CX290254

Overview
NameCX290254
Unique NameCX290254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BORA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella avium (strain 197N) GN=metE PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 77/129 (59.69%), Postives = 89/129 (68.99%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L+GFAFT NGWVQSYGSRCVKPPII+GDV+RP  MTV WSS AQS+T +P+KGMLTGPVTIL WSFVR+DQP                            R  TC Q+ALA++DEV DLEKAG+ VIQ+
Sbjct:  509 LAGFAFTKNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSSYAQSLTDKPVKGMLTGPVTILQWSFVRDDQP----------------------------REATCRQLALALRDEVLDLEKAGVKVIQI 609
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_NEIG1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=metE PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 80/129 (62.02%), Postives = 87/129 (67.44%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFT  GWVQSYGSRCVKPPII+GDVSRP+AMTV WS+ AQ++T RPMKGMLTGPVTIL WSFVRND P                            R   C QIALA+ DEV DLEKAGI VIQ+
Sbjct:  500 LSGFAFTQYGWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQNLTKRPMKGMLTGPVTILQWSFVRNDIP----------------------------RATVCKQIALALNDEVLDLEKAGIKVIQI 600
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ALCBS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=metE PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.684e-36
Identity = 77/129 (59.69%), Postives = 89/129 (68.99%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFAFT  GWVQSYGSRCVKPPII+GDV RP+AMTV W+  AQS+T +P+KGMLTGPVTIL WSFVR+DQP                            R +TC QIALA++DEV+DLEKAGI VIQ+
Sbjct:  507 LDGFAFTRFGWVQSYGSRCVKPPIIFGDVQRPQAMTVEWARYAQSLTHKPVKGMLTGPVTILQWSFVRDDQP----------------------------RADTCRQIALALRDEVQDLEKAGIKVIQI 607

HSP 2 Score: 23.483 bits (49), Expect = 2.684e-36
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  607 IDEPALREGLP 617
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_MARAV (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=metE PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.496e-36
Identity = 72/129 (55.81%), Postives = 90/129 (69.77%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AFT  GWVQSYGSRCVKPPI++GD+ RP+AMTV W   AQS+T +P+KGMLTGPVTILNWSFVR+DQP                            R ++C Q+ALAI++EV+DLEKAG+N+IQ+
Sbjct:  502 LDGYAFTRFGWVQSYGSRCVKPPILFGDIRRPQAMTVEWIRYAQSLTDKPVKGMLTGPVTILNWSFVRDDQP----------------------------RKDSCLQLALAIREEVQDLEKAGVNIIQI 602

HSP 2 Score: 25.409 bits (54), Expect = 3.496e-36
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  602 IDEAALREGLP 612
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_PARL1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=metE PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 4.554e-36
Identity = 78/129 (60.47%), Postives = 88/129 (68.22%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFAFT+ GWVQSYGSRCVKPPII+GDVSRP+ MTV WS  AQS+T RP+KGMLTGPVTIL WSFVR+DQP                            R ETC QIALAI+DEV DLE AG+ +IQ+
Sbjct:  505 LEGFAFTSLGWVQSYGSRCVKPPIIFGDVSRPEPMTVEWSRYAQSLTDRPVKGMLTGPVTILQWSFVRDDQP----------------------------RSETCRQIALAIRDEVYDLEAAGLGMIQI 605

HSP 2 Score: 23.483 bits (49), Expect = 4.554e-36
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  605 IDEPALREGLP 615
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_NITWN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=metE PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.726e-36
Identity = 74/129 (57.36%), Postives = 88/129 (68.22%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFT +GWVQSYGSRCV+PP+++GDVSRP+ MTV W   AQS+TA+PMKGMLTGPVTILNWSFVR+D PR +                             C QIALAI+DEV DLE+AG  +IQ+
Sbjct:  518 LSGFAFTRHGWVQSYGSRCVRPPVLFGDVSRPRPMTVGWWKYAQSLTAKPMKGMLTGPVTILNWSFVRDDVPRSL----------------------------ACRQIALAIRDEVSDLEQAGATMIQI 618

HSP 2 Score: 25.409 bits (54), Expect = 7.726e-36
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  618 IDEAALREGLP 628
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_RHOPT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.006e-35
Identity = 76/129 (58.91%), Postives = 85/129 (65.89%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFT  GWVQSYGSRCV+PPI++GDVSRPK MTV W   AQS+T RPMKGMLTGPVTILNWSFVR+D P                            R   C QIALAI+DEV DLE+AG  +IQ+
Sbjct:  530 LSGFAFTKEGWVQSYGSRCVRPPILFGDVSRPKPMTVGWWKYAQSLTGRPMKGMLTGPVTILNWSFVRDDVP----------------------------RSTACLQIALAIRDEVGDLEQAGATMIQI 630

HSP 2 Score: 25.409 bits (54), Expect = 1.006e-35
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  630 IDEAALREGLP 640
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_RHOPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris GN=metE PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.006e-35
Identity = 76/129 (58.91%), Postives = 85/129 (65.89%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSGFAFT  GWVQSYGSRCV+PPI++GDVSRPK MTV W   AQS+T RPMKGMLTGPVTILNWSFVR+D P                            R   C QIALAI+DEV DLE+AG  +IQ+
Sbjct:  530 LSGFAFTKEGWVQSYGSRCVRPPILFGDVSRPKPMTVGWWKYAQSLTGRPMKGMLTGPVTILNWSFVRDDVP----------------------------RSTACLQIALAIRDEVGDLEQAGATMIQI 630

HSP 2 Score: 25.409 bits (54), Expect = 1.006e-35
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  630 IDEAALREGLP 640
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BORPE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella pertussis GN=metE PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.140e-35
Identity = 76/129 (58.91%), Postives = 88/129 (68.22%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L+GFAFT NGWVQSYGSRCVKPPII+GDV+RP  MTV WS+ AQS+T +P+KGMLTGPVTIL WSFVR+DQP                            R  TC Q+ALA++DEV DLE AGI VIQ+
Sbjct:  509 LAGFAFTKNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSAYAQSLTDKPVKGMLTGPVTILQWSFVRDDQP----------------------------REATCRQLALALRDEVVDLEAAGIRVIQI 609
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BORPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella parapertussis GN=metE PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.140e-35
Identity = 76/129 (58.91%), Postives = 88/129 (68.22%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L+GFAFT NGWVQSYGSRCVKPPII+GDV+RP  MTV WS+ AQS+T +P+KGMLTGPVTIL WSFVR+DQP                            R  TC Q+ALA++DEV DLE AGI VIQ+
Sbjct:  509 LAGFAFTKNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSAYAQSLTDKPVKGMLTGPVTILQWSFVRDDQP----------------------------REATCRQLALALRDEVVDLEAAGIRVIQI 609
The following BLAST results are available for this feature:
BLAST of CX290254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_BORA11.758e-3659.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NEIG12.296e-3662.025-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ALCBS2.684e-3659.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MARAV3.496e-3655.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PARL14.554e-3660.475-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITWN7.726e-3657.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOPT1.006e-3558.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOPA1.006e-3558.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORPE1.140e-3558.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BORPA1.140e-3558.915-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC02022B12SK IF1 Citrus clementina cDNA clone C02022B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290254 ID=CX290254; Name=CX290254; organism=Citrus clementina; type=EST; length=418bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCC
AATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TCAGAAATGACCAGCCCAGGTATATAAATGAGAACTGGTTCACTATTGAT
TAACCTTTTGAAATGGAAACATTGTTCAACATAAATTGCTGCCAATTTTG
CAGACATGAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGAAGTCG
AGGATCTTGAGAAGGCAGGCATTAACGTTATTCAATTGATGAGGCTGCCT
TGAGGGAAGGATTGCCTC
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