CX290251

Overview
NameCX290251
Unique NameCX290251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP13_YEAST (Ubiquitin carboxyl-terminal hydrolase 13 OS=Saccharomyces cerevisiae GN=UBP13 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.247e-13
Identity = 58/196 (29.59%), Postives = 92/196 (46.94%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGST--KLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH--------DQAYVLFYK 639
            +SD+F G L + +K    +  ++  +PFL   +++  +    I++ L+ +   E L G          G+  A++ V ++ L   L LHL RF Y  + +   KL  ++ +PL L +   +    S   +KYEL   V H G  P  GHY +  ++    WL FDD +V A+    VL           AYVLFYK
Sbjct:  474 ISDLFQGTLTNQIKCLTCDNITSRDEPFLDFPIEVQGDEETDIQEILKSYHQREMLNGSNKFYCDECCGLQEAERLVGLKQLPDTLTLHLKRFKYSEKQNCNIKLFNNIHYPLTLNVCSSI---NSKVCQKYELAGIVVHMGGGPQHGHYVSLCKHEKFGWLLFDDETVEAVKEETVLEFTGESPNMATAYVLFYK 666          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: U17L1_HUMAN (Putative ubiquitin carboxyl-terminal hydrolase 17-like protein 1 OS=Homo sapiens GN=USP17L1P PE=5 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.247e-13
Identity = 62/187 (33.16%), Postives = 87/187 (46.52%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            +  IFGG  +S +K    +  S T  P+L + LDI  +A  +++ AL     PE L G      G       A  ++ + T +K+LIL L RFS       KL K+V++P  L + +  +   +     Y L A + H G     GHY +  +    QW   DDA VT      VL  QAYVLFY Q
Sbjct:  193 IHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFS--DVAGNKLAKNVQYPECLDM-QPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQ 374          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP36_DROPS (Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila pseudoobscura pseudoobscura GN=Usp36 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 61/187 (32.62%), Postives = 89/187 (47.59%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK--YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            L+ IFGG L+S V+    +  S T Q F  L LDI      T+E+A   + + E LE       G    V+A K   ++     L + L RFS       KL K++ F  ++ L R    +P+A  +   Y LV+ VTH G     GHYTA     +  + +FDD+ V  I    V +  AY++FY+
Sbjct:  296 LNQIFGGYLRSEVRCLSCSHVSITFQHFQDLLLDIRKS--DTLEEAFDGYFSRERLEDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFS---MIGNKLTKTISFKPRIDLSRFAARSPAAAAQPLTYRLVSMVTHLGVSQHCGHYTAIGMTESGSYYNFDDSYVRPIAMQSVCNTNAYIMFYE 477          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP36_DROAN (Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila ananassae GN=Usp36 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 60/187 (32.09%), Postives = 88/187 (47.06%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK--YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            L  IFGG L+S V+    N  S T Q F  L LDI      ++E+A   + + E LE +     G    V+A K  +++     L + L RFS       KL K + F  ++ L +    +P+A  +   Y LV+ VTH G     GHYTA        + +FDD+ V  I    V +  AY++FY+
Sbjct:  301 LGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDIRKS--DSLEEAFEGYFSREKLEDFGYKCEGCKKKVSATKQFRLERAPITLCIQLKRFS---MMGNKLTKQITFKPRIDLSKFAARSPAASVQPLIYRLVSMVTHLGVSQHCGHYTAIGSTEAGSYYNFDDSYVRPIAIQSVCNTNAYIMFYE 482          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP27_MOUSE (Ubiquitin carboxyl-terminal hydrolase 27 OS=Mus musculus GN=Usp27 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 66/225 (29.33%), Postives = 95/225 (42.22%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----------------------YSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQL-------------VLGRDLLVTPSAEGR-KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY-KQV 645
            +  IF G L+S V  Q  +  S T+ P   + LD+                      +   + T+ D LR F+ PE+L        G+      + K + ++ L  +   H  RF + ++   K+   + FPL+L             V G+  L T SA    KY L A V H G   S GHYT+  R+  DQW   DDA +T      VL  + Y+LFY KQV
Sbjct:  199 IDQIFTGGLQSDVTCQACHGVSTTIDPCWDISLDLPGSCTSFWPMSPGRESSLNGESHIPGITTLTDCLRRFTRPEHLGSSAKIKCGSCQSYQESTKQLTMKKLPVVACFHFKRFEHSAKQRRKITTYISFPLELDMTPFMASSKETRVNGQLQLPTNSANNENKYSLFAVVNHQGTLES-GHYTSFIRHHRDQWFKCDDAVITKASIKDVLDSEGYLLFYHKQV 422          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: U17L4_HUMAN (Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4 OS=Homo sapiens GN=USP17L4 PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.629e-13
Identity = 61/187 (32.62%), Postives = 88/187 (47.06%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            +  IFGG  +S +K    +  S T  P+L + LDI  +A  +++ AL     PE L G      G       A  ++ + T +K+LIL L RFS       KL K+V++P  L + +  +   +     Y L A + H G     G+Y +  +    QW   DDA VT    + VL  QAYVLFY Q
Sbjct:  193 IHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFS--DVAGNKLAKNVQYPECLDM-QPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQ 374          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP4_MOUSE (Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  298 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            A K   + +L KIL++HL RFSY      KL   V FP++ +   + +   SA    Y+L+A   H+G     GHYTA A+   N +W +FDD+SV+     +++   AYVLFY++
Sbjct:  807 ATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQR 921          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: U17L8_HUMAN (Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 8 OS=Homo sapiens GN=USP17L8 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.779e-13
Identity = 61/187 (32.62%), Postives = 88/187 (47.06%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            +  IFGG  +S +K    +  S T  P+L + LDI  +A  +++ AL     PE L G      G       A  ++ + T +K+LIL L RF        KL K+V++P  L + +  +   +     Y L A + H G     G+Y +  +    QW   DDA VTA   + VL  QAYVLFY Q
Sbjct:  193 IHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVKQALEQLVKPEELNGENAYPCGLCLQRAPASNTLTLHTSAKVLILVLKRFC--DVTGNKLAKNVQYPECLDM-QPYMSQQNTGPLVYVLYAVLVHAGWSCHNGYYFSYVKAQEGQWYKMDDAEVTACSITSVLSQQAYVLFYIQ 374          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP36_MOUSE (Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.629e-13
Identity = 65/195 (33.33%), Postives = 89/195 (45.64%), Query Frame = 1
Query:   67 QSFLPSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 645
            Q+   + +  IFGG L+S VK    K+ S T  P+L + L+I   A   I  AL LF   + L G            V A K   I   S +L L L RF+  S G  K+ K V +P  L + R  +   S +   Y L A + H G     GHY    +  N QW   +D+ V +     VL+ QAYVLFY ++
Sbjct:  234 QTQATTLVHQIFGGYLRSRVKCSVCKSVSDTYDPYLDIALEIRQAA--NIVRALELFVKSDVLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKRFANFSGG--KITKDVGYPEFLNI-RPYMSQSSGDPVMYGLYAVLVHSGYSCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLRI 423          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP4_HUMAN (Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  211 IEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            + D + LF+  E L  +      N      A K   + +L KIL++HL RFSY      KL   V FP++ +   + +   SA    Y+L+A   H+G     GHYTA A+   N +W +FDD++V+     +++   AYVLFY++
Sbjct:  778 LRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 922          
The following BLAST results are available for this feature:
BLAST of CX290251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP13_YEAST1.247e-1329.59Ubiquitin carboxyl-terminal hydrolase 13 OS=Saccha... [more]
U17L1_HUMAN1.247e-1333.16Putative ubiquitin carboxyl-terminal hydrolase 17-... [more]
UBP36_DROPS1.629e-1332.62Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosop... [more]
UBP36_DROAN1.629e-1332.09Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosop... [more]
UBP27_MOUSE1.629e-1329.33Ubiquitin carboxyl-terminal hydrolase 27 OS=Mus mu... [more]
U17L4_HUMAN1.629e-1332.62Inactive ubiquitin carboxyl-terminal hydrolase 17-... [more]
UBP4_MOUSE2.128e-1337.07Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus mus... [more]
U17L8_HUMAN2.779e-1332.62Inactive ubiquitin carboxyl-terminal hydrolase 17-... [more]
UBP36_MOUSE3.629e-1333.33Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus mu... [more]
UBP4_HUMAN4.740e-1332.88Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC02022B09SK IF1 Citrus clementina cDNA clone C02022B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290251 ID=CX290251; Name=CX290251; organism=Citrus clementina; type=EST; length=766bp
GAATTCGGCACGAGGGATGAATGGGAAACAGTTGGCCCAAAGAACAAATC
TGCAGTGACAAGAACACAGAGCTTCCTGCCTTCAGCACTTAGTGATATAT
TTGGAGGACAGCTGAAAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCT
GCAACTGTTCAGCCATTTCTCTTGCTCCACCTTGATATTTACTCTGAAGC
TGTGCATACAATTGAGGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATC
TTGAGGGATACCGTACATCATCTACTGGAAATGCTGGTGTTGTGACTGCC
AAAAAATCTGTCAAGATACAGACGCTTTCAAAGATTTTGATTTTACACCT
GATGCGTTTTAGTTATGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTG
TCCGTTTTCCTCTTCAATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCA
TCTGCTGAGGGTCGAAAATATGAACTTGTTGCCACAGTTACCCACCATGG
AAGAGATCCCTCGAAGGGGCATTATACTGCTGATGCTCGGTATTTTAATG
ACCAGTGGCTCCATTTTGACGATGCCTCTGTGACTGCTATTGGGACAAGT
AAGGTATTGCATGACCAGGCATACGTCCTTTTCTACAAACAAGTTTAGAA
GGTTGCAGGATTATAAGTTTCAATGGGAGAAAGAAGCCATATCTGATGGA
TTCAACCAATGACAGTAGCTGAACTGTTTTCTTAATTTGCAGTAGTTTTT
AAAATGTTGTAATGCA
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