CX290251

Overview
NameCX290251
Unique NameCX290251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP36_DROSI (Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila simulans GN=Usp36 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK--YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            L  IFGG L+S V+    N  S T Q F  L LDI      ++EDA     + E LE       G    V+A K   ++     L + L RFS       KL K + F  ++ L +    +P+A+ +   Y LV+ VTH G     GHYTA        + +FDD+ V  I    V +  AY++F++
Sbjct:  203 LGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDI--RKADSLEDAFEGHFSRERLEDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFS---MIGNKLTKQISFKPRIDLSKYAARSPAAQAQPLTYRLVSMVTHLGASQHCGHYTAIGSTDTGSFYNFDDSYVRPITMQNVCNTNAYIMFFE 384          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: NOT_DROME (Ubiquitin carboxyl-terminal hydrolase nonstop OS=Drosophila melanogaster GN=not PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 54/192 (28.12%), Postives = 88/192 (45.83%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVH------TIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR-KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            +  IF G L+S V  Q  N  S T  PF  + LD+     H      T+ D L  ++  E+L    +   +       + K   ++TL  ++  HL RF + +    K+   ++FP++  +   +    +A G  ++ L A V H G   + GHYTA  R+  D W+  DD  +T     +VL  + Y+LFY
Sbjct:  537 IDQIFTGMLQSDVVCQACNGVSTTYDPFWDISLDLGETTTHGGVTPKTLIDCLERYTRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLKRFEHSALIDRKISSFIQFPVEFDMTPFMSEKKNAYGDFRFSLYAVVNHVGTIDT-GHYTAYVRHQKDTWVKCDDHVITMASLKQVLDSEGYLLFY 727          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP4_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 4 OS=Schizosaccharomyces pombe GN=ubp4 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.190e-13
Identity = 68/221 (30.77%), Postives = 100/221 (45.25%), Query Frame = 1
Query:   19 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQG-NKASATVQPF--LLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHD---QAYVLFYKQ 642
            EW      NKS V              F GQL S  +     + S T  PF  L + +D  S  V ++++ L  FSAPE L+G+         V  +AKK + I  L + LI+ + RF     G  K+   +   LQ+     +LV PS +         Y L A + H+G+    GHY +D   FN++W H DD+ V  +G    L +    +Y+LFYK+
Sbjct:  213 EWNLHLRSNKSIVVNN-----------FVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDDVSHVV-SLQECLLKFSAPELLQGHDGWHCPVCKVQRSAKKVIMISKLPEYLIIQIQRFKISVMGRKKIDTPLGLSLQIP--SKMLVPPSFQSGIGYIPSNYNLFAFICHYGQ-LENGHYISDV-LFNNEWCHIDDSIVRTVGGITDLREDFSSSYILFYKR 417          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP4_PONAB (Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.190e-13
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  211 IEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            + D + LF+  E L  +      N      A K   + +L KIL++HL RFSY      KL   V FP++ +   + +   SA    Y+L+A   H+G     GHYTA A+   N +W +FDD++V+     +++   AYVLFY++
Sbjct:  778 LRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKSDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 922          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP49_HUMAN (Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.190e-13
Identity = 69/219 (31.51%), Postives = 98/219 (44.75%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIE--------------DALRLFSAPENLEGY-----------RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY-GSQGSTKLHKSVRFPLQLVLG----RDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQ---WLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            ++ IF GQL S V     N  S T++PF  L L+ + E  H IE              + L  F+  E LEG            R S+     +  A+K + I  L ++L LHL RF + G     K+   V F   L +     RD+L +   E   Y+L A V HHG+    GHYTA    +N +   W+H +D+ +      +V   QAY+LFY Q
Sbjct:  441 VNTIFHGQLLSQVTCISCNYKSNTIEPFWDLSLE-FPERYHCIEKGFVPLNQTECLLTEMLAKFTETEALEGRIYACDQCNSKRRKSNPKPLVLSEARKQLMIYRLPQVLRLHLKRFRWSGRNHREKIGVHVVFDQVLTMEPYCCRDMLSSLDKETFAYDLSAVVMHHGKGFGSGHYTAYC--YNTEGGFWVHCNDSKLNVCSVEEVCKTQAYILFYTQ 656          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP36_DROYA (Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila yakuba GN=Usp36 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.190e-13
Identity = 60/187 (32.09%), Postives = 85/187 (45.45%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK--YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            L  IFGG L+S V+    N  S T Q F  L LDI      ++EDA     + E LE       G    V+A K   ++     L + L RFS       KL K +    ++ L +    +P+A+ +   Y LV+ VTH G     GHYTA        + +FDD+ V  I    V +  AY++FY+
Sbjct:  298 LGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDI--RKADSLEDAFEGHFSRERLEDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFS---MIGNKLTKQISLKPRIDLSKYAARSPAAQAQPLTYRLVSMVTHLGVSQHCGHYTAIGSTDTGSYYNFDDSYVRPIAMQSVCNTNAYIMFYE 479          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP15_ARATH (Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.190e-13
Identity = 60/189 (31.75%), Postives = 94/189 (49.74%), Query Frame = 1
