CX290249
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_VIBCH (Diaminopimelate decarboxylase OS=Vibrio cholerae GN=lysA PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30 Identity = 82/223 (36.77%), Postives = 126/223 (56.50%), Query Frame = 3 Query: 18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680 G G +VS EL L AG DP+K +F+G GK ++ A Q + NV+SE +L+ + + G K + LRINPDVD + HPY++TG +++KFGI ++ + PN L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGGLG+ Y + P+P + + L R+L LI EPGR++ AN LV V +K Sbjct: 76 GSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLK 295
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_HAEIN (Diaminopimelate decarboxylase OS=Haemophilus influenzae GN=lysA PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29 Identity = 76/225 (33.78%), Postives = 127/225 (56.44%), Query Frame = 3 Query: 18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLS-RNLNLIIEPGRSLIANTCCLVNHVTGVKTN 686 G G +VS EL L AG D +K +F+G K E+++ A + + NV+S +L++I + GK + LR+NPDVD HPY++TG K +KFG+ + + PN +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T P P + + + E + + L +I+EPGR++ AN LV V +K+N Sbjct: 75 GSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVRIRCFNVESVSELKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREVYKLASTLPN-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TDETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSN 296
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_PSEFL (Diaminopimelate decarboxylase OS=Pseudomonas fluorescens GN=lysA PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28 Identity = 77/223 (34.53%), Postives = 122/223 (54.71%), Query Frame = 3 Query: 18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDL-ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680 G G +VSG EL L AG K +F+G GK ED+ A + GV N++S +L + + + G + + LR+NPDVD HPY++TG K +KFGI + PN L+++G CH+GS +T ++ F DA ++ +D++ G + ++++GGG+G+ Y P + I VRE + R+L L+ EPGR ++AN L+ V +K Sbjct: 75 GAGFDIVSGGELERVLAAGGSADKIVFSGVGKTREDMRRALEVGVHCFNIESTDELGSRLQIVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAAQLPN-LEVLGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIYLRHIDLGGGVGVRYRDEEP--PLVADYIKAVRERLDGRDLALMFEPGRYIVANAGVLLTQVEYLK 294
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_HELPJ (Diaminopimelate decarboxylase OS=Helicobacter pylori J99 GN=lysA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.795e-26 Identity = 71/219 (32.42%), Postives = 123/219 (56.16%), Query Frame = 3 Query: 18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 668 G GA VS E++ AL+AG P K +F+G GK ++ A + + F+NV+S +L+ I ++ G K + +RINP++D + HPY++TG K +KFG+ E L+ FL A K+ L+ V H H+GS + +D +A+ + + A G ++ + ++GGG+G+ Y + + K + + + +L +I EPGRS++A + L+ V Sbjct: 61 GSGADCVSIGEIQRALKAGIKPYKIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVEEKEALEMFLWAKKS--AFLEPVSVHFHIGSQLLDLDPITEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETI--KLYDYAQGILNSLQGLDLTIICEPGRSIVAESGELITQV 275
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_HELPY (Diaminopimelate decarboxylase OS=Helicobacter pylori GN=lysA PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24 Identity = 68/217 (31.34%), Postives = 121/217 (55.76%), Query Frame = 3 Query: 24 GAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 668 GA VS E+ AL+AG P + +F+G GK ++ A + + F+NV+S +L I ++ G K + +RINP++D + HPY++TG K +KFG+ E L+ FL A K+ L+ V H H+GS ++ ++ +A+ + + A G ++ + ++GGG+G+ Y + + K + + + +L +I EPGRS++A + L+ V Sbjct: 63 GADCVSIGEIYRALKAGIKPYRIVFSGVGKSGFEIEQALKLNILFLNVESFMELTTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKS--AFLEPVSVHFHIGSQLSDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETI--KLYDYAQGILNSLQGLDLTIICEPGRSIVAESGELITQV 275
