CX290251

Overview
NameCX290251
Unique NameCX290251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP11_HUMAN (Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 53/163 (32.52%), Postives = 83/163 (50.92%), Query Frame = 1
Query:  187 IYSEAVHTIEDALRLFSAPENLEG----YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR----KYELVATVTHHG--RDPSKGHYTADA-RYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            +  +A   +++ + LF+  E LE     Y  S   +     A K + +  L +ILI+HL RFSY      KL   V FP++ +   + ++ P  E      KY+L+A   H+G  RD   GHYT  A    + QW +FDD SV+ +  +++    AYVLFY++
Sbjct:  773 VMKKAPVRLQECIELFTTVETLEKENPWYCPSCKQHQ---LATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRD---GHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 929          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UB22B_XENLA (Ubiquitin carboxyl-terminal hydrolase 22 B OS=Xenopus laevis GN=usp22-B PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 66/228 (28.95%), Postives = 98/228 (42.98%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI-----------------------YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILIL---HLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLL--VTPSAEGR----------------KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            +  IF G L+S V  Q  +  S T+ PF  + LD+                       +     T+ D LR F+ PE+L    ++    +G  + ++S K  T+ K+ I+   HL RF + ++   K+   V FPL+L    D++  +  S E R                KY L A V H G   S GHYT+  R   DQW   DDA +T      V+  + Y+LFY
Sbjct:  295 IDQIFTGGLQSDVTCQVCHGVSTTIDPFWDISLDLPGSSTPFWPLSPGSDAGVVNGESHVSGTTTLTDCLRRFTRPEHLGS--SAKIKCSGCHSYQESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLEL----DMMPFMASSKESRMNGQYQQPSDSLHNDNKYSLFAVVNHQGTLES-GHYTSFIRQHKDQWFKCDDAIITKASIKDVIDSEGYLLFY 515          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP21_RAT (Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus GN=Usp21 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 62/193 (32.12%), Postives = 87/193 (45.08%), Query Frame = 1
Query:   82 SALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 639
            S + D+F GQLKS +K Q     S T + F  L L I    ++    ++ D   LF+  E LE             T + K + +Q   +IL+LHL RFS       K    V FPLQ L LG     +       Y+L A   H G     GHYTA  R     W  ++D+ V+ +  ++V   + YVLFY+
Sbjct:  368 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGD--FASDKVGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 556          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP9_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 9 OS=Schizosaccharomyces pombe GN=ubp9 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.939e-12
Identity = 63/198 (31.82%), Postives = 91/198 (45.96%), Query Frame = 1
Query:   79 PSALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS---KVLHDQ-----AYVLFY 636
            P  +  +F G L S  K       ++  + FL L +DI +    ++   LR FSA E L             +  A+K +KI+ L KIL LHL RF Y    +G  KL  ++ F  ++ L        +AE R Y L + + H G  P +GHY +  R     W+ FDD +VT +  +   +   DQ     AYVLFY
Sbjct:  227 PKWVHSLFEGTLTSETKCLTCENITSRDESFLDLSIDIENHT--SVTSCLRSFSASEMLSSKNKFHCDVCKSLQEAEKRMKIKKLPKILSLHLKRFKYNETQEGHDKLFYTIVFTNEMRLFTTTEDAENAE-RMYYLSSVIVHVGGGPHRGHYVSIVRTKTYGWVLFDDENVTPVNENYLQRFFGDQPGQATAYVLFY 421          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP51_HUMAN (Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo sapiens GN=USP51 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.939e-12
Identity = 58/221 (26.24%), Postives = 93/221 (42.08%), Query Frame = 1
Query:   88 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI-----------------------YSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA---EGR----------KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            +  IF G L+S V  Q  +  S T+ P   + LD+                       +   + ++ D L+ F+ PE+L    +           + K + ++ L  +   HL RF +  +   K++  + FPL+L +   L  T  +   EG+          KY L A + HHG   S GHYT+  R   DQW   DDA +T      +L+ + Y+LFY
Sbjct:  484 IDQIFTGGLQSDVTCQACHSVSTTIDPCWDISLDLPGSCATFDSQNPERADSTVSRDDHIPGIPSLTDCLQWFTRPEHLGSSAKIKCNSCQSYQESTKQLTMKKLPIVACFHLKRFEHVGKQRRKINTFISFPLELDMTPFLASTKESRMKEGQPPTDCVPNENKYSLFAVINHHGTLES-GHYTSFIRQQKDQWFSCDDAIITKATIEDLLYSEGYLLFY 703          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP12_YEAST (Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces cerevisiae GN=UBP12 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 52/155 (33.55%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  196 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAK------KSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFND-QWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            E   T++D L+LFS PE L       T +    T K      K +++     IL++HL RF      S K+  +V FP+  L L R ++      G  Y+L A   H+G     GHYTA  + F D +W +FDD+ VT       +   AY+LFY
Sbjct:  959 ERTITLDDCLQLFSKPEIL-----GLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYG-GLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFY 1107          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP8_ARATH (Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 44/117 (37.61%), Postives = 58/117 (49.57%), Query Frame = 1
Query:  298 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 645
            A K + +  L +IL++HL RFSY      KL   V FPL  L L   +         +Y L A   H+G     GHYTA   +  D+W  FDD+ V  I   K+    AYVLFYK++
Sbjct:  754 AIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYG-SMGGGHYTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRL 869          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP5_ARATH (Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  298 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFND-QWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            A K + +  L ++L++HL RFSY      KL   V FP+  L L + +     ++ + YEL A   H+G     GHYTA  +  +D +W +FDD+ ++ I    V    AYVLFY++
Sbjct:  800 ASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYALTNHYG-GMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP11_MOUSE (Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 49/154 (31.82%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  211 IEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR----KYELVATVTHHG--RDPSKGHYTADA-RYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            +++ ++LF+  E LE    +  SS     + T  K + +  L ++LI+HL RFS+      KL   V+FP++ +   + ++ P  E      KY+L+A   H+G  RD   GHYT  A    + QW + DD SV+ +  +++    AYVLFY++
Sbjct:  740 LKECIKLFTTVETLEKENPWYCSSCKQHQLAT--KKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMRD---GHYTTFACNKDSGQWHYLDDNSVSPVNENQIESKAAYVLFYQR 888          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP12_HUMAN (Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo sapiens GN=USP12 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 66/203 (32.51%), Postives = 93/203 (45.81%), Query Frame = 1
Query:   79 PSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 639
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY A  +  +D WL FDD  V  I    +              +  Y+LFY+
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQ 367          
The following BLAST results are available for this feature:
BLAST of CX290251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP11_HUMAN4.012e-1232.52Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo s... [more]
UB22B_XENLA4.012e-1228.95Ubiquitin carboxyl-terminal hydrolase 22 B OS=Xeno... [more]
UBP21_RAT6.844e-1232.12Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus... [more]
UBP9_SCHPO8.939e-1231.82Probable ubiquitin carboxyl-terminal hydrolase 9 O... [more]
UBP51_HUMAN8.939e-1226.24Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo s... [more]
UBP12_YEAST1.167e-1133.55Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccha... [more]
UBP8_ARATH1.991e-1137.61Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabido... [more]
UBP5_ARATH1.991e-1135.04Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabido... [more]
UBP11_MOUSE1.991e-1131.82Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus mu... [more]
UBP12_HUMAN3.397e-1132.51Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC02022B09SK IF1 Citrus clementina cDNA clone C02022B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290251 ID=CX290251; Name=CX290251; organism=Citrus clementina; type=EST; length=766bp
GAATTCGGCACGAGGGATGAATGGGAAACAGTTGGCCCAAAGAACAAATC
TGCAGTGACAAGAACACAGAGCTTCCTGCCTTCAGCACTTAGTGATATAT
TTGGAGGACAGCTGAAAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCT
GCAACTGTTCAGCCATTTCTCTTGCTCCACCTTGATATTTACTCTGAAGC
TGTGCATACAATTGAGGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATC
TTGAGGGATACCGTACATCATCTACTGGAAATGCTGGTGTTGTGACTGCC
AAAAAATCTGTCAAGATACAGACGCTTTCAAAGATTTTGATTTTACACCT
GATGCGTTTTAGTTATGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTG
TCCGTTTTCCTCTTCAATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCA
TCTGCTGAGGGTCGAAAATATGAACTTGTTGCCACAGTTACCCACCATGG
AAGAGATCCCTCGAAGGGGCATTATACTGCTGATGCTCGGTATTTTAATG
ACCAGTGGCTCCATTTTGACGATGCCTCTGTGACTGCTATTGGGACAAGT
AAGGTATTGCATGACCAGGCATACGTCCTTTTCTACAAACAAGTTTAGAA
GGTTGCAGGATTATAAGTTTCAATGGGAGAAAGAAGCCATATCTGATGGA
TTCAACCAATGACAGTAGCTGAACTGTTTTCTTAATTTGCAGTAGTTTTT
AAAATGTTGTAATGCA
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