CX290251

Overview
NameCX290251
Unique NameCX290251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP12_BOVIN (Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 66/203 (32.51%), Postives = 93/203 (45.81%), Query Frame = 1
Query:   79 PSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 639
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY A  +  +D WL FDD  V  I    +              +  Y+LFY+
Sbjct:  168 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQ 366          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UB12B_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis GN=usp12-B PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 66/203 (32.51%), Postives = 93/203 (45.81%), Query Frame = 1
Query:   79 PSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 639
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY A  +  +D WL FDD  V  I    +              +  Y+LFY+
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQ 367          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UB12A_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis GN=usp12-A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 66/203 (32.51%), Postives = 93/203 (45.81%), Query Frame = 1
Query:   79 PSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 639
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY A  +  +D WL FDD  V  I    +              +  Y+LFY+
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQ 367          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP8_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 8 OS=Schizosaccharomyces pombe GN=ubp8 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 55/184 (29.89%), Postives = 87/184 (47.28%), Query Frame = 1
Query:   97 IFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQG-STKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 642
            IF G LK+VV      K    V P + + LDI      T++  L  F + E ++ Y   S G+   +   K +    L   + + L RF   +   STK+ K V +P  L +  +     + +   Y+L + V H G   + GHY A   Y+ +QW   DD ++  +  S+VL+ QAY+LFY +
Sbjct:  264 IFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEP---TLQGCLERFVSKEKVQ-YSCHSCGSKNAI---KQLVFDKLPPTICMQLKRFEQNNFAMSTKIDKQVSYPAFLRMRYNF----NQDDVDYQLYSVVCHKGTLDT-GHYIAYT-YYQNQWFLLDDTTIVEVKESEVLNSQAYLLFYHE 434          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP50_MACFA (Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Macaca fascicularis GN=USP50 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 59/189 (31.22%), Postives = 85/189 (44.97%), Query Frame = 1
Query:   82 SALSDIFGGQLK-SVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRT--SSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            S ++ +F GQL  S+V  +  K +   + F +L L I SE   +++D L+ F   + L        S       TA ++  I    KI+I HL RF        KL   + +PL  +     +     +  KY L A V H G D   GHYTA  +  F   W  FDD  V+ I  + V +  AY+LFY
Sbjct:  175 SVITQLFEGQLNYSIVCLKCEKCTYKNEVFTVLSLPIPSEYECSLQDCLQCFFQQDTLTWNNQIHCSFCETKQETAVRA-GISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLDLTPYICPIFRKYPKYNLCAVVNHFG-DLDGGHYTAFCKNSFTQAWYSFDDTRVSEIPDTSVQNATAYLLFY 361          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP12_MOUSE (Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 66/203 (32.51%), Postives = 93/203 (45.81%), Query Frame = 1
Query:   79 PSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH------------DQAYVLFYK 639
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY A  +  +D WL FDD  V  I    +              +  Y+LFY+
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPLILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQ 367          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP3_ARATH (Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 66/200 (33.00%), Postives = 91/200 (45.50%), Query Frame = 1
Query:   94 DIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVL------------HDQAYVLFYKQV 645
            +IF G L +  +  +    +A  + FL L LDI  E   +I   L+ FS+ E L             +  A+K +KI+    IL++HL RF Y  Q     KL   V FPL+L L     V P A+  +Y L A V H G  P+ GHY +  +  N  WL FDD +V  I  S V              D  Y+LFY+ +
Sbjct:  174 NIFQGILTNETRCLRCETVTARDETFLDLSLDI--EQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSN--TVEPYAD-VEYSLFAVVVHVGSGPNHGHYVSLVKSHN-HWLFFDDENVEMIEESAVQTFFGSSQEYSSNTDHGYILFYESL 367          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP16_ARATH (Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 56/183 (30.60%), Postives = 88/183 (48.09%), Query Frame = 1
Query:  100 FGGQLKSVVKAQGNKASATVQPFLL-LHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHG--RDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 636
            FGG L+S +K    +  + ++  ++ L ++I  + + T++DALR F+  E L+G      G+      AKK +KI     +L + L RF  G  G  KL+K +RFP  L L    +   S +   Y+L   + H         GHY    R  N +W   DD++V      ++L   AY+LFY
Sbjct:  667 FGGYLRSKIKCMKCQVKSELREKMMDLTVEIDGD-ISTLDDALRRFTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQAGKFG--KLNKLIRFPETLDLA-PYVSGGSEKSHDYKLYGVIVHLDVMNAAFSGHYVCYIRNQN-KWYKADDSTVVTSDVERILTKGAYMLFY 844          
BLAST of CX290251 vs. ExPASy Swiss-Prot
Match: UBP21_SCHPO (Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe GN=ubp21 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 57/182 (31.32%), Postives = 83/182 (45.60%), Query Frame = 1
Query:   82 SALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS--TKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQ-WLHFDDASVTAIGTSKVLHD 615
            +AL+DIF G++KS VK    N  S+ V+ F  + L++  + + T+ED+ R     E L G         G+  A K +  ++L  +L L L RF Y        K++    FPL++ L   L  T         ++  V  HG D   GHY A  +   D  W  FDD  VT     +VL D
Sbjct:  334 NALNDIFVGKMKSYVKCIDVNYESSRVEDFWDIQLNV--KGMDTLEDSFRDAIQVETLTGDNKYYAEGHGLQDAHKGIIFESLPNVLQLQLKRFDYDMLRDMMVKINDRHEFPLEIDLEPYLSETADKSESHVYVLHGVLVHGGDLHGGHYYALIKPEKDSNWFKFDDDRVTRATIKEVLED 513          
The following BLAST results are available for this feature:
BLAST of CX290251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP12_BOVIN3.397e-1132.51Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos ta... [more]
UB12B_XENLA3.397e-1132.51Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xeno... [more]
UB12A_XENLA3.397e-1132.51Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xeno... [more]
UBP8_SCHPO4.436e-1129.89Probable ubiquitin carboxyl-terminal hydrolase 8 O... [more]
UBP50_MACFA4.436e-1131.22Putative ubiquitin carboxyl-terminal hydrolase 50 ... [more]
UBP12_MOUSE4.436e-1132.51Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus mu... [more]
UBP3_ARATH5.794e-1133.00Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabido... [more]
UBP16_ARATH7.567e-1130.60Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabid... [more]
UBP21_SCHPO9.883e-1131.32Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC02022B09SK IF1 Citrus clementina cDNA clone C02022B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290251 ID=CX290251; Name=CX290251; organism=Citrus clementina; type=EST; length=766bp
GAATTCGGCACGAGGGATGAATGGGAAACAGTTGGCCCAAAGAACAAATC
TGCAGTGACAAGAACACAGAGCTTCCTGCCTTCAGCACTTAGTGATATAT
TTGGAGGACAGCTGAAAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCT
GCAACTGTTCAGCCATTTCTCTTGCTCCACCTTGATATTTACTCTGAAGC
TGTGCATACAATTGAGGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATC
TTGAGGGATACCGTACATCATCTACTGGAAATGCTGGTGTTGTGACTGCC
AAAAAATCTGTCAAGATACAGACGCTTTCAAAGATTTTGATTTTACACCT
GATGCGTTTTAGTTATGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTG
TCCGTTTTCCTCTTCAATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCA
TCTGCTGAGGGTCGAAAATATGAACTTGTTGCCACAGTTACCCACCATGG
AAGAGATCCCTCGAAGGGGCATTATACTGCTGATGCTCGGTATTTTAATG
ACCAGTGGCTCCATTTTGACGATGCCTCTGTGACTGCTATTGGGACAAGT
AAGGTATTGCATGACCAGGCATACGTCCTTTTCTACAAACAAGTTTAGAA
GGTTGCAGGATTATAAGTTTCAATGGGAGAAAGAAGCCATATCTGATGGA
TTCAACCAATGACAGTAGCTGAACTGTTTTCTTAATTTGCAGTAGTTTTT
AAAATGTTGTAATGCA
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