CX290254

Overview
NameCX290254
Unique NameCX290254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURMA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei GN=metE PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.630e-32
Identity = 70/129 (54.26%), Postives = 85/129 (65.89%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFA T+NGWVQSYGSRCVKPP++YGDV  P+ MTV W+S AQS++A+P+KGMLTGPVT+L WSFVR+DQP                            R  T  QIALA++ E  DLEKAGI +IQ+
Sbjct:  502 LWGFAITSNGWVQSYGSRCVKPPLVYGDVYLPEPMTVGWASYAQSLSAKPVKGMLTGPVTMLQWSFVRDDQP----------------------------RATTALQIALALRQETLDLEKAGIGMIQI 602

HSP 2 Score: 23.483 bits (49), Expect = 3.630e-32
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  602 IDEPALREGLP 612
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURM9 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=metE PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.630e-32
Identity = 70/129 (54.26%), Postives = 85/129 (65.89%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFA T+NGWVQSYGSRCVKPP++YGDV  P+ MTV W+S AQS++A+P+KGMLTGPVT+L WSFVR+DQP                            R  T  QIALA++ E  DLEKAGI +IQ+
Sbjct:  502 LWGFAITSNGWVQSYGSRCVKPPLVYGDVYLPEPMTVGWASYAQSLSAKPVKGMLTGPVTMLQWSFVRDDQP----------------------------RATTALQIALALRQETLDLEKAGIGMIQI 602

HSP 2 Score: 23.483 bits (49), Expect = 3.630e-32
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  602 IDEPALREGLP 612
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_BURM7 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=metE PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.630e-32
Identity = 70/129 (54.26%), Postives = 85/129 (65.89%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GFA T+NGWVQSYGSRCVKPP++YGDV  P+ MTV W+S AQS++A+P+KGMLTGPVT+L WSFVR+DQP                            R  T  QIALA++ E  DLEKAGI +IQ+
Sbjct:  502 LWGFAITSNGWVQSYGSRCVKPPLVYGDVYLPEPMTVGWASYAQSLSAKPVKGMLTGPVTMLQWSFVRDDQP----------------------------RATTALQIALALRQETLDLEKAGIGMIQI 602

HSP 2 Score: 23.483 bits (49), Expect = 3.630e-32
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  602 IDEPALREGLP 612
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_YERE8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=metE PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.631e-32
Identity = 72/129 (55.81%), Postives = 85/129 (65.89%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPP+I GD+SRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEVEDLEKAGI +IQ+
Sbjct:  501 LDGFVFTQNGWVQSYGSRCVKPPVIIGDISRPEAITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVEDLEKAGIGIIQI 601

HSP 2 Score: 23.483 bits (49), Expect = 3.631e-32
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  601 IDEPALREGLP 611
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_ERWT9 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=metE PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.631e-32
Identity = 73/129 (56.59%), Postives = 85/129 (65.89%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQL 388
            L GF FT NGWVQSYGSRCVKPP+I GDVSRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R               ET+               QIALA++DEVEDLEKAGI +IQ+
Sbjct:  499 LDGFIFTQNGWVQSYGSRCVKPPVIIGDVSRPEAITVNWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSR---------------ETI-------------AKQIALALRDEVEDLEKAGIGIIQI 599

