CX290251

Overview
NameCX290251
Unique NameCX290251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP10_ARATH (Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  298 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFND-QWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 645
            A K + +  L  IL+ HL RF+Y      K+   V FP+  +     +   + +   YEL A   H+G     GHYTA A+  +D +W HFDD+ V+++  S++ +  AYVLFY++V
Sbjct:  780 ANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNGQSYLYELYAVSNHYG-GLGGGHYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRRV 895          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP9_ARATH (Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.056e-12
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  298 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFND-QWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 645
            A K + +  L  IL+ HL RF+Y      K+   V FP+  +     +   + +   YEL A   H+G     GHYTA A+  +D +W HFDD+ V+++  S++ +  AYVLFY++V
Sbjct:  779 ANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNDQSYLYELYAVSNHYG-GLGGGHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRV 894          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP36_HUMAN (Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.056e-12
Identity = 66/203 (32.51%), Postives = 91/203 (44.83%), Query Frame = 1
Query:   43 NKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 645
            N  A    Q+   + +  IFGG L+S VK    K+ S T  P+L + L+I   A   I  AL LF   + L G            V A K   I   S +L L L RF+  S G  K+ K V +P  L + R  +   + +   Y L A + H G     GHY    +  N QW   +D+ V +     VL+ QAYVLFY ++
Sbjct:  226 NGCAKLDRQTQATTLVHQIFGGYLRSRVKCSVCKSVSDTYDPYLDVALEIRQAA--NIVRALELFVKADVLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKRFANFSGG--KITKDVGYPEFLNI-RPYMSQNNGDPVMYGLYAVLVHSGYSCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLRI 423          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP22_MOUSE (Ubiquitin carboxyl-terminal hydrolase 22 OS=Mus musculus GN=Usp22 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.056e-12
Identity = 66/226 (29.20%), Postives = 97/226 (42.92%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI-----------------------YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILIL---HLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR----------------KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            +  IF G L+S V  Q  +  S T+ PF  + LD+                       ++    T+ D LR F+ PE+L    ++    +G  + ++S K  T+ K+ I+   HL RF + ++   K+   V FPL+L +     +  S E R                KY L A V H G   S GHYT+  R   DQW   DDA +T      VL  + Y+LFY
Sbjct:  297 IDQIFTGGLQSDVTCQVCHGVSTTIDPFWDISLDLPGSSTPFWPLSPGSEGSVVNGESHASGTTTLTDCLRRFTRPEHLGS--SAKIKCSGCHSYQESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTP--FMASSKESRMNGQYQQPLDSLNNDNKYSLFAVVNHQGTLES-GHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFY 517          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP20_XENTR (Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis GN=usp20 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.056e-12
Identity = 51/148 (34.46%), Postives = 73/148 (49.32%), Query Frame = 1
Query:  208 TIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEG-RKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            T+ED L  F A + L+G    S      +    K  K+  L +IL +HL RF +    S K+   V FPL+ +  R  L          Y+L+A + HHG   S GHY +  +   N QW  FDD  VT +  + V + +AYVLFY++
Sbjct:  508 TLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKIGSHVSFPLEGLNLRPFLAKECVSRITTYDLLAVICHHG-SASSGHYISYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRK 654          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP20_BOVIN (Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.056e-12
Identity = 52/150 (34.67%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  202 VHTIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTP-SAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            V T+ED L  F A + L+G    S      +    K  K+  L +IL +HL RF +    S K+   V FPL+ +  R  L    +++   Y+L++ + HHG   S GHY A  +   N QW  FDD  VT +  + V + +AYVLFY++
Sbjct:  534 VVTLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKISSHVSFPLEGLDLRPFLAKECTSQITTYDLLSVICHHGTAGS-GHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRK 682          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP20_XENLA (Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus laevis GN=usp20 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.379e-12
Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = 1