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_CAMJE (Diaminopimelate decarboxylase OS=Campylobacter jejuni GN=lysA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.606e-21 Identity = 63/218 (28.90%), Postives = 116/218 (53.21%), Query Frame = 3 Query: 36 VSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 686 VS E++ AL+AG K IF+G GK E+L A + + ++N++SE ++ + ++ K + +R+NP+VD + HPY++TG +KFG+ + + K + + L+ VG H H+GS + + +AA ++ + +++A ++ + +IGGGLG+ Y P + + + +L + +EPGR L+A + V V K N Sbjct: 66 VSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEYDILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEIDIARKMYLYAK-NSSFLEPVGVHFHIGSQLLDISPIHEAAAIVAKLVRELKALQIDLKFFDIGGGLGV-AYEKNECEPDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVLYEKQN 281
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_BACSU (Diaminopimelate decarboxylase OS=Bacillus subtilis GN=lysA PE=2 SV=5) HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20 Identity = 71/224 (31.70%), Postives = 114/224 (50.89%), Query Frame = 3 Query: 3 IRHEGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR-AQGFEVDYLNIGGGLGIDYYHTGAVLPKP---RNLIDTVRELVLSRNLN---LIIEPGRSLIAN 644 + E G +VSG EL A+ AGF + F+GN K E+L +A + + + VD+ +++ + + G ++VLLRI P V+ H Y+ TG ++SKFG + N + + ++ V ++L+G HCH+GS I F AA + +D+ R + F LN+GGG GI Y L +I+ V+E + + IEPGRSL+ + Sbjct: 76 LAEEEGLSLDVVSGGELYTAVAAGFPAERIHFHGNNKSREELRMALEHRIGCIVVDNFYEIALLEDLCKETGHSIDVLLRITPGVEAHTHDYITTGQEDSKFGFDLHNGQTERAIEQV-LQSEHIQLLGVHCHIGSQIFDTAGFVLAAEKIFKKLDEWRDSYSFVSKVLNLGGGFGIRYTEDDEPLHATEYVEKIIEAVKENASRYGFDIPEIWIEPGRSLVGD 298
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_SYNY3 (Diaminopimelate decarboxylase OS=Synechocystis sp. (strain PCC 6803) GN=lysA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20 Identity = 73/244 (29.92%), Postives = 117/244 (47.95%), Query Frame = 3 Query: 3 IRHEGGCGAVLVSGNELRLALRA----GFDPT----KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLS-------RNL---NLIIEPGRSLIANTCCLVNHVTGVK 680 I + G G +VSG EL + A G+D K F+GN K +++L A + VD+ +LE + + +G V ++LR+ P ++ H Y+ TG+ +SKFG +L+ + P+ L +G H H+GS I + +D ++V + K G + LNIGGGLGI Y + P ++ + + +S +N+ LI EPGRSL+ + C V G K Sbjct: 103 IAAQEGLGFDVVSGGELFTTVSALKQLGWDEAEIAEKIYFHGNNKSVQELQEAIAINCTIIVDNWLELETLTKLAADSGAPVKIMLRLTPGIECHTHEYIKTGHLDSKFGFDPNQLEAVFTYIAQQPS-LHCLGLHAHIGSQIFERQPHKDLGEVLVQWFTKGLTYGLPLTELNIGGGLGICYTES----DDPPSIEEWAQVAAISVAKACDRQNIPYPKLIAEPGRSLVGSACVTAYRVGGRK 341
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_THEMA (Diaminopimelate decarboxylase OS=Thermotoga maritima GN=lysA PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20 Identity = 79/230 (34.35%), Postives = 121/230 (52.61%), Query Frame = 3 Query: 3 IRHEGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV---LSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680 I E G G +V+ EL A AG ++NGNGK + + +E V VNVDS E + + + + V +R+NP+VD + HP+++TG K KFGI E L F++ ++ + + G H H+GS IT+V+ F +A +V ++ GFE +NIGGG GI+Y +G L + + RE V L R +I+E GR ++A + L+ V VK Sbjct: 56 ILREEGFGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDS---FEEMEIWRELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRS----MNIRGLHVHIGSQITRVEPFVEAFSKVVRASER---YGFE--EINIGGGWGINY--SGEELD-----LSSYREKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVK 266
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_BACMT (Diaminopimelate decarboxylase OS=Bacillus methanolicus GN=lysA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20 Identity = 70/224 (31.25%), Postives = 118/224 (52.68%), Query Frame = 3 Query: 3 IRHEGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-GFEVDYLNIGGGLGIDYYHTGAVLPKP---RNLIDTVRELVLSRNL---NLIIEPGRSLIAN 644 + E G +VSG EL AL AGF K F+GN K +L +A + + + VD+ +L+ I K N+LLR+ P ++ H Y+ TG ++SKFG ++N + + L + + N ++++G HCH+GS I F AA + + + + + +E LN+GGG GI Y +P + +I+ V++ V + ++ + IEPGRSL+ + Sbjct: 76 LAEEEGLSLDVVSGGELYTALVAGFPVHKIHFHGNNKSRAELEMALEHQIGCIVVDNFHELDLIDSICSEKNVKTNILLRVTPGIEAHTHDYILTGQEDSKFGFDLQNGQAEKALQ-IALNSNFVEVLGVHCHIGSQIFDTTGFVLAARKIFEKLKEWKDRLSYEPKVLNLGGGFGIRYTEEDDPIPASQYVKEIINEVKKQVSAYSMKMPEIWIEPGRSLVGD 298 The following BLAST results are available for this feature:
BLAST of CX290249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290249 ID=CX290249; Name=CX290249; organism=Citrus clementina; type=EST; length=687bpback to top |