CX290251

Overview
NameCX290251
Unique NameCX290251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP3_HUMAN (Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16
Identity = 73/225 (32.44%), Postives = 104/225 (46.22%), Query Frame = 1
Query:   19 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE------------AVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVK---IQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK---YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            E  T+   NK  +    + + +    IFGG L++ V        S    PFL L LDI S+             V ++ D LR F+  E L+   T           +KS K   IQ L K+L LHL RF + +    K+   V FPL+ +  +  L+ P   G +   Y+L A V HHG     GHYTA A +   +W HF+D++VT      V+  +AY+LFY
Sbjct:  291 ENSTLSASNKCCINGASTVVTA----IFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVCSLRDCLRSFTDLEELD--ETELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTAYLRNKVDTYVEFPLRGLDMKCYLLEPENSGPESCLYDLAAVVVHHGSGVGSGHYTAYATH-EGRWFHFNDSTVTLTDEETVVKAKAYILFY 508          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP17_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo sapiens GN=USP17A PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.580e-16
Identity = 64/187 (34.22%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            +  IFGG  +S +K    +  S T  P+L + LDI  +A  +++ AL     PE L G      G       A K++ + T +K+LIL L RFS       K+ K+V++P  L + +  +  P+     Y L A + H G     GHY +  +    QW   DDA VTA   + VL  QAYVLFY Q
Sbjct:  193 IHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFS--DVTGNKIAKNVQYPECLDM-QPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQ 374          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP33_DANRE (Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.813e-16
Identity = 58/150 (38.67%), Postives = 79/150 (52.67%), Query Frame = 1
Query:  202 VHTIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            V T++D L  F A + L+G    S      +    K  K+Q+L +IL +HL RF +    STK+   V FPL+ L +   L    SA    Y+L++ + HHG   S GHY A  R   N  W  FDD SVT +  S V + +AYVLFYK+
Sbjct:  521 VVTLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVKFCKVQSLPEILCIHLKRFRHELMFSTKIGTHVSFPLEGLEMQPFLAKDSSALTTTYDLLSVICHHG-TASSGHYIAYCRNELNQLWYEFDDQSVTEVSESCVQNAEAYVLFYKK 669          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP2_CHICK (Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 71/207 (34.30%), Postives = 101/207 (48.79%), Query Frame = 1
Query:   40 KNKSAVTRTQSFLPSALSDIFGGQLKSVVK-AQGNKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            K++    R Q    S +SD+F GQLKS +  ++    S    PF  L L I    Y E   T+ D LRLF+  + L+G    +       T   K   IQ   KIL+LHL RFS     ++KL   V FPL+ +  R+   + S     Y L A V++H      GHYTA  +   + +W  F+D+ VT + +S V    AY+LFY+
Sbjct:  147 KSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYCSTAFDPFWDLSLPIPKKGYGEV--TLMDCLRLFTKEDVLDGDEKPTCCRCKARTRCTKKFSIQKFPKILVLHLKRFSEARIRASKLTTFVNFPLKDLDLRE-FASQSCNHAVYNLYA-VSNHSGTTMGGHYTAYCKSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLFYE 349          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP42_HUMAN (Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.969e-15
Identity = 63/182 (34.62%), Postives = 88/182 (48.35%), Query Frame = 1
Query:   97 IFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAG-VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            IFGG L+S VK    K  S T  P+L + L+I  +A  ++  AL  F  PE L+G  +        +V A K   I   S +L L L RF+  + G  K+ K V++P  L + R  +  P+ E   Y L A + H G +   GHY    +  N  W   +D+ V+      VL  QAYVLFY
Sbjct:  233 IFGGYLRSRVKCLNCKGVSDTFDPYLDITLEI--KAAQSVNKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGG--KIAKDVKYPEYLDI-RPYMSQPNGEPIVYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFY 409          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: U17L6_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 6 OS=Homo sapiens GN=USP17L6 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.877e-15
Identity = 63/187 (33.69%), Postives = 90/187 (48.13%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            +  IFGG  +S +K    +  S T  P+L + LDI  +A  +++ AL     PE L G      G       A K++ + T +K+LIL L RFS       K+ K+V++P  L + +  +   +     Y L A + H G     GHY +  +    QW   DDA VTA   + VL  QAYVLFY Q
Sbjct:  193 IHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFS--DVTGNKIAKNVQYPECLDM-QPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQ 374          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP33_HUMAN (Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 56/150 (37.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:  202 VHTIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            V T++D L  F A + L+G    S      +    K  K+Q   +IL +HL RF +    STK+   V FPL+ L L   L     A+   Y+L++ + HHG   S GHY A  R   N+ W  FDD SVT +  S V + +AYVLFY++
Sbjct:  566 VVTLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVKFCKVQNFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQIVTYDLLSVICHHG-TASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRK 714          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: U17L2_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 2 OS=Homo sapiens GN=USP17L2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 64/187 (34.22%), Postives = 90/187 (48.13%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            +  IFGG  +S +K    +  S T  P+L + LDI  +A  +++ AL     PE L G      G       A K++ + T +K+LIL L RFS       KL K+V++P  L + +  +   +     Y L A + H G     GHY +  +    QW   DDA VTA   + VL  QAYVLFY Q
Sbjct:  193 IHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASKTLTLHTSAKVLILVLKRFS--DVTGNKLAKNVQYPECLDM-QPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAKVTACSITSVLSQQAYVLFYIQ 374          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP3_MOUSE (Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15
Identity = 73/225 (32.44%), Postives = 102/225 (45.33%), Query Frame = 1
Query:   19 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE------------AVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVK---IQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK---YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            E  T+   NK  +    + + +    IFGG L++ V        S    PFL L LDI S+             V ++ D LR F+  E L+   T           +KS K   IQ L K L LHL RF + +    K+   V+FPL+ +  +  L+ P   G     Y+L A V HHG     GHYTA A +   +W HF+D++VT      V   +AY+LFY
Sbjct:  291 ENSTLSASNKCCINGASTVVTA----IFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVCSLRDCLRSFTDLEELD--ETELYMCHKCKKKQKSTKKFWIQKLPKALCLHLKRFHWTAYLRNKVDTYVQFPLRGLDMKCYLLEPENSGPDSCLYDLAAVVVHHGSGVGSGHYTAYAVH-EGRWFHFNDSTVTVTDEETVGKAKAYILFY 508          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP33_PONAB (Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15
Identity = 56/150 (37.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:  202 VHTIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            V T++D L  F A + L+G    S      +    K  K+Q   +IL +HL RF +    STK+   V FPL+ L L   L     A+   Y+L++ + HHG   S GHY A  R   N+ W  FDD SVT +  S V + +AYVLFY++
Sbjct:  534 VVTLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVKFCKVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQIVTYDLLSVICHHG-TASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRK 682          
The following BLAST results are available for this feature:
BLAST of CX290251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP3_HUMAN3.507e-1632.44Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sa... [more]
UBP17_HUMAN4.580e-1634.22Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo s... [more]
UBP33_DANRE7.813e-1638.67Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio ... [more]
UBP2_CHICK1.333e-1534.30Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus ... [more]
UBP42_HUMAN2.969e-1534.62Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo s... [more]
U17L6_HUMAN3.877e-1533.69Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
UBP33_HUMAN5.064e-1537.33Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo s... [more]
U17L2_HUMAN5.064e-1534.22Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
UBP3_MOUSE6.614e-1532.44Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus mus... [more]
UBP33_PONAB6.614e-1537.33Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo ... [more]

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Properties
Property NameValue
Genbank descriptionC02022B09SK IF1 Citrus clementina cDNA clone C02022B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290251 ID=CX290251; Name=CX290251; organism=Citrus clementina; type=EST; length=766bp
GAATTCGGCACGAGGGATGAATGGGAAACAGTTGGCCCAAAGAACAAATC
TGCAGTGACAAGAACACAGAGCTTCCTGCCTTCAGCACTTAGTGATATAT
TTGGAGGACAGCTGAAAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCT
GCAACTGTTCAGCCATTTCTCTTGCTCCACCTTGATATTTACTCTGAAGC
TGTGCATACAATTGAGGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATC
TTGAGGGATACCGTACATCATCTACTGGAAATGCTGGTGTTGTGACTGCC
AAAAAATCTGTCAAGATACAGACGCTTTCAAAGATTTTGATTTTACACCT
GATGCGTTTTAGTTATGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTG
TCCGTTTTCCTCTTCAATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCA
TCTGCTGAGGGTCGAAAATATGAACTTGTTGCCACAGTTACCCACCATGG
AAGAGATCCCTCGAAGGGGCATTATACTGCTGATGCTCGGTATTTTAATG
ACCAGTGGCTCCATTTTGACGATGCCTCTGTGACTGCTATTGGGACAAGT
AAGGTATTGCATGACCAGGCATACGTCCTTTTCTACAAACAAGTTTAGAA
GGTTGCAGGATTATAAGTTTCAATGGGAGAAAGAAGCCATATCTGATGGA
TTCAACCAATGACAGTAGCTGAACTGTTTTCTTAATTTGCAGTAGTTTTT
AAAATGTTGTAATGCA
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