Query:  208 TIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEG-RKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            T+ED L  F A + L+G    S      +    K  K+  L ++L +HL RF +    S K+   V FPL+ +  R  L          Y+L+A + HHG   S GHY +  +   N QW  FDD  VT +  + V + +AYVLFY++
Sbjct:  464 TLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLRLPEVLCIHLKRFRHEVMYSFKIGSHVSFPLEGLNLRPFLAKECVSRITTYDLLAVICHHG-SASSGHYISYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRK 610          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP22_BOVIN (Ubiquitin carboxyl-terminal hydrolase 22 OS=Bos taurus GN=USP22 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 66/226 (29.20%), Postives = 97/226 (42.92%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI-----------------------YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILIL---HLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR----------------KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            +  IF G L+S V  Q  +  S T+ PF  + LD+                       +     T+ D LR F+ PE+L    ++    +G  + ++S K  T+ K+ I+   HL RF + ++   K+   V FPL+L +     +  S E R                KY L A V H G   S GHYT+  R   DQW   DDA +T    + VL  + Y+LFY
Sbjct:  286 IDQIFTGGLQSDVTCQVCHGVSTTIDPFWDISLDLPGSSTPFWPLSPGSESSVVNGESHVSGTTTLTDCLRRFTRPEHLGS--SAKIKCSGCHSYQESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTP--FMASSKESRMNGQYQQPTDSLNNDNKYSLFAVVNHQGTLES-GHYTSFIRQHKDQWFKCDDAIITKASIADVLDSEGYLLFY 506          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP21_HUMAN (Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 63/193 (32.64%), Postives = 88/193 (45.60%), Query Frame = 1
Query:   82 SALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            S + D+F GQLKS +K Q     S T + F  L L I    ++    ++ D   LF+  E LE             T + K + +Q   +IL+LHL RFS       K    V FPLQ L LG     +  A    Y+L A   H G     GHYTA  R     W  ++D+ V+ +  ++V   + YVLFY+
Sbjct:  368 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 556          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP21_BOVIN (Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 63/193 (32.64%), Postives = 88/193 (45.60%), Query Frame = 1
Query:   82 SALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            S + D+F GQLKS +K Q     S T + F  L L I    ++    ++ D   LF+  E LE             T + K + +Q   +IL+LHL RFS       K    V FPLQ L LG     +  A    Y+L A   H G     GHYTA  R     W  ++D+ V+ +  ++V   + YVLFY+
Sbjct:  368 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 556          
The following BLAST results are available for this feature:
BLAST of CX290251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP10_ARATH8.085e-1335.04Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabid... [more]
UBP9_ARATH1.056e-1235.04Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabido... [more]
UBP36_HUMAN1.056e-1232.51Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo s... [more]
UBP22_MOUSE1.056e-1229.20Ubiquitin carboxyl-terminal hydrolase 22 OS=Mus mu... [more]
UBP20_XENTR1.056e-1234.46Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopu... [more]
UBP20_BOVIN1.056e-1234.67Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos ta... [more]
UBP20_XENLA1.379e-1233.78Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopu... [more]
UBP22_BOVIN1.801e-1229.20Ubiquitin carboxyl-terminal hydrolase 22 OS=Bos ta... [more]
UBP21_HUMAN1.801e-1232.64Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo s... [more]
UBP21_BOVIN1.801e-1232.64Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionC02022B09SK IF1 Citrus clementina cDNA clone C02022B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290251 ID=CX290251; Name=CX290251; organism=Citrus clementina; type=EST; length=766bp
GAATTCGGCACGAGGGATGAATGGGAAACAGTTGGCCCAAAGAACAAATC
TGCAGTGACAAGAACACAGAGCTTCCTGCCTTCAGCACTTAGTGATATAT
TTGGAGGACAGCTGAAAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCT
GCAACTGTTCAGCCATTTCTCTTGCTCCACCTTGATATTTACTCTGAAGC
TGTGCATACAATTGAGGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATC
TTGAGGGATACCGTACATCATCTACTGGAAATGCTGGTGTTGTGACTGCC
AAAAAATCTGTCAAGATACAGACGCTTTCAAAGATTTTGATTTTACACCT
GATGCGTTTTAGTTATGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTG
TCCGTTTTCCTCTTCAATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCA
TCTGCTGAGGGTCGAAAATATGAACTTGTTGCCACAGTTACCCACCATGG
AAGAGATCCCTCGAAGGGGCATTATACTGCTGATGCTCGGTATTTTAATG
ACCAGTGGCTCCATTTTGACGATGCCTCTGTGACTGCTATTGGGACAAGT
AAGGTATTGCATGACCAGGCATACGTCCTTTTCTACAAACAAGTTTAGAA
GGTTGCAGGATTATAAGTTTCAATGGGAGAAAGAAGCCATATCTGATGGA
TTCAACCAATGACAGTAGCTGAACTGTTTTCTTAATTTGCAGTAGTTTTT
AAAATGTTGTAATGCA
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