CX290254

Overview
NameCX290254
Unique NameCX290254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BORBR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bordetella bronchiseptica GN=metE PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.140e-35
Identity = 76/129 (58.91%), Postives = 88/129 (68.22%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L+GFAFT NGWVQSYGSRCVKPPII+GDV+RP  MTV WS+ AQS+T +P+KGMLTGPVTIL WSFVR+DQP                            R  TC Q+ALA++DEV DLE AGI VIQ+
Sbjct:  509 LAGFAFTKNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSAYAQSLTDKPVKGMLTGPVTILQWSFVRDDQP----------------------------REATCRQLALALRDEVVDLEAAGIRVIQI 609          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURP8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=metE PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.311e-35
Identity = 73/129 (56.59%), Postives = 88/129 (68.22%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+ F+  GWVQSYGSRCVKPPI++GD+SRPKAMTV W   AQ+ TA+PMKGMLTGPVTILNWSFVR+DQPR +                            +C Q+ALAI++EV DLEKAG+ VIQ+
Sbjct:  507 LDGYVFSQFGWVQSYGSRCVKPPILFGDISRPKAMTVEWICYAQAQTAKPMKGMLTGPVTILNWSFVRDDQPRSV----------------------------SCRQLALAIREEVLDLEKAGVRVIQI 607          

HSP 2 Score: 25.409 bits (54), Expect = 1.311e-35
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  607 IDEAALREGLP 617          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_PSYIN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Psychromonas ingrahamii (strain 37) GN=metE PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35
Identity = 78/129 (60.47%), Postives = 90/129 (69.77%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT   WVQSYGSRCVKPPI++GDVSRPKAMTV WSS AQS+T + +KGMLTGPVTILNWSFVR+DQP               ++T             TC QIALAI++EV DLEKAGIN+IQ+
Sbjct:  512 LDGFVFTQFAWVQSYGSRCVKPPILFGDVSRPKAMTVEWSSYAQSLTEKKVKGMLTGPVTILNWSFVRDDQP---------------LQT-------------TCMQIALAIREEVLDLEKAGINIIQI 612          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_CHRVO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chromobacterium violaceum GN=metE PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35
Identity = 77/129 (59.69%), Postives = 87/129 (67.44%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L+GFAFTA GWVQSYGSRCVKPPII+GDV+RPK MTV W+  AQS+TA+P+KGMLTGPVTIL WSFVR+D P                            R E C QIALA+ DEV DLE AGI VIQ+
Sbjct:  500 LAGFAFTAGGWVQSYGSRCVKPPIIFGDVARPKPMTVDWARYAQSLTAKPVKGMLTGPVTILQWSFVRDDLP----------------------------RREVCRQIALALNDEVLDLEAAGIRVIQI 600          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_RALSO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia solanacearum GN=metE PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 76/129 (58.91%), Postives = 87/129 (67.44%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AFTANGWVQSYGSRCVKPP+IYGDV RP+ MTV WS  AQS+TA+PMKGMLTGPVT+L WSFVR+DQP                            R +T  QIALA++DEV DLE AGI  IQ+
Sbjct:  499 LWGYAFTANGWVQSYGSRCVKPPVIYGDVYRPEPMTVEWSRYAQSLTAKPMKGMLTGPVTMLQWSFVRDDQP----------------------------REQTALQIALALRDEVRDLEAAGIAAIQI 599          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_RALPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia pickettii (strain 12J) GN=metE PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 76/129 (58.91%), Postives = 88/129 (68.22%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AFTANGWVQSYGSRCVKPP+IYGDV RP+AMTV WS  AQS+T++PMKGMLTGPVT+L WSFVR+DQP                            R +T  QIALA++DEV DLE AGI  IQ+
Sbjct:  502 LWGYAFTANGWVQSYGSRCVKPPVIYGDVYRPEAMTVEWSKYAQSLTSKPMKGMLTGPVTMLQWSFVRDDQP----------------------------REQTALQIALALRDEVCDLEAAGIAAIQI 602          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_CHRSD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metE PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 6.402e-35
Identity = 75/129 (58.14%), Postives = 85/129 (65.89%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFAFT  GWVQSYGSRCVKPP+I+GDVSRP  MTV WS  AQS+T +PMKGMLTGPVTIL WSFVR+DQP                            R  TC QIAL+++DEV DLE AGI +IQ+
Sbjct:  504 LDGFAFTRFGWVQSYGSRCVKPPVIFGDVSRPGPMTVRWSEYAQSLTDKPMKGMLTGPVTILQWSFVRDDQP----------------------------RDATCRQIALSLRDEVADLEAAGIKIIQI 604          

HSP 2 Score: 23.483 bits (49), Expect = 6.402e-35
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  604 IDEPALREGLP 614          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_XYLFT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=metE PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 76/129 (58.91%), Postives = 86/129 (66.67%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT  GWVQSYGSRCVKPPIIYGDV RP  MTV WS+ AQS+T +PMKGMLTGPVT+L WSFVR+DQ                             R +TC QIALA++DEV+DLEKAGI VIQ+
Sbjct:  503 LDGFIFTKLGWVQSYGSRCVKPPIIYGDVVRPAPMTVTWSAYAQSLTDKPMKGMLTGPVTMLQWSFVRDDQE----------------------------RAQTCRQIALALRDEVQDLEKAGIKVIQI 603          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_XYLFM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa (strain M12) GN=metE PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 76/129 (58.91%), Postives = 86/129 (66.67%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT  GWVQSYGSRCVKPPIIYGDV RP  MTV WS+ AQS+T +PMKGMLTGPVT+L WSFVR+DQ                             R +TC QIALA++DEV+DLEKAGI VIQ+
Sbjct:  503 LDGFIFTKLGWVQSYGSRCVKPPIIYGDVVRPAPMTVTWSAYAQSLTDKPMKGMLTGPVTMLQWSFVRDDQE----------------------------RAQTCRQIALALRDEVQDLEKAGIKVIQI 603          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_XYLFA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Xylella fastidiosa GN=metE PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 76/129 (58.91%), Postives = 86/129 (66.67%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT  GWVQSYGSRCVKPPIIYGDV RP  MTV WS+ AQS+T +PMKGMLTGPVT+L WSFVR+DQ                             R +TC QIALA++DEV+DLEKAGI VIQ+
Sbjct:  503 LDGFIFTKLGWVQSYGSRCVKPPIIYGDVVRPAPMTVTWSAYAQSLTDKPMKGMLTGPVTMLQWSFVRDDQE----------------------------RAQTCRQIALALRDEVQDLEKAGIKVIQI 603          
The following BLAST results are available for this feature:
BLAST of CX290254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_BORBR1.140e-3558.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP81.311e-3556.595-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSYIN1.488e-3560.475-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHRVO1.488e-3559.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALSO1.944e-3558.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALPJ2.539e-3558.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHRSD6.402e-3558.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_XYLFT7.386e-3558.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_XYLFM7.386e-3558.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_XYLFA7.386e-3558.915-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC02022B12SK IF1 Citrus clementina cDNA clone C02022B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290254 ID=CX290254; Name=CX290254; organism=Citrus clementina; type=EST; length=418bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCC
AATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TCAGAAATGACCAGCCCAGGTATATAAATGAGAACTGGTTCACTATTGAT
TAACCTTTTGAAATGGAAACATTGTTCAACATAAATTGCTGCCAATTTTG
CAGACATGAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGAAGTCG
AGGATCTTGAGAAGGCAGGCATTAACGTTATTCAATTGATGAGGCTGCCT
TGAGGGAAGGATTGCCTC
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