HSP 2 Score: 23.483 bits (49), Expect = 3.631e-32
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  385 IDEAALREGLP 417
            IDE ALREGLP
Sbjct:  599 IDEPALREGLP 609
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_COXBU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Coxiella burnetii GN=metE PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQLMRLP*GKDCL 418
            L G A T+NGWVQSYGSRCVKPPII+GDVSR + MT+ W   AQS+T + +KGMLTGPVTIL WSFVR+DQP                            R +T  QIALA++DEV+DLE++G+ VIQ+   P  ++CL
Sbjct:  502 LDGIAITSNGWVQSYGSRCVKPPIIFGDVSRERPMTLRWIEYAQSLTTKSVKGMLTGPVTILAWSFVRDDQP----------------------------RSQTAKQIALALRDEVQDLERSGVRVIQIDE-PAFRECL 611
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_COXBR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=metE PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQLMRLP*GKDCL 418
            L G A T+NGWVQSYGSRCVKPPII+GDVSR + MT+ W   AQS+T + +KGMLTGPVTIL WSFVR+DQP                            R +T  QIALA++DEV+DLE++G+ VIQ+   P  ++CL
Sbjct:  502 LDGIAITSNGWVQSYGSRCVKPPIIFGDVSRERPMTLRWIEYAQSLTTKSVKGMLTGPVTILAWSFVRDDQP----------------------------RSQTAKQIALALRDEVQDLERSGVRVIQIDE-PAFRECL 611
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_COXBN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=metE PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQLMRLP*GKDCL 418
            L G A T+NGWVQSYGSRCVKPPII+GDVSR + MT+ W   AQS+T + +KGMLTGPVTIL WSFVR+DQP                            R +T  QIALA++DEV+DLE++G+ VIQ+   P  ++CL
Sbjct:  502 LDGIAITSNGWVQSYGSRCVKPPIIFGDVSRERPMTLRWIEYAQSLTTKSVKGMLTGPVTILAWSFVRDDQP----------------------------RSQTAKQIALALRDEVQDLERSGVRVIQIDE-PAFRECL 611
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_COXB2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Coxiella burnetii (strain CbuG_Q212) GN=metE PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQLMRLP*GKDCL 418
            L G A T+NGWVQSYGSRCVKPPII+GDVSR + MT+ W   AQS+T + +KGMLTGPVTIL WSFVR+DQP                            R +T  QIALA++DEV+DLE++G+ VIQ+   P  ++CL
Sbjct:  502 LDGIAITSNGWVQSYGSRCVKPPIIFGDVSRERPMTLRWIEYAQSLTTKSVKGMLTGPVTILAWSFVRDDQP----------------------------RSQTAKQIALALRDEVQDLERSGVRVIQIDE-PAFRECL 611
[Close]
BLAST of CX290254 vs. ExPASy Swiss-Prot
Match: METE_COXB1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=metE PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 2 
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRYINENWFTID*PFEMETLFNINCCQFCRHETCYQIALAIKDEVEDLEKAGINVIQLMRLP*GKDCL 418
            L G A T+NGWVQSYGSRCVKPPII+GDVSR + MT+ W   AQS+T + +KGMLTGPVTIL WSFVR+DQP                            R +T  QIALA++DEV+DLE++G+ VIQ+   P  ++CL
Sbjct:  502 LDGIAITSNGWVQSYGSRCVKPPIIFGDVSRERPMTLRWIEYAQSLTTKSVKGMLTGPVTILAWSFVRDDQP----------------------------RSQTAKQIALALRDEVQDLERSGVRVIQIDE-PAFRECL 611
The following BLAST results are available for this feature:
BLAST of CX290254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_BURMA3.630e-3254.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURM93.630e-3254.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURM73.630e-3254.265-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_YERE83.631e-3255.815-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ERWT93.631e-3256.595-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_COXBU4.481e-3251.805-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_COXBR4.481e-3251.805-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_COXBN4.481e-3251.805-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_COXB24.481e-3251.805-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_COXB14.481e-3251.805-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC02022B12SK IF1 Citrus clementina cDNA clone C02022B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290254 ID=CX290254; Name=CX290254; organism=Citrus clementina; type=EST; length=418bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCC
AATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TCAGAAATGACCAGCCCAGGTATATAAATGAGAACTGGTTCACTATTGAT
TAACCTTTTGAAATGGAAACATTGTTCAACATAAATTGCTGCCAATTTTG
CAGACATGAAACCTGCTACCAGATTGCTTTGGCCATCAAGGACGAAGTCG
AGGATCTTGAGAAGGCAGGCATTAACGTTATTCAATTGATGAGGCTGCCT
TGAGGGAAGGATTGCCTC
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