CX290254

Overview
NameCX290254
Unique NameCX290254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURCJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=metE PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.237e-37
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AF+  GWVQSYGSRCVKPPI++GD+SRPKAMTV W + AQS+T +PMKGMLTGPVTILNWSFVR+DQPR +                            +CYQ+ALAI+DEV DLE+AG+ VIQ+
Sbjct:  507 LDGYAFSQFGWVQSYGSRCVKPPILFGDISRPKAMTVEWITYAQSLTNKPMKGMLTGPVTILNWSFVRDDQPRSV----------------------------SCYQLALAIRDEVLDLEQAGVRVIQI 607

HSP 2 Score: 25.409 bits (54), Expect = 3.237e-37
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  607 IDEAALREGLP 617
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURVG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=metE PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.216e-37
Identity = 74/129 (57.36%), Postives = 91/129 (70.54%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AF+  GWVQSYGSRCVKPPI++GD+SRP AMTV W + AQS+T++PMKGMLTGPVTILNWSFVR+DQPR +                            +CYQ+ALAI+DEV DLE+AG+ VIQ+
Sbjct:  507 LDGYAFSQFGWVQSYGSRCVKPPILFGDISRPSAMTVEWIAYAQSLTSKPMKGMLTGPVTILNWSFVRDDQPRSV----------------------------SCYQLALAIRDEVLDLERAGVRVIQI 607

HSP 2 Score: 25.409 bits (54), Expect = 4.216e-37
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  607 IDEAALREGLP 617
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ALHEH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.492e-37
Identity = 79/129 (61.24%), Postives = 86/129 (66.67%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFAFT  GWVQSYGSRCVKPPIIYGDVSRP+ MTV WS  AQS+T RPMKGMLTGPVT+L WSFVR+DQP                            R ETC QIALA++DEV DLE AGI  IQ+
Sbjct:  504 LDGFAFTRAGWVQSYGSRCVKPPIIYGDVSRPRPMTVRWSEYAQSLTGRPMKGMLTGPVTVLQWSFVRDDQP----------------------------RSETCRQIALALRDEVADLEAAGIPAIQI 604

HSP 2 Score: 23.483 bits (49), Expect = 5.492e-37
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  604 IDEPALREGLP 614
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_FLAJ1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=metE PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 78/129 (60.47%), Postives = 87/129 (67.44%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPP+IYGDVSRP  MTV WS  AQS+T++ +KGMLTGPVTIL WSFVRNDQP                            R ETC QIALA++DEV DLEKAGI +IQ+
Sbjct:  512 LDGFTFTKNGWVQSYGSRCVKPPVIYGDVSRPNPMTVKWSKYAQSLTSKWVKGMLTGPVTILQWSFVRNDQP----------------------------RSETCTQIALAVRDEVVDLEKAGIKIIQI 612
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_NEIMF (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=metE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.892e-37
Identity = 81/129 (62.79%), Postives = 87/129 (67.44%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFT  GWVQSYGSRCVKPPII+GDVSRP+AMTV WS+ AQS+T RPMKGMLTGPVTIL WSFVRND P                            R   C QIALA+ DEV DLEKAGI VIQ+
Sbjct:  500 LSGFAFTQYGWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQSLTKRPMKGMLTGPVTILQWSFVRNDIP----------------------------RSTVCKQIALALNDEVLDLEKAGIKVIQI 600
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_NEIMB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria meningitidis serogroup B GN=metE PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.892e-37
Identity = 81/129 (62.79%), Postives = 87/129 (67.44%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFT  GWVQSYGSRCVKPPII+GDVSRP+AMTV WS+ AQS+T RPMKGMLTGPVTIL WSFVRND P                            R   C QIALA+ DEV DLEKAGI VIQ+
Sbjct:  500 LSGFAFTQYGWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQSLTKRPMKGMLTGPVTILQWSFVRNDIP----------------------------RSTVCKQIALALNDEVLDLEKAGIKVIQI 600
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_NEIMA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria meningitidis serogroup A GN=metE PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.892e-37
Identity = 81/129 (62.79%), Postives = 87/129 (67.44%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFT  GWVQSYGSRCVKPPII+GDVSRP+AMTV WS+ AQS+T RPMKGMLTGPVTIL WSFVRND P                            R   C QIALA+ DEV DLEKAGI VIQ+
Sbjct:  500 LSGFAFTQYGWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQSLTKRPMKGMLTGPVTILQWSFVRNDIP----------------------------RSTVCKQIALALNDEVLDLEKAGIKVIQI 600
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_HAHCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Hahella chejuensis (strain KCTC 2396) GN=metE PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.321e-37
Identity = 74/129 (57.36%), Postives = 89/129 (68.99%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+ F+  GWVQSYGSRCVKPPII+GD+SRP+AMTV W   AQS+T RPMKGMLTGPVTILNWSFVR+DQPR +                            TCYQ+ALAI+ EV+DLE+AG+ +IQ+
Sbjct:  502 LDGYVFSQFGWVQSYGSRCVKPPIIFGDISRPQAMTVEWIKYAQSLTDRPMKGMLTGPVTILNWSFVRDDQPRAL----------------------------TCYQLALAIRAEVQDLERAGVRIIQI 602

HSP 2 Score: 25.409 bits (54), Expect = 9.321e-37
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  602 IDEAALREGLP 612
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_NEIM0 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria meningitidis serogroup C (strain 053442) GN=metE PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.031e-36
Identity = 81/129 (62.79%), Postives = 87/129 (67.44%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFT  GWVQSYGSRCVKPPII+GDVSRP+AMTV WS+ AQS+T RPMKGMLTGPVTIL WSFVRND P                            R   C QIALA+ DEV DLEKAGI VIQ+
Sbjct:  500 LSGFAFTQYGWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQSLTKRPMKGMLTGPVTILQWSFVRNDIP----------------------------RATVCKQIALALNDEVLDLEKAGIKVIQI 600
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BORPD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=metE PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 76/129 (58.91%), Postives = 90/129 (69.77%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L+GFAFT NGWVQSYGSRCVKPPII+GDV+RP  MTV WSS AQS+T +P+KGMLTGPVTIL WSFVR+DQP                            R +TC Q+ALA++DEV DLE+AG+ VIQ+
Sbjct:  509 LAGFAFTRNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSSYAQSLTDKPVKGMLTGPVTILQWSFVRDDQP----------------------------REQTCRQLALALRDEVVDLEQAGVRVIQI 609
The following BLAST results are available for this feature:
BLAST of CX290254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_BURCJ3.237e-3758.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURVG4.216e-3757.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ALHEH5.492e-3761.245-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_FLAJ16.042e-3760.475-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIMF7.892e-3762.795-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIMB7.892e-3762.795-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIMA7.892e-3762.795-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAHCH9.321e-3757.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIM01.031e-3662.795-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORPD1.758e-3658.915-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC02022B12SK IF1 Citrus clementina cDNA clone C02022B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290254 ID=CX290254; Name=CX290254; organism=Citrus clementina; type=EST; length=418bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCC
AATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TCAGAAATGACCAGCCCAGGTATATAAATGAGAACTGGTTCACTATTGAT
TAACCTTTTGAAATGGAAACATTGTTCAACATAAATTGCTGCCAATTTTG
CAGACATGAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGAAGTCG
AGGATCTTGAGAAGGCAGGCATTAACGTTATTCAATTGATGAGGCTGCCT
TGAGGGAAGGATTGCCTC
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