CX290251

Overview
NameCX290251
Unique NameCX290251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP20_PONAB (Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii GN=USP20 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 51/150 (34.00%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  202 VHTIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTP-SAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            V T+ED L  F A + L+G    S      +    K  K+  L +IL +HL RF +    S K++  V FPL+ +  R  L    +++   Y+L++ + HHG   S GHY A  +   N QW  FDD  VT +  + V + + YVLFY++
Sbjct:  535 VVTLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLRPFLAKECTSQITTYDLLSVICHHGTAGS-GHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEGYVLFYRK 683          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP20_MOUSE (Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 52/150 (34.67%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  202 VHTIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTP-SAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            V T+ED L  F A + L+G    S      +    K  K+  L +IL +HL RF +    S K+   V FPL+ +  R  L    +++   Y+L++ + HHG   S GHY A  +   N QW  FDD  VT +  + V + +AYVLFY++
Sbjct:  538 VVTLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLCLPEILCVHLKRFRHEVMYSFKVSSHVSFPLEGLDLRPFLAKECTSQVTTYDLLSVICHHGTAGS-GHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNVEAYVLFYRK 686          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP20_HUMAN (Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.801e-12
Identity = 51/150 (34.00%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  202 VHTIEDALRLFSAPENLEGYRTSSTGNAGVV-TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTP-SAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            V T+ED L  F A + L+G    S      +    K  K+  L +IL +HL RF +    S K++  V FPL+ +  R  L    +++   Y+L++ + HHG   S GHY A  +   N QW  FDD  VT +  + V + + YVLFY++
Sbjct:  536 VVTLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLRPFLAKECTSQITTYDLLSVICHHGTAGS-GHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEGYVLFYRK 684          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP49_MOUSE (Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 68/217 (31.34%), Postives = 97/217 (44.70%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIE--------------DALRLFSAPENLEGY-----------RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY-GSQGSTKLHKSVRFPLQLVLG----RDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQ---WLHFDDASVTAIGTSKVLHDQAYVLFY 636
            ++ IF GQL S V     N  S T++PF  L L+ + E  H IE              + L  F+  E LEG            R S+     +  A+K + I  L ++L LHL RF + G     K+   V F   L +     RD+L +   E   Y+L A V HHG+    GHYTA    +N +   W+H +D+ +      +V   QAY+LFY
Sbjct:  438 VNTIFHGQLLSQVTCISCNYKSNTIEPFWDLSLE-FPERYHCIEKGFVPLNQTECLLTEMLAKFTETEALEGRIYACDQCNSKRRKSNPKPLVLSEARKQLMIYRLPQVLRLHLKRFRWSGRNHREKIGVHVIFDQVLTMEPYCCRDMLSSLDKETFAYDLSAVVMHHGKGFGSGHYTAYC--YNTEGGFWVHCNDSKLDVCSVEEVCKTQAYILFY 651          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP36_DROME (Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila melanogaster GN=Usp36 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 59/187 (31.55%), Postives = 85/187 (45.45%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK--YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            L  IFGG L+S V+    N  S T Q F  L LDI      ++EDA     + E LE       G    V+A K   ++     L + L RFS       KL K + F  ++ L +    + +A+ +   Y LV+ VTH G     GHYTA        + +FDD+ V  I    V +  AY++F++
Sbjct:  297 LGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDI--RKADSLEDAFEGHFSRERLEDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFS---MIGNKLTKQISFKSRIDLSKYAARSQAAQAQPLTYRLVSMVTHLGASQHCGHYTAIGSTDTGSFYNFDDSYVRPIAMHSVCNTNAYIMFFE 478          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP22_HUMAN (Ubiquitin carboxyl-terminal hydrolase 22 OS=Homo sapiens GN=USP22 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 66/226 (29.20%), Postives = 96/226 (42.48%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI-----------------------YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILIL---HLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR----------------KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            +  IF G L+S V  Q  +  S T+ PF  + LD+                       +     T+ D LR F+ PE+L    ++    +G  + ++S K  T+ K+ I+   HL RF + ++   K+   V FPL+L +     +  S E R                KY L A V H G   S GHYT+  R   DQW   DDA +T      VL  + Y+LFY
Sbjct:  297 IDQIFTGGLQSDVTCQVCHGVSTTIDPFWDISLDLPGSSTPFWPLSPGSEGNVVNGESHVSGTTTLTDCLRRFTRPEHLGS--SAKIKCSGCHSYQESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTP--FMASSKESRMNGQYQQPTDSLNNDNKYSLFAVVNHQGTLES-GHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFY 517          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP22_DANRE (Ubiquitin carboxyl-terminal hydrolase 22 OS=Danio rerio GN=usp22 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 63/224 (28.12%), Postives = 90/224 (40.18%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI-----------------------YSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR----------------KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            +  IF G L+S V  Q  +  S T+ PF  + LD+                       +     T+ D LR F+ PE+L    +   +G      + K + ++ L  +   HL RF + ++   K+   V FPL+L +     +  S E R                KY L A V H G   S GHYT   R   DQW   DDA +T      VL  + Y+LFY
