CX290254

Overview
NameCX290254
Unique NameCX290254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_CAUCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Caulobacter crescentus GN=metE PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.986e-33
Identity = 72/129 (55.81%), Postives = 82/129 (63.57%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L+GFAFT +GWVQSYGSRCV+PPI++GDVSRP  MTV W   AQ +T RPMKGMLTGPVTILNWSFVR+D P                            R   C QIALAI+DEV DLE  G  +IQ+
Sbjct:  522 LAGFAFTQSGWVQSYGSRCVRPPILFGDVSRPAPMTVDWWRYAQGLTRRPMKGMLTGPVTILNWSFVRDDLP----------------------------RETACRQIALAIRDEVVDLEATGAAIIQI 622          

HSP 2 Score: 25.409 bits (54), Expect = 1.986e-33
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDEAALREGLP
Sbjct:  622 IDEAALREGLP 632          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_MESSB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=metE PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.986e-33
Identity = 73/129 (56.59%), Postives = 88/129 (68.22%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            LSG+AFT  GWVQSYGSRCV+PPII+GDVSRP+ MTV W++ AQS+T +P+KGMLTGPVT+L WSFVR+D PR               ET+             C QIA A++DEV DLE AGI VIQ+
Sbjct:  514 LSGYAFTKQGWVQSYGSRCVRPPIIFGDVSRPQPMTVDWATYAQSLTDKPVKGMLTGPVTMLQWSFVRDDLPR---------------ETV-------------CRQIAFALRDEVSDLEAAGIGVIQI 614          

HSP 2 Score: 23.483 bits (49), Expect = 1.986e-33
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  614 IDEPALREGLP 624          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_NITEU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrosomonas europaea GN=metE PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.103e-33
Identity = 73/129 (56.59%), Postives = 84/129 (65.12%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L G+AFT NGWVQSYGSRCVKPPI+YGDV RP+AMTV W   AQS T +P+KGMLTGPVT+L WSFVR+DQP                            R  T  Q+ALAI+DEV DLE AGI +IQ+
Sbjct:  500 LWGYAFTENGWVQSYGSRCVKPPILYGDVYRPEAMTVEWIKYAQSQTGKPVKGMLTGPVTMLMWSFVRDDQP----------------------------RSTTALQLALAIRDEVADLENAGIGMIQI 600          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ACTPJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=metE PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.053e-33
Identity = 74/129 (57.36%), Postives = 82/129 (63.57%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFAFT  GWVQSYGSRCVKPP+IYGDV+RP+ MTV WS  AQS+T + MKGMLTGPVTIL WSFVRND P                            R   C QI +A+ DEV DLEKAGI VIQ+
Sbjct:  499 LDGFAFTKFGWVQSYGSRCVKPPVIYGDVTRPEPMTVRWSQYAQSLTDKVMKGMLTGPVTILQWSFVRNDIP----------------------------RSTVCKQIGVALSDEVLDLEKAGIKVIQI 599          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ACTP7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=metE PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.053e-33
Identity = 74/129 (57.36%), Postives = 82/129 (63.57%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFAFT  GWVQSYGSRCVKPP+IYGDV+RP+ MTV WS  AQS+T + MKGMLTGPVTIL WSFVRND P                            R   C QI +A+ DEV DLEKAGI VIQ+
Sbjct:  499 LDGFAFTKFGWVQSYGSRCVKPPVIYGDVTRPEPMTVRWSQYAQSLTDKVMKGMLTGPVTILQWSFVRNDIP----------------------------RSTVCKQIGVALSDEVLDLEKAGIKVIQI 599          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ACTP2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=metE PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.053e-33
Identity = 74/129 (57.36%), Postives = 82/129 (63.57%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFAFT  GWVQSYGSRCVKPP+IYGDV+RP+ MTV WS  AQS+T + MKGMLTGPVTIL WSFVRND P                            R   C QI +A+ DEV DLEKAGI VIQ+
Sbjct:  499 LDGFAFTKFGWVQSYGSRCVKPPVIYGDVTRPEPMTVRWSQYAQSLTDKVMKGMLTGPVTILQWSFVRNDIP----------------------------RSTVCKQIGVALSDEVLDLEKAGIKVIQI 599          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_METCA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Methylococcus capsulatus GN=metE PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.293e-33
Identity = 71/129 (55.04%), Postives = 85/129 (65.89%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L+G+AFT +GWVQSYGSRCVKPPIIYGDV+RP+ MTV W   AQS+T +P+KGMLTGPVT+L WSF R+DQPR +                            T  QIALAI+DEV DLE AG+  IQ+
Sbjct:  499 LAGYAFTKHGWVQSYGSRCVKPPIIYGDVARPEPMTVEWIGYAQSLTKKPVKGMLTGPVTMLQWSFARDDQPRAV----------------------------TALQIALAIRDEVADLEAAGVAAIQI 599          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_HAES2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Haemophilus somnus (strain 2336) GN=metE PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.913e-33
Identity = 74/129 (57.36%), Postives = 81/129 (62.79%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFAFT  GWVQSYGSRCVKPP+IYGDV RP+ MTV WS  AQS+T + MKGMLTGPVTIL WSFVRND P                            R   C QI +A+ DEV DLEKAGI VIQ+
Sbjct:  500 LDGFAFTKFGWVQSYGSRCVKPPVIYGDVVRPEPMTVRWSKYAQSLTKKVMKGMLTGPVTILQWSFVRNDIP----------------------------RSTVCKQIGVALSDEVLDLEKAGIKVIQI 600          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_PASMU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pasteurella multocida GN=metE PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.029e-33
Identity = 74/129 (57.36%), Postives = 81/129 (62.79%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFAFT  GWVQSYGSRCVKPP+IYGDV RP+ MTV WS  AQS+T + MKGMLTGPVTIL WSFVRND P                            R   C QI +A+ DEV DLEKAGI VIQ+
Sbjct:  500 LDGFAFTKFGWVQSYGSRCVKPPVIYGDVVRPEPMTVRWSQYAQSLTNKVMKGMLTGPVTILQWSFVRNDIP----------------------------RSTVCKQIGVALSDEVLDLEKAGIKVIQI 600          
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_HAEIN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Haemophilus influenzae GN=metE PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.029e-33
Identity = 74/129 (57.36%), Postives = 81/129 (62.79%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFAFT  GWVQSYGSRCVKPP+IYGDV+RP+ MTV WS  AQS+T R MKGMLTGPVTIL WSFVRND P                            R   C QI +A+ DEV DLE AGI VIQ+
Sbjct:  499 LDGFAFTKFGWVQSYGSRCVKPPVIYGDVTRPEPMTVRWSQYAQSLTNRVMKGMLTGPVTILQWSFVRNDIP----------------------------RSTVCKQIGVALSDEVLDLEAAGIKVIQI 599          
The following BLAST results are available for this feature:
BLAST of CX290254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_CAUCR1.986e-3355.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESSB1.986e-3356.595-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITEU3.103e-3356.595-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACTPJ4.053e-3357.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACTP74.053e-3357.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACTP24.053e-3357.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_METCA5.293e-3355.045-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAES26.913e-3357.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PASMU9.029e-3357.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HAEIN9.029e-3357.365-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC02022B12SK IF1 Citrus clementina cDNA clone C02022B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290254 ID=CX290254; Name=CX290254; organism=Citrus clementina; type=EST; length=418bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCC
AATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TCAGAAATGACCAGCCCAGGTATATAAATGAGAACTGGTTCACTATTGAT
TAACCTTTTGAAATGGAAACATTGTTCAACATAAATTGCTGCCAATTTTG
CAGACATGAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGAAGTCG
AGGATCTTGAGAAGGCAGGCATTAACGTTATTCAATTGATGAGGCTGCCT
TGAGGGAAGGATTGCCTC
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