Query:   97 IFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK---YELVATVTHHG--RDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            +FGG+L+S VK  + +  S   +  + L L+IY   V +++DAL  F+ PE+L+G   YR S    AG V A+K + I     IL + L RF  G  G  K++K + FP  L    D++   +  G     Y L A + H         GHY +  +     W   DD+ +  +  ++V+ + AY+LFY
Sbjct:  562 MFGGRLRSKVKCLRCDHESERYENIMDLTLEIYGW-VESLQDALTQFTRPEDLDGENMYRCSRC--AGYVRARKELSIHEAPNILTIVLKRFQEGRYG--KINKCISFPEML----DMIPFMTRTGDVPPLYMLYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDSEIHPVPMTQVMSEGAYMLFY 741          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP27_HUMAN (Ubiquitin carboxyl-terminal hydrolase 27 OS=Homo sapiens GN=USP27X PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 66/227 (29.07%), Postives = 99/227 (43.61%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----------------------YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILIL---HLMRFSYGSQGSTKLHKSVRFPLQLVL-------------GRDLLVTPSAEGR-KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY-KQV 645
            +  IF G L+S V  Q  +  S T+ P   + LD+                      +   + T+ D LR F+ PE+L        G+    + ++S K  T++K+ ++   H  RF + ++   K+   + FPL+L +             G+  L T S     KY L A V H G   S GHYT+  R+  DQW   DDA +T      VL  + Y+LFY KQV
Sbjct:  199 IDQIFTGGLQSDVTCQACHGVSTTIDPCWDISLDLPGSCTSFWPMSPGRESSVNGESHIPGITTLTDCLRRFTRPEHLGSSAKIKCGSCQ--SYQESTKQLTMNKLPVVACFHFKRFEHSAKQRRKITTYISFPLELDMTPFMASSKESRMNGQLQLPTNSGNNENKYSLFAVVNHQGTLES-GHYTSFIRHHKDQWFKCDDAVITKASIKDVLDSEGYLLFYHKQV 422          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP25_ARATH (Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 58/195 (29.74%), Postives = 96/195 (49.23%), Query Frame = 1
Query:   82 SALSDIFGGQLKSVVK-----AQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            S + +IFGG L+S VK     A+ NKA   +     + L+I   +  +++++L+ F   E L+G   YR  S     +VTA+K + I     IL++ L RF  G     K+ K++ F   LVL   +         +Y+L   + H G  P  GHY A  +    +W   +D+ V+     +VL ++AY+LF+ +
Sbjct:  150 SVVKEIFGGALQSQVKCLSCGAESNKADEIMD----ISLEILQSS--SVKESLQKFFQSEILDGNNKYRCESCEK--LVTARKQMSILQAPNILVIQLKRF--GGIFGGKIDKAISFGEILVLSNFMSKASKDPQPEYKLFGIIVHSGFSPESGHYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSR 334          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP20_DANRE (Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio GN=usp20 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 51/148 (34.46%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  208 TIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPS-AEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            T+ED L  F A + L+G    S      +    K  K+  L +IL +HL RF +    S K++  V FPL+ +  +  L   S ++   Y+L++ + HHG   S GHY A  +   N QW  FDD  VT +  + V + +AYVLFY++
Sbjct:  538 TLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLKPFLAKESPSQITTYDLLSVICHHGTAGS-GHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRK 684          
The following BLAST results are available for this feature:
BLAST of CX290251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP36_DROSI4.740e-1332.09Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosop... [more]
NOT_DROME4.740e-1328.13Ubiquitin carboxyl-terminal hydrolase nonstop OS=D... [more]
UBP4_SCHPO6.190e-1330.77Probable ubiquitin carboxyl-terminal hydrolase 4 O... [more]
UBP4_PONAB6.190e-1332.88Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo a... [more]
UBP49_HUMAN6.190e-1331.51Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo s... [more]
UBP36_DROYA6.190e-1332.09Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosop... [more]
UBP15_ARATH6.190e-1331.75Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabid... [more]
UBP27_HUMAN8.085e-1329.07Ubiquitin carboxyl-terminal hydrolase 27 OS=Homo s... [more]
UBP25_ARATH8.085e-1329.74Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabid... [more]
UBP20_DANRE8.085e-1334.46Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionC02022B09SK IF1 Citrus clementina cDNA clone C02022B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290251 ID=CX290251; Name=CX290251; organism=Citrus clementina; type=EST; length=766bp
GAATTCGGCACGAGGGATGAATGGGAAACAGTTGGCCCAAAGAACAAATC
TGCAGTGACAAGAACACAGAGCTTCCTGCCTTCAGCACTTAGTGATATAT
TTGGAGGACAGCTGAAAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCT
GCAACTGTTCAGCCATTTCTCTTGCTCCACCTTGATATTTACTCTGAAGC
TGTGCATACAATTGAGGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATC
TTGAGGGATACCGTACATCATCTACTGGAAATGCTGGTGTTGTGACTGCC
AAAAAATCTGTCAAGATACAGACGCTTTCAAAGATTTTGATTTTACACCT
GATGCGTTTTAGTTATGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTG
TCCGTTTTCCTCTTCAATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCA
TCTGCTGAGGGTCGAAAATATGAACTTGTTGCCACAGTTACCCACCATGG
AAGAGATCCCTCGAAGGGGCATTATACTGCTGATGCTCGGTATTTTAATG
ACCAGTGGCTCCATTTTGACGATGCCTCTGTGACTGCTATTGGGACAAGT
AAGGTATTGCATGACCAGGCATACGTCCTTTTCTACAAACAAGTTTAGAA
GGTTGCAGGATTATAAGTTTCAATGGGAGAAAGAAGCCATATCTGATGGA
TTCAACCAATGACAGTAGCTGAACTGTTTTCTTAATTTGCAGTAGTTTTT
AAAATGTTGTAATGCA
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