Sbjct:  278 IDQIFTGGLQSDVTCQVCHGVSTTIDPFWDISLDLPGSSTPFWPLSPGSDGSVVNGDSHPSGATTLTDCLRRFTRPEHLGSSAKIKCSGCHSYQESTKQLTMKRLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTP--FMASSKESRMNGQYQQPVDSLNNDNKYSLFAVVNHQGTLES-GHYTTFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFY 498          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP21_MOUSE (Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 63/193 (32.64%), Postives = 88/193 (45.60%), Query Frame = 1
Query:   82 SALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            S + D+F GQLKS +K Q     S T + F  L L I    ++    ++ D   LF+  E LE             T + K + +Q   +IL+LHL RFS       K    V FPLQ L LG     +  A    Y+L A   H G     GHYTA  R     W  ++D+ V+ +  ++V   + YVLFY+
Sbjct:  369 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 557          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UB22A_XENLA (Ubiquitin carboxyl-terminal hydrolase 22 A OS=Xenopus laevis GN=usp22-A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 66/226 (29.20%), Postives = 96/226 (42.48%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI-----------------------YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILIL---HLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR----------------KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            +  IF G L+S V  Q  +  S T+ PF  + LD+                       +     T+ D LR F+ PE+L    ++    +G  + ++S K  T+ K+ I+   HL RF + ++   K+   V FPL+L +     +  S E R                KY L A V H G   S GHYT+  R   DQW   DDA +T      VL  + Y+LFY
Sbjct:  295 IDQIFTGGLQSDVTCQVCHGVSTTIDPFWDISLDLPGSSTPFWPLSPGSDAGVVNGESHVSGTTTLTDCLRRFTRPEHLGS--SAKIKCSGCHSYQESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTP--FMASSKESRMNGQYQQPSDSLHNDNKYSLFAVVNHQGTLES-GHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFY 515          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBPW_MOUSE (Ubiquitin carboxyl-terminal hydrolase DUB-1 OS=Mus musculus GN=Dub1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 62/191 (32.46%), Postives = 88/191 (46.07%), Query Frame = 1
Query:   82 SALSDIFGGQLKSVVKA---QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            S + DIFGG  +S +K    QG   S T   FL + LDI S    +++ AL      E L G      G     + A K++ +    K+L++ L RFS  +    KL + V +P  L L +  L  P+     Y L A + H G     GHY    +  + +W   DD  VT    + VL++ AYVLFY Q
Sbjct:  164 SPIHDIFGGWWRSQIKCLLCQGT--SDTYDRFLDIPLDISS--AQSVKQALWDTEKSEELCGDNAYYCGKCRQKMPASKTLHVHIAPKVLMVVLNRFSAFT--GNKLDRKVSYPEFLDL-KPYLSEPTGGPLPYALYAVLVHDGATSHSGHYFCCVKAGHGKWYKMDDTKVTRCDVTSVLNENAYVLFYVQ 347          
The following BLAST results are available for this feature:
BLAST of CX290251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP20_PONAB1.801e-1234.00Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo ... [more]
UBP20_MOUSE1.801e-1234.67Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus mu... [more]
UBP20_HUMAN1.801e-1234.00Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo s... [more]
UBP49_MOUSE2.352e-1231.34Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus mu... [more]
UBP36_DROME2.352e-1231.55Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosop... [more]
UBP22_HUMAN2.352e-1229.20Ubiquitin carboxyl-terminal hydrolase 22 OS=Homo s... [more]
UBP22_DANRE2.352e-1228.13Ubiquitin carboxyl-terminal hydrolase 22 OS=Danio ... [more]
UBP21_MOUSE2.352e-1232.64Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus mu... [more]
UB22A_XENLA2.352e-1229.20Ubiquitin carboxyl-terminal hydrolase 22 A OS=Xeno... [more]
UBPW_MOUSE3.072e-1232.46Ubiquitin carboxyl-terminal hydrolase DUB-1 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC02022B09SK IF1 Citrus clementina cDNA clone C02022B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290251 ID=CX290251; Name=CX290251; organism=Citrus clementina; type=EST; length=766bp
GAATTCGGCACGAGGGATGAATGGGAAACAGTTGGCCCAAAGAACAAATC
TGCAGTGACAAGAACACAGAGCTTCCTGCCTTCAGCACTTAGTGATATAT
TTGGAGGACAGCTGAAAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCT
GCAACTGTTCAGCCATTTCTCTTGCTCCACCTTGATATTTACTCTGAAGC
TGTGCATACAATTGAGGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATC
TTGAGGGATACCGTACATCATCTACTGGAAATGCTGGTGTTGTGACTGCC
AAAAAATCTGTCAAGATACAGACGCTTTCAAAGATTTTGATTTTACACCT
GATGCGTTTTAGTTATGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTG
TCCGTTTTCCTCTTCAATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCA
TCTGCTGAGGGTCGAAAATATGAACTTGTTGCCACAGTTACCCACCATGG
AAGAGATCCCTCGAAGGGGCATTATACTGCTGATGCTCGGTATTTTAATG
ACCAGTGGCTCCATTTTGACGATGCCTCTGTGACTGCTATTGGGACAAGT
AAGGTATTGCATGACCAGGCATACGTCCTTTTCTACAAACAAGTTTAGAA
GGTTGCAGGATTATAAGTTTCAATGGGAGAAAGAAGCCATATCTGATGGA
TTCAACCAATGACAGTAGCTGAACTGTTTTCTTAATTTGCAGTAGTTTTT
AAAATGTTGTAATGCA
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