CX290254 | Citrus Genome Database

Overview


Name	CX290254
Unique Name	CX290254
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	418

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_PROMH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Proteus mirabilis (strain HI4320) GN=metE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.477e-30
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 2

Query:    8 GFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            G+ FT NGWVQSYGSRCVKPP+I GD+SRP  +TV W++ AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV+DL+KAGI +IQ+
Sbjct:  503 GYVFTQNGWVQSYGSRCVKPPVIIGDISRPAPITVDWATYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVDDLQKAGIGIIQI 601

HSP 2 Score: 23.483 bits (49), Expect = 5.477e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  601 IDEPALREGLP 611

BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_SHIFL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella flexneri GN=metE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.477e-30
Identity = 69/129 (53.49%), Postives = 81/129 (62.79%), Query Frame = 2

Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 5.477e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608

BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_SHIF8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=metE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.477e-30
Identity = 69/129 (53.49%), Postives = 81/129 (62.79%), Query Frame = 2

Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 5.477e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608

BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ECOLI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli (strain K12) GN=metE PE=1 SV=6)

HSP 1 Score: 128.642 bits (322), Expect = 5.477e-30
Identity = 69/129 (53.49%), Postives = 81/129 (62.79%), Query Frame = 2

Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 5.477e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608

BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ECOHS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=metE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.477e-30
Identity = 69/129 (53.49%), Postives = 81/129 (62.79%), Query Frame = 2

Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 5.477e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608

BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ECODH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=metE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.477e-30
Identity = 69/129 (53.49%), Postives = 81/129 (62.79%), Query Frame = 2

Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 5.477e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608

BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ECO8A (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O8 (strain IAI1) GN=metE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.477e-30
Identity = 69/129 (53.49%), Postives = 81/129 (62.79%), Query Frame = 2

Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 5.477e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608

BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ECO24 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=metE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.477e-30
Identity = 69/129 (53.49%), Postives = 81/129 (62.79%), Query Frame = 2

Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPPI+ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 5.477e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608

BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_SALTY (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella typhimurium GN=metE PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 7.132e-30
Identity = 68/129 (52.71%), Postives = 81/129 (62.79%), Query Frame = 2

Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPP++ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPVVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVTR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 7.132e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608

BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_SALTI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella typhi GN=metE PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 7.132e-30
Identity = 68/129 (52.71%), Postives = 81/129 (62.79%), Query Frame = 2

Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPP++ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEV DLE AGI +IQ+
Sbjct:  498 LDGFVFTQNGWVQSYGSRCVKPPVVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVTR---------------ETI-------------AKQIALALRDEVADLEAAGIGIIQI 598

HSP 2 Score: 23.483 bits (49), Expect = 7.132e-30
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1

Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  598 IDEPALREGLP 608

The following BLAST results are available for this feature:

BLAST of CX290254 vs. ExPASy Swiss-Prot

BLAST of CX290254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269


Match Name	E-value	Identity	Description
METE_PROMH	5.477e-30	52.76	5-methyltetrahydropteroyltriglutamate--homocystein...	[more]
METE_SHIFL	5.477e-30	53.49	5-methyltetrahydropteroyltriglutamate--homocystein...	[more]
METE_SHIF8	5.477e-30	53.49	5-methyltetrahydropteroyltriglutamate--homocystein...	[more]
METE_ECOLI	5.477e-30	53.49	5-methyltetrahydropteroyltriglutamate--homocystein...	[more]
METE_ECOHS	5.477e-30	53.49	5-methyltetrahydropteroyltriglutamate--homocystein...	[more]
METE_ECODH	5.477e-30	53.49	5-methyltetrahydropteroyltriglutamate--homocystein...	[more]
METE_ECO8A	5.477e-30	53.49	5-methyltetrahydropteroyltriglutamate--homocystein...	[more]
METE_ECO24	5.477e-30	53.49	5-methyltetrahydropteroyltriglutamate--homocystein...	[more]
METE_SALTY	7.132e-30	52.71	5-methyltetrahydropteroyltriglutamate--homocystein...	[more]
METE_SALTI	7.132e-30	52.71	5-methyltetrahydropteroyltriglutamate--homocystein...	[more]

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Properties


Property Name	Value
Genbank description	C02022B12SK IF1 Citrus clementina cDNA clone C02022B12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX290254 ID=CX290254; Name=CX290254; organism=Citrus clementina; type=EST; length=418bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCC
AATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TCAGAAATGACCAGCCCAGGTATATAAATGAGAACTGGTTCACTATTGAT
TAACCTTTTGAAATGGAAACATTGTTCAACATAAATTGCTGCCAATTTTG
CAGACATGAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGAAGTCG
AGGATCTTGAGAAGGCAGGCATTAACGTTATTCAATTGATGAGGCTGCCT
TGAGGGAAGGATTGCCTC