CX290249

Overview
NameCX290249
Unique NameCX290249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_VIBCH (Diaminopimelate decarboxylase OS=Vibrio cholerae GN=lysA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30
Identity = 82/223 (36.77%), Postives = 126/223 (56.50%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680
            G G  +VS  EL   L AG DP+K +F+G GK   ++  A Q  +   NV+SE +L+ +   +   G K  + LRINPDVD + HPY++TG +++KFGI  ++         + PN L + G  CH+GS +T +  F DA   ++  ID ++A+G  + +L++GGGLG+ Y     + P+P      + + L   R+L LI EPGR++ AN   LV  V  +K
Sbjct:   76 GSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLK 295          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_HAEIN (Diaminopimelate decarboxylase OS=Haemophilus influenzae GN=lysA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 76/225 (33.78%), Postives = 127/225 (56.44%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLS-RNLNLIIEPGRSLIANTCCLVNHVTGVKTN 686
            G G  +VS  EL   L AG D +K +F+G  K  E+++ A +  +   NV+S  +L++I   +   GK   + LR+NPDVD   HPY++TG K +KFG+   + +         PN +K+ G  CH+GS +T++  F DA   ++  +++++  G  + +L++GGGLG+ Y  T    P P +  + + E + +   L +I+EPGR++ AN   LV  V  +K+N
Sbjct:   75 GSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVRIRCFNVESVSELKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREVYKLASTLPN-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TDETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSN 296          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_PSEFL (Diaminopimelate decarboxylase OS=Pseudomonas fluorescens GN=lysA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28
Identity = 77/223 (34.53%), Postives = 122/223 (54.71%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDL-ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680
            G G  +VSG EL   L AG    K +F+G GK  ED+  A + GV   N++S  +L   + + +   G +  + LR+NPDVD   HPY++TG K +KFGI     +         PN L+++G  CH+GS +T ++ F DA   ++  +D++   G  + ++++GGG+G+ Y       P   + I  VRE +  R+L L+ EPGR ++AN   L+  V  +K
Sbjct:   75 GAGFDIVSGGELERVLAAGGSADKIVFSGVGKTREDMRRALEVGVHCFNIESTDELGSRLQIVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAAQLPN-LEVLGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIYLRHIDLGGGVGVRYRDEEP--PLVADYIKAVRERLDGRDLALMFEPGRYIVANAGVLLTQVEYLK 294          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_HELPJ (Diaminopimelate decarboxylase OS=Helicobacter pylori J99 GN=lysA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.795e-26
Identity = 71/219 (32.42%), Postives = 123/219 (56.16%), Query Frame = 3
Query:   18 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 668
            G GA  VS  E++ AL+AG  P K +F+G GK   ++  A +  + F+NV+S  +L+ I   ++  G K  + +RINP++D + HPY++TG K +KFG+   E L+ FL A K+    L+ V  H H+GS +  +D   +A+  +      + A G ++ + ++GGG+G+ Y +   +  K  +    +   +   +L +I EPGRS++A +  L+  V
Sbjct:   61 GSGADCVSIGEIQRALKAGIKPYKIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVEEKEALEMFLWAKKS--AFLEPVSVHFHIGSQLLDLDPITEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETI--KLYDYAQGILNSLQGLDLTIICEPGRSIVAESGELITQV 275          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_HELPY (Diaminopimelate decarboxylase OS=Helicobacter pylori GN=lysA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 68/217 (31.34%), Postives = 121/217 (55.76%), Query Frame = 3
Query:   24 GAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 668
            GA  VS  E+  AL+AG  P + +F+G GK   ++  A +  + F+NV+S  +L  I   ++  G K  + +RINP++D + HPY++TG K +KFG+   E L+ FL A K+    L+ V  H H+GS ++ ++   +A+  +      + A G ++ + ++GGG+G+ Y +   +  K  +    +   +   +L +I EPGRS++A +  L+  V
Sbjct:   63 GADCVSIGEIYRALKAGIKPYRIVFSGVGKSGFEIEQALKLNILFLNVESFMELTTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKS--AFLEPVSVHFHIGSQLSDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETI--KLYDYAQGILNSLQGLDLTIICEPGRSIVAESGELITQV 275          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_CAMJE (Diaminopimelate decarboxylase OS=Campylobacter jejuni GN=lysA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.606e-21
Identity = 63/218 (28.90%), Postives = 116/218 (53.21%), Query Frame = 3
Query:   36 VSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 686
            VS  E++ AL+AG    K IF+G GK  E+L  A +  + ++N++SE ++  +   ++    K  + +R+NP+VD + HPY++TG   +KFG+  +  +      K + + L+ VG H H+GS +  +    +AA ++   + +++A   ++ + +IGGGLG+  Y      P   +    +   +   +L + +EPGR L+A +   V  V   K N
Sbjct:   66 VSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEYDILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEIDIARKMYLYAK-NSSFLEPVGVHFHIGSQLLDISPIHEAAAIVAKLVRELKALQIDLKFFDIGGGLGV-AYEKNECEPDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVLYEKQN 281          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_BACSU (Diaminopimelate decarboxylase OS=Bacillus subtilis GN=lysA PE=2 SV=5)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 71/224 (31.70%), Postives = 114/224 (50.89%), Query Frame = 3
Query:    3 IRHEGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR-AQGFEVDYLNIGGGLGIDYYHTGAVLPKP---RNLIDTVRELVLSRNLN---LIIEPGRSLIAN 644
            +  E G    +VSG EL  A+ AGF   +  F+GN K  E+L +A +  +  + VD+ +++  +    +  G  ++VLLRI P V+   H Y+ TG ++SKFG  + N + +  ++ V      ++L+G HCH+GS I     F  AA  +   +D+ R +  F    LN+GGG GI Y      L        +I+ V+E       +   + IEPGRSL+ +
Sbjct:   76 LAEEEGLSLDVVSGGELYTAVAAGFPAERIHFHGNNKSREELRMALEHRIGCIVVDNFYEIALLEDLCKETGHSIDVLLRITPGVEAHTHDYITTGQEDSKFGFDLHNGQTERAIEQV-LQSEHIQLLGVHCHIGSQIFDTAGFVLAAEKIFKKLDEWRDSYSFVSKVLNLGGGFGIRYTEDDEPLHATEYVEKIIEAVKENASRYGFDIPEIWIEPGRSLVGD 298          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_SYNY3 (Diaminopimelate decarboxylase OS=Synechocystis sp. (strain PCC 6803) GN=lysA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 73/244 (29.92%), Postives = 117/244 (47.95%), Query Frame = 3
Query:    3 IRHEGGCGAVLVSGNELRLALRA----GFDPT----KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLS-------RNL---NLIIEPGRSLIANTCCLVNHVTGVK 680
            I  + G G  +VSG EL   + A    G+D      K  F+GN K +++L  A      + VD+  +LE +   +  +G  V ++LR+ P ++   H Y+ TG+ +SKFG    +L+     +   P+ L  +G H H+GS I +    +D   ++V +  K    G  +  LNIGGGLGI Y  +      P ++ +  +   +S       +N+    LI EPGRSL+ + C     V G K
Sbjct:  103 IAAQEGLGFDVVSGGELFTTVSALKQLGWDEAEIAEKIYFHGNNKSVQELQEAIAINCTIIVDNWLELETLTKLAADSGAPVKIMLRLTPGIECHTHEYIKTGHLDSKFGFDPNQLEAVFTYIAQQPS-LHCLGLHAHIGSQIFERQPHKDLGEVLVQWFTKGLTYGLPLTELNIGGGLGICYTES----DDPPSIEEWAQVAAISVAKACDRQNIPYPKLIAEPGRSLVGSACVTAYRVGGRK 341          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_THEMA (Diaminopimelate decarboxylase OS=Thermotoga maritima GN=lysA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 79/230 (34.35%), Postives = 121/230 (52.61%), Query Frame = 3
Query:    3 IRHEGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV---LSRNLNLIIEPGRSLIANTCCLVNHVTGVK 680
            I  E G G  +V+  EL  A  AG      ++NGNGK  + +    +E V  VNVDS    E + +   +  + V   +R+NP+VD + HP+++TG K  KFGI  E L  F++  ++    + + G H H+GS IT+V+ F +A   +V   ++    GFE   +NIGGG GI+Y  +G  L      + + RE V   L R   +I+E GR ++A +  L+  V  VK
Sbjct:   56 ILREEGFGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDS---FEEMEIWRELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRS----MNIRGLHVHIGSQITRVEPFVEAFSKVVRASER---YGFE--EINIGGGWGINY--SGEELD-----LSSYREKVVPDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVK 266          
BLAST of CX290249 vs. ExPASy Swiss-Prot
Match: DCDA_BACMT (Diaminopimelate decarboxylase OS=Bacillus methanolicus GN=lysA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 70/224 (31.25%), Postives = 118/224 (52.68%), Query Frame = 3
Query:    3 IRHEGGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-GFEVDYLNIGGGLGIDYYHTGAVLPKP---RNLIDTVRELVLSRNL---NLIIEPGRSLIAN 644
            +  E G    +VSG EL  AL AGF   K  F+GN K   +L +A +  +  + VD+  +L+ I         K N+LLR+ P ++   H Y+ TG ++SKFG  ++N + +  L  +  + N ++++G HCH+GS I     F  AA  +   + + + +  +E   LN+GGG GI Y      +P     + +I+ V++ V + ++    + IEPGRSL+ +
Sbjct:   76 LAEEEGLSLDVVSGGELYTALVAGFPVHKIHFHGNNKSRAELEMALEHQIGCIVVDNFHELDLIDSICSEKNVKTNILLRVTPGIEAHTHDYILTGQEDSKFGFDLQNGQAEKALQ-IALNSNFVEVLGVHCHIGSQIFDTTGFVLAARKIFEKLKEWKDRLSYEPKVLNLGGGFGIRYTEEDDPIPASQYVKEIINEVKKQVSAYSMKMPEIWIEPGRSLVGD 298          
The following BLAST results are available for this feature:
BLAST of CX290249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
DCDA_VIBCH2.676e-3036.77Diaminopimelate decarboxylase OS=Vibrio cholerae G... [more]
DCDA_HAEIN2.959e-2933.78Diaminopimelate decarboxylase OS=Haemophilus influ... [more]
DCDA_PSEFL5.580e-2834.53Diaminopimelate decarboxylase OS=Pseudomonas fluor... [more]
DCDA_HELPJ1.795e-2632.42Diaminopimelate decarboxylase OS=Helicobacter pylo... [more]
DCDA_HELPY3.743e-2431.34Diaminopimelate decarboxylase OS=Helicobacter pylo... [more]
DCDA_CAMJE6.606e-2128.90Diaminopimelate decarboxylase OS=Campylobacter jej... [more]
DCDA_BACSU1.127e-2031.70Diaminopimelate decarboxylase OS=Bacillus subtilis... [more]
DCDA_SYNY31.472e-2029.92Diaminopimelate decarboxylase OS=Synechocystis sp.... [more]
DCDA_THEMA1.922e-2034.35Diaminopimelate decarboxylase OS=Thermotoga mariti... [more]
DCDA_BACMT3.279e-2031.25Diaminopimelate decarboxylase OS=Bacillus methanol... [more]

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Properties
Property NameValue
Genbank descriptionC02022B07SK IF1 Citrus clementina cDNA clone C02022B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290249 ID=CX290249; Name=CX290249; organism=Citrus clementina; type=EST; length=687bp
GAATTCGGCACGAGGGGGGTTGTGGAGCTGTTCTTGTTAGTGGCAATGAG
CTGAGGCTTGCTCTTCGAGCTGGATTTGATCCCACCAAGTGTATCTTTAA
TGGGAATGGGAAGCTTTTGGAGGATTTGGTGCTGGCTGCACAAGAGGGTG
TGTTTGTTAATGTTGATAGTGAGTTTGACTTGGAGAATATTGTTGTAGCT
TCAAGAATTGCTGGCAAGAAGGTTAATGTGTTGCTTCGGATTAATCCTGA
TGTGGATCCTCAGGTCCATCCTTATGTTGCTACTGGGAACAAGAACTCTA
AATTTGGCATTAGGAATGAGAAGTTGCAATGGTTTTTGGATGCCGTGAAG
GCACATCCTAATGAGTTGAAGCTTGTGGGGGCTCATTGCCATCTTGGTTC
CACCATTACCAAGGTGGACATATTCAGGGATGCTGCAGTTCTTATGGTCA
ATTACATTGACAAAATCCGCGCCCAAGGCTTTGAAGTTGATTACTTGAAC
ATTGGAGGTGGTTTAGGAATAGACTATTATCACACTGGTGCTGTCCTTCC
CAAACCCAGAAATCTGATTGACACCGTTAGGGAGCTGGTTCTGTCGAGAA
ATCTGAATCTCATCATTGAACCAGGGAGATCACTCATTGCAAATACCTGC
TGCTTGGTTAATCACGTCACTGGGGTTAAAACTAATG
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