CX290254

Overview
NameCX290254
Unique NameCX290254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_DESVH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=metE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.480e-30
Identity = 68/129 (52.71%), Postives = 85/129 (65.89%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF  T++GWVQSYG+RCVKPP++YGDVSRP+ MTV WS+ A+S+TARPMK MLTGPVTI  WSFVR+D  R               ET+               Q+ALA++DEV DLE AG+ V+Q+
Sbjct:  527 LQGFCITSDGWVQSYGTRCVKPPLLYGDVSRPEPMTVAWSAYARSLTARPMKAMLTGPVTIACWSFVRDDISR---------------ETVLR-------------QLALALRDEVADLESAGLAVVQV 627

HSP 2 Score: 23.0978 bits (48), Expect = 2.480e-30
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            +DE ALREGLP
Sbjct:  627 VDEPALREGLP 637
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_CITK8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=metE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.231e-30
Identity = 69/129 (53.49%), Postives = 82/129 (63.57%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPP++ GDVSRP+ +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPVVIGDVSRPEPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 3.231e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_LACLS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=metE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.194e-30
Identity = 65/129 (50.39%), Postives = 83/129 (64.34%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+ FT   WVQSYG+RCVKPPI++GD++RP+AMTV WS+ AQS T++P+KGMLTGPVTILNWSF R D                                E+  Q+ALA+++EV DLEKAGI +IQ+
Sbjct:  495 LDGYIFTQKAWVQSYGTRCVKPPIVWGDITRPQAMTVRWSAYAQSQTSKPVKGMLTGPVTILNWSFPRED----------------------------ISLKESTLQLALAVQEEVLDLEKAGIKIIQI 595
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BACCN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=metE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.194e-30
Identity = 69/129 (53.49%), Postives = 83/129 (64.34%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L+GF+FT NGWVQSYGSRCVKPPII+GDV+    MTV  +  AQS+T + +KGMLTGPVTILNWSFVRND P                            R E CYQIALA++ E+E LE +GI +IQ+
Sbjct:  502 LAGFSFTKNGWVQSYGSRCVKPPIIFGDVAFISDMTVKETVYAQSLTNKVVKGMLTGPVTILNWSFVRNDLP----------------------------RKEVCYQIALALRHEIERLESSGIRIIQV 602
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_SHISS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella sonnei (strain Ss046) GN=metE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.207e-30
Identity = 70/129 (54.26%), Postives = 81/129 (62.79%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GDVSRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 4.207e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_SHIDS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=metE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.207e-30
Identity = 70/129 (54.26%), Postives = 81/129 (62.79%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GDVSRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 4.207e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_SHIBS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=metE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.207e-30
Identity = 70/129 (54.26%), Postives = 81/129 (62.79%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GDVSRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 4.207e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_SHIB3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=metE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.207e-30
Identity = 70/129 (54.26%), Postives = 81/129 (62.79%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GDVSRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 4.207e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ESCF3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=metE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.207e-30
Identity = 70/129 (54.26%), Postives = 81/129 (62.79%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GDVSRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 4.207e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ECOUT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=metE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.207e-30
Identity = 70/129 (54.26%), Postives = 81/129 (62.79%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GDVSRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 4.207e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608
The following BLAST results are available for this feature:
BLAST of CX290254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_DESVH2.480e-3052.715-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CITK83.231e-3053.495-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LACLS4.194e-3050.395-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACCN4.194e-3053.495-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHISS4.207e-3054.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHIDS4.207e-3054.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHIBS4.207e-3054.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHIB34.207e-3054.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ESCF34.207e-3054.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECOUT4.207e-3054.265-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC02022B12SK IF1 Citrus clementina cDNA clone C02022B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290254 ID=CX290254; Name=CX290254; organism=Citrus clementina; type=EST; length=418bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCC
AATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TCAGAAATGACCAGCCCAGGTATATAAATGAGAACTGGTTCACTATTGAT
TAACCTTTTGAAATGGAAACATTGTTCAACATAAATTGCTGCCAATTTTG
CAGACATGAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGAAGTCG
AGGATCTTGAGAAGGCAGGCATTAACGTTATTCAATTGATGAGGCTGCCT
TGAGGGAAGGATTGCCTC
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