CX290255

Overview
NameCX290255
Unique NameCX290255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:929..1658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.010e-62
Identity = 105/234 (44.87%), Postives = 153/234 (65.38%), Query Frame = 3
Query:   27 PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIP 728
            PTKYSQ FL Q  A  WKQ+ SYW++P YNA+R+ MTL+  + FG ++W +G+      DL NL GA Y+   FLG +N ++++PV+ VERTV+YRE+AAGM++ + YA AQ                    +MIG++W+  KF  F +FM A+F  FTL+ MM+VA T  + +A +++SF LS WN F+GF++ R  IPVWWRW+YW +PV+W +YG++  Q  D + +V +P
Sbjct: 1168 PTKYSQNFLNQCVANTWKQFQSYWKDPPYNAMRYVMTLLYGLVFGTVFWRRGKNIESVNDLNNLLGATYAAVFFLGAANLLTLLPVVSVERTVFYREKAAGMYSPLSYAFAQGFVEFCYSAVQGVLYTILIYSMIGYEWKADKFFYFLFFMIAAFAYFTLFSMMLVACTASEMLAAVLVSFVLSSWNNFAGFIIPRPLIPVWWRWFYWANPVSWTIYGVIASQFADSDRVVTVP 1401          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.838e-62
Identity = 109/233 (46.78%), Postives = 147/233 (63.09%), Query Frame = 3
Query:   30 TKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIP 728
            ++YSQ  L+QF  C WKQ   YWR+P+YN +R   T + A   G ++WD G K +  QDL  + GA+YS C+FLG SNA SV P++ +ERTV+YRE+AAGM+A +PYA AQ                      IGF+    KF L+  FM+ +F  FT YGMM V LTP Q +A ++ S F S+WNL SGFLV +  IPVWW W+Y++ PVAW L G++  Q+GD+ES++  P
Sbjct: 1143 SRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEP 1375          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.156e-58
Identity = 103/233 (44.21%), Postives = 150/233 (64.38%), Query Frame = 3
Query:   27 PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEI 725
            PT++SQ    QF+ CFWKQYWSYWR+P YN +R    L  ++  GL++WDKG+K   QQ + ++FGAM++  IF G +N+ SV+P +  ER+V YRER AGM+A+  YALAQVA                   MIG+ W   K   +FY M+ + + FT  GMM+V++TP   VA I+ S F +++NLF+GFL+ ++ IP WW W+Y+L+P +W L G++T Q GD+E  + +
Sbjct: 1163 PTRFSQNGWGQFKTCFWKQYWSYWRSPSYNLMRSLHMLFASLVSGLLFWDKGKKLDNQQSVFSVFGAMFTAVIFCGINNSSSVLPYVTTERSVLYRERFAGMYASWAYALAQVAIEIPYLLAQALAFTVITYPMIGYYWSAYKVFWYFYSMFCTLLYFTYLGMMLVSMTPSFPVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGDIEKEITV 1395          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.409e-56
Identity = 105/236 (44.49%), Postives = 148/236 (62.71%), Query Frame = 3
Query:   30 TKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQV---AXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIP 728
            +++SQ  LTQF  C  KQ   YWR+P+YN +R   T V AI FG I+W+ G K    +D+  L GA+Y+ C+FLG +NA SV PV+ VERTVYYRERAA M+++ PYA AQV                       M+ ++  + K  L+  +M+ +F  FT YGM+ V LTP Q +A++V S F S+WNL SGFL+ +S IP WW W+Y++ PVAW L G++T Q+GD+++ +  P
Sbjct: 1155 SEFSQNRLTQFMVCLRKQSLVYWRSPEYNVVRLFFTSVAAIIFGSIFWNVGMKRESTEDILLLMGALYAACLFLGVNNASSVQPVVSVERTVYYRERAANMYSSFPYAAAQVYHGLVEIPYIAVQTLIFGLITYFMVNYERNIRKLVLYLIYMFLTFTYFTFYGMVAVGLTPTQHMASVVSSAFYSLWNLLSGFLIPQSRIPGWWIWFYYICPVAWTLRGVITSQLGDVDTRIVGP 1390          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.757e-52
Identity = 92/231 (39.83%), Postives = 142/231 (61.47%), Query Frame = 3
Query:   30 TKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVE 722
            TKYSQ +L+QF+AC WKQ+ SYWRN  YNA+RF     + I +G+I+W  G++   +QD+ N  GAM ++  FL + +A +V PV+  ERTV+YRE  AGM++A+PYA +QV                    MIG++W   KF L  +F + S +     G+M+++++P Q++A+I+     + WN+FSGF + R  + VW RW+ ++ P  W LYGL   Q GD+E+ ++
Sbjct: 1138 TKYSQSYLSQFQACLWKQHKSYWRNVPYNAVRFSFGAAVGIMYGIIFWSLGKRKGTRQDIFNSVGAMSTVVGFLSSQSAATVRPVVIAERTVFYREAGAGMYSALPYAFSQVIIEIPYTMAQACIYGVIVYGMIGYEWTASKFFLNIFFTFISILYSIYTGIMVISVSPNQEIASILNGVISTSWNVFSGFTIPRPRMHVWLRWFTYVCPGWWGLYGLTIAQYGDVETRLD 1368          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.119e-48
Identity = 86/233 (36.91%), Postives = 139/233 (59.66%), Query Frame = 3
Query:   12 EGSLLPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLE 710
            E  +L ++Y+Q    QF+AC WKQ+ SYWRNP YN  R        +  G+++W K ++ + QQDL N+FG+M+++ +F G +N  +V+  +  ER V+YRER + M+ +  Y+LAQV                    M+G+ W + K    FY ++ + +IF  +GM++V +TP   +A  + S F ++ NLF+G+++ + +IP WW W Y+LSP +W L GL+T Q GD+E
Sbjct: 1103 ERLILSSRYAQTSWEQFKACLWKQHLSYWRNPSYNLTRIIFMSFTCMLCGILFWQKAKEINNQQDLFNVFGSMFTVVLFSGINNCSTVLFSVATERNVFYRERFSRMYNSWAYSLAQVLVEIPYSLFQSIVYVIIVYPMVGYHWSVFKVFWSFYSIFCTLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDME 1335          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.487e-47
Identity = 87/233 (37.34%), Postives = 137/233 (58.80%), Query Frame = 3
Query:   12 EGSLLPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLE 710
            E  +L ++Y+Q    QF+AC WKQ+ SYWRNP YN  R        +  G+++  K ++ + QQDL N+FG+M+++ +F G +N  +VI  +  ER V+YRER + M+    Y+LAQV                    M+G+ W + K    FY ++ S +IF  +GM++V +TP   +A  + S F ++ NLF+G+++ + +IP WW W Y+LSP +W L GL+T Q GD+E
Sbjct: 1101 ERLILSSRYAQTSWEQFKACLWKQHLSYWRNPSYNLTRIIFMCFTCMLCGILFLQKAKEINNQQDLFNVFGSMFTVVLFSGINNCSTVIFCVATERNVFYRERFSRMYNPWAYSLAQVLVEIPYSLFQSIIYVIIVYPMVGYHWSVYKVFWSFYSIFCSLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDME 1333          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.769e-47
Identity = 91/238 (38.24%), Postives = 137/238 (57.56%), Query Frame = 3
Query:   12 EGSLLPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEI 725
            E    P++YSQ    Q +AC WKQ+ SYWRNP +N  R    L+ ++   L++W K +  + QQDL ++FG+MY+I IF G +N  +V+  I  ER V+YRER A M+++  Y+ +QV                    MIG+   + K     Y ++ S +IF   GM++VALTP   +A  + S F S+ NLF+GF++ +  IP WW W Y+LSP +W L GL++ Q GD+E  + +
Sbjct: 1108 EALSFPSRYSQTGWGQLKACLWKQHCSYWRNPSHNLTRIVFILLNSLLCSLLFWQKAKDINNQQDLFSIFGSMYTIVIFSGINNCATVMNFIATERNVFYRERFARMYSSWAYSFSQVLVEVPYSLLQSLLCTIIVYPMIGYHMSVYKMFWSLYSIFCSLLIFNYCGMLMVALTPNIHMALTLRSTFFSMVNLFAGFVMPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVEKEITV 1345          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.325e-46
Identity = 88/233 (37.77%), Postives = 135/233 (57.94%), Query Frame = 3
Query:   12 EGSLLPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLE 710
            E    P+++SQ    Q +AC WKQ++SYWRNP +N  R    L+ +   GL++W K +  + QQDL ++FG+MY++ +F G +N  +VI  I  ER V+YRER A M+++  Y+ +QV                     IG+   + K     Y ++ S +IF   GM++VALTP   +A  + S F S+ NLF+GF++ +  IP WW W Y+LSP +W L GL++ Q GD++
Sbjct: 1111 EALRFPSQFSQTAWVQLKACLWKQHYSYWRNPSHNITRIVFILLDSTLCGLLFWQKAEDINNQQDLISIFGSMYTLVVFPGMNNCAAVINFIAAERNVFYRERFARMYSSWAYSFSQVLIEVPYSLLQSLLCTIIVYPTIGYHMSVYKMFWSLYSIFCSLLIFNYSGMLMVALTPNIHMAVTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVD 1343          
BLAST of CX290255 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.465e-45
Identity = 82/228 (35.96%), Postives = 128/228 (56.14%), Query Frame = 3
Query:   36 YSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLV 719
            ++Q +  QF++C WK   SYWR+P YN +R G T + +  FGL++W++G+K   QQ+L  + GA+Y + +F+G +N  S +     ER V YRER AGM++A  YALAQV                    MIGF     K     Y M+ + + F    M ++++TP   VA I+ S F + +N+F+GFL+ +  IP WW W+Y+++P +W L    + Q GD+   +
Sbjct: 1132 FAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKI 1359          
The following BLAST results are available for this feature:
BLAST of CX290255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PDR5_ORYSJ1.010e-6244.87Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
AB31G_ARATH3.838e-6246.78ABC transporter G family member 31 OS=Arabidopsis ... [more]
PDR3_TOBAC1.156e-5844.21Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
PDR13_ORYSJ2.409e-5644.49Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
AB38G_ARATH2.757e-5239.83ABC transporter G family member 38 OS=Arabidopsis ... [more]
AB42G_ARATH4.119e-4836.91ABC transporter G family member 42 OS=Arabidopsis ... [more]
AB43G_ARATH3.487e-4737.34ABC transporter G family member 43 OS=Arabidopsis ... [more]
AB41G_ARATH7.769e-4738.24ABC transporter G family member 41 OS=Arabidopsis ... [more]
AB30G_ARATH1.325e-4637.77ABC transporter G family member 30 OS=Arabidopsis ... [more]
AB33G_ARATH1.465e-4535.96ABC transporter G family member 33 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC02022C01SK IF1 Citrus clementina cDNA clone C02022C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290255 ID=CX290255; Name=CX290255; organism=Citrus clementina; type=EST; length=730bp
GAATTCGGCACGAGGGATCTCTACTTCCCACCAAATACