Identity = 60/183 (32.79%), Postives = 116/183 (63.39%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQ--SGRRLWDPKHE--NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMEN 555 GRGKI I+RI+++++RQVT+SKRR G++KKAKE+ +LCDA+V LII++S+GK++D+ S+S+ ++++Y++ ++L +P E E +++E +Q R + GE ++ L+ EL +LE+ +E +S+R + K + + + + + ++ N + +++R+ Q + EN Sbjct: 2 GRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFA--SSSMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIE---ISLRGIRMRKEQLLTQEIQELSQKRNLIH--QENLDLSRKVQRIHQEN 177
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.037e-22 Identity = 59/165 (35.76%), Postives = 102/165 (61.82%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----------QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEE 480 GRGKIEIKRI+NA++RQVT+SKRR+G+ KKA+E+++LCDA+V L++++S+ +++D+ S+S+ I+E+Y+ S +LW + +L ++ ++ + R L G+ +S L+ ++L LE LE L +IR +RK+ MM++ Sbjct: 2 GRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFA--SSSMKSIIERYNETKEDPHQTMNASSEAKLWQQEAASLRQQLHNLQEYH-------RQLLGQQLSGLDVEDLQNLESKLEMSLKNIR---------LRKDNVMMDQ 148
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.037e-22 Identity = 62/164 (37.80%), Postives = 103/164 (62.80%), Query Frame = 1 Query: 22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQ----SGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKN-GKMMEEEHNYLK 498 RGK E+KRIENA++RQVT+SKRRNG+LKKA E++VLCDA+V+L+I++ K++++ S+S+ +E+Y R+ + + +E + ++ ++++I R L GE I + + +EL LE+ L+ L IR K K + +R+ K+ EE N +K Sbjct: 3 RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF--SSSSIAATIERYQRRIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAK---KYQLLREEIEKLKAEERNLVK 161
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21 Identity = 65/202 (32.18%), Postives = 116/202 (57.43%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYH--RQSGRRLWDPKHE--NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYAYH 612 GRGKI I++I+++++RQVT+SKRR G++KKAKE+ +LCDA+V LII++++ K++D+ S+S+ +E+++ + + L +P E E E +++E +Q R L G +++ L+ KEL +E LE L IR K+ + + K + + N + E++R+ Q + EN + Y N + +H Sbjct: 2 GRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFA--SSSVKSTIERFNTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKRE---QILTNEIKELTRKRNLVHH--ENLELSRKVQRIHQENVELYKKAYGTSNTNGLGHH 196
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.492e-21 Identity = 61/166 (36.75%), Postives = 106/166 (63.86%), Query Frame = 1 Query: 22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKL-------RHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLK 498 RG+ E+KRIEN ++RQVT+SKRRNG+LKKA E++VLCDA+V+LI+++ G+++++ S + SL +++Y + + ++ + +I+++K + + KL R + GE++ + +EL LE LE L +IR K++E +E R+ K+ E+E LK Sbjct: 3 RGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS-APSLQKTIDRYKAYTKDHV---NNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLE--RQIAKLKEKERTLLK 162
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21 Identity = 57/177 (32.20%), Postives = 109/177 (61.58%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR-----QSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEI 522 GRGK+ ++RIEN +RQVT++KRRNG+LKKA E+++LCDA+V+L++++ +G+++ + S S++++ LE+Y R Q + +N E +K + +Q R+L GED++ L EL LE + L IR +++ +++ +++ +M+++ + LK L + ++ Sbjct: 2 GRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQF-SSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDV 177
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.016e-20 Identity = 60/166 (36.14%), Postives = 105/166 (63.25%), Query Frame = 1 Query: 22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKL-------RHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLK 498 RG+ E+KRIEN ++RQVT+SKRRNG+LKKA E++VLCDA+V+LI+++ G+++++ S + SL +++Y + + ++ + +I+++K + + KL R + GE++ + +EL LE LE L IR K++E +E ++ K+ E+E LK Sbjct: 3 RGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS-APSLQKTIDRYKAYTKDHV---NNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLE--QQIAKLKEKERTLLK 162
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20 Identity = 50/143 (34.97%), Postives = 88/143 (61.54%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPST-SLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKM 444 GRG+ EIKRIEN + RQ T+ KRR+G+ KKA+E+ VLCDA + L+++++SGK++ + SP+ S+ + +E+Y + ++W + E+E++ D ++ +LR + +D L ALE LE + +R ++ K+ Sbjct: 2 GRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKI 144
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.861e-20 Identity = 64/180 (35.56%), Postives = 111/180 (61.67%), Query Frame = 1 Query: 22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIK--RENDRM---QIKLRHLNGEDISSLNPKELIALEDALENGLVSI---RDKQ-SEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQ 534 R + EIKRIE+A+ RQVT+SKRR G+ KKA+E++VLCDA V+LI+++S+GK+ + S+S+ +I+++Y+ S L + +L +E K N+++ ++LR + GE++ L+ EL LE LE GL + +D+Q E++ +++ + EE+ L+ + Q A +Q Sbjct: 3 RERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFA--SSSMNEIIDKYNTHS-NNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPAEKQ 179
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.467e-19 Identity = 54/155 (34.84%), Postives = 96/155 (61.94%), Query Frame = 1 Query: 19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR----QSGRRLWDPKHE---NLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKN 462 GRGK++++RIEN +RQVT+SKRR G+LKKA EI VLCD V+ I++++ G + Y S T++ ILE+Y R G + + E ++S + +++ + ++ R+L G+++ SL +++ LE+ ++ L +IR ++ + + M KN Sbjct: 2 GRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLL--MEKN 154 The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bpback to top |