CX290251

Overview
NameCX290251
Unique NameCX290251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP9_YEAST (Ubiquitin carboxyl-terminal hydrolase 9 OS=Saccharomyces cerevisiae GN=UBP9 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14
Identity = 61/214 (28.50%), Postives = 99/214 (46.26%), Query Frame = 1
Query:   37 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH------DQ--AYVLFYKQ 642
            P+ +    +T +   + ++D+F G L + +K    +  ++  +PFL   +++  +    I+  L+ +   E L G          G+  A++ V ++ L  IL LHL RF Y  +   + KL   + +PL L +        ++  +KYEL   V H G  P  GHY    R     WL +DD +V +I    VL       DQ  AYVLFYK+
Sbjct:  456 PRMRFGPQKTDNSNDNFITDLFKGTLTNRIKCLTCDNITSRDEPFLDFPIEVQGDEETDIQKMLKSYHQREMLNGVNKFYCNKCYGLQEAERMVGLKQLPHILSLHLKRFKYSEEQKSNIKLFNKILYPLTLDVSSTF---NTSVYKKYELSGVVIHMGSGPQHGHYVCICRNEKFGWLLYDDETVESIKEETVLQFTGHPGDQTTAYVLFYKE 666          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP8_YEAST (Ubiquitin carboxyl-terminal hydrolase 8 OS=Saccharomyces cerevisiae GN=UBP8 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14
Identity = 59/192 (30.73%), Postives = 90/192 (46.88%), Query Frame = 1
Query:   97 IFGGQLKSVVKAQG--NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQLVLGRDLLVTPSAEGRK---------YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            +F G L+S +   G  N +  T+ PFL L LDI  +    + + L  F   E L+ +            A K + I  L  +L+L L RF +   GS  KL   + FP  L + ++   T   +            YEL+  V+H G   ++GHY A  +    QW  F+D+ V++I   +VL +QAY+LFY
Sbjct:  278 VFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKK--KLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNM-KNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 465          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP36_DROVI (Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila virilis GN=Usp36 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14
Identity = 62/187 (33.16%), Postives = 87/187 (46.52%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR--KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            +S IFGG L+S V+    N  S T Q F  L LDI      T+E+A   + + E LE       G    V+A K   ++     L + L RFS       KL K + F  ++ L R    +P+A  +   Y LV+ VTH G     GHYTA        + +FDD+ V  I    V +  AY++FY+
Sbjct:  319 ISQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDI--RKADTLEEAFDGYFSRERLEDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFS---MMGNKLTKQISFKPRIDLSRFAARSPTAAAQPLSYRLVSMVTHLGVSQHCGHYTAIGLTEAGSYYNFDDSYVKPIAMQSVCNTNAYIMFYE 500          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP33_XENTR (Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis GN=usp33 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.599e-14
Identity = 53/148 (35.81%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  208 TIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            T++D L  F A + L+G    S      +    K  K+Q   +IL +HL RF +    STK+   V FPL+ L L   L     ++   Y+L++ + HHG   S GHY A  R   N+ W  FDD SVT +  + V + +AYVLFY++
Sbjct:  518 TLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVKFCKVQKFPEILCIHLKRFRHELMFSTKIGTHVSFPLEGLDLQPFLAKDSPSQIVTYDLLSVICHHG-TASSGHYIAYCRNNLNNLWYEFDDQSVTEVSEATVQNAEAYVLFYRK 664          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP15_MOUSE (Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.312e-14
Identity = 48/146 (32.88%), Postives = 77/146 (52.74%), Query Frame = 1
Query:  211 IEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFND-QWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            ++D + LF+  E L         N      A K + + +L  +L++HL RFSY      KL   V FP+  +   + L+ P+A   +Y L+A   H+G     GHYTA A+  +D +W +FDD+SV+     +++   AYVLFY++
Sbjct:  788 LKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCRYNLIAVSNHYG-GMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP15_HUMAN (Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 7.312e-14
Identity = 48/146 (32.88%), Postives = 77/146 (52.74%), Query Frame = 1
Query:  211 IEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFND-QWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            ++D + LF+  E L         N      A K + + +L  +L++HL RFSY      KL   V FP+  +   + L+ P+A   +Y L+A   H+G     GHYTA A+  +D +W +FDD+SV+     +++   AYVLFY++
Sbjct:  788 LKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYG-GMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP23_ARATH (Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.550e-14
Identity = 59/196 (30.10%), Postives = 89/196 (45.41%), Query Frame = 1
Query:   64 TQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG----YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            + ++  S +  IFGG L+S VK  Q +  S    PFL L LDI      +++ AL  F+A E L+     Y+         V AKK + +     +L +HL RF   +  S K+ + V F   + + +  +  P     KY L   + H+GR    GHY    R  +  W   DD  V  +    V + +AY+LFY
Sbjct:  219 SDAYRRSLVHKIFGGSLRSQVKCEQCSHCSNKFDPFLDLSLDI--SKADSLQRALSRFTAVELLDNGAKVYQCERCKQK--VKAKKQLTVSKAPYVLTVHLKRFE--AHRSEKIDRKVDFTSAIDM-KPFVSGPHEGNLKYTLYGVLVHYGRSSHSGHYACFVRTSSGMWYSLDDNRVVQVSEKTVFNQKAYMLFY 407          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP4_BOVIN (Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.247e-13
Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  211 IEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            + D + LF+  E L  +      N      A K   + +L KIL++HL RFSY      KL   V FP++ +   + +  PSA    Y+L+A   H+G     GHYTA A+   N +W +FDD++V+     +++   AYVLFY++
Sbjct:  778 LRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLNMSEFVCDPSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLACEDQIVTKAAYVLFYQR 922          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP2_MOUSE (Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.247e-13
Identity = 67/195 (34.36%), Postives = 98/195 (50.26%), Query Frame = 1
Query:   82 SALSDIFGGQLKSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVK---IQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            S + D+F GQLKS +        +TV  PF  L L I    Y E   T+ D +RLF+  + L+G    +         K+ +K   +Q   KIL+LHL RFS     ++KL   V FPL+ +  R+   + +     Y L A V++H      GHYTA  R     +W  F+D+SVT + +S+V    AY+LFY+
Sbjct:  417 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDILDGDEKPTCCRCRA--RKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE-FASENTNHAVYNLYA-VSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 605          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP16_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 16 OS=Schizosaccharomyces pombe GN=ubp16 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.247e-13
Identity = 58/189 (30.69%), Postives = 88/189 (46.56%), Query Frame = 1
Query:   82 SALSDIFGGQLKS-VVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAG-VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            S +  IFGG L+  ++ +   K S T Q  L L +D    +   + D+L+ F   E L         N   +V A K + I     IL +H  RF++    S+K+ K + +P    LG   +  P+     YEL+  + H G     GHY +  +  N  WL FDD  V+     +VL+ QAY+L YK+
Sbjct:  245 SVVHRIFGGYLRQQILCSVCKKPSNTYQALLDLSVDAKGSS---LADSLKHFVHAEKLTKQNKYRCENCKQLVDASKQMTIYRAPNILTIHFKRFTFNGFQSSKISKQISYPESFNLG-PYMSDPNCSCW-YELIGVLVHAGGSTRSGHYYSFCKSSNGVWLKFDDDFVSNSSIDRVLNQQAYILQYKR 428          
The following BLAST results are available for this feature:
BLAST of CX290251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP9_YEAST5.599e-1428.50Ubiquitin carboxyl-terminal hydrolase 9 OS=Sacchar... [more]
UBP8_YEAST5.599e-1430.73Ubiquitin carboxyl-terminal hydrolase 8 OS=Sacchar... [more]
UBP36_DROVI5.599e-1433.16Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosop... [more]
UBP33_XENTR5.599e-1435.81Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopu... [more]
UBP15_MOUSE7.312e-1432.88Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus mu... [more]
UBP15_HUMAN7.312e-1432.88Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo s... [more]
UBP23_ARATH9.550e-1430.10Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabid... [more]
UBP4_BOVIN1.247e-1333.56Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos tau... [more]
UBP2_MOUSE1.247e-1334.36Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus mus... [more]
UBP16_SCHPO1.247e-1330.69Probable ubiquitin carboxyl-terminal hydrolase 16 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02022B09SK IF1 Citrus clementina cDNA clone C02022B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290251 ID=CX290251; Name=CX290251; organism=Citrus clementina; type=EST; length=766bp
GAATTCGGCACGAGGGATGAATGGGAAACAGTTGGCCCAAAGAACAAATC
TGCAGTGACAAGAACACAGAGCTTCCTGCCTTCAGCACTTAGTGATATAT
TTGGAGGACAGCTGAAAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCT
GCAACTGTTCAGCCATTTCTCTTGCTCCACCTTGATATTTACTCTGAAGC
TGTGCATACAATTGAGGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATC
TTGAGGGATACCGTACATCATCTACTGGAAATGCTGGTGTTGTGACTGCC
AAAAAATCTGTCAAGATACAGACGCTTTCAAAGATTTTGATTTTACACCT
GATGCGTTTTAGTTATGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTG
TCCGTTTTCCTCTTCAATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCA
TCTGCTGAGGGTCGAAAATATGAACTTGTTGCCACAGTTACCCACCATGG
AAGAGATCCCTCGAAGGGGCATTATACTGCTGATGCTCGGTATTTTAATG
ACCAGTGGCTCCATTTTGACGATGCCTCTGTGACTGCTATTGGGACAAGT
AAGGTATTGCATGACCAGGCATACGTCCTTTTCTACAAACAAGTTTAGAA
GGTTGCAGGATTATAAGTTTCAATGGGAGAAAGAAGCCATATCTGATGGA
TTCAACCAATGACAGTAGCTGAACTGTTTTCTTAATTTGCAGTAGTTTTT
AAAATGTTGTAATGCA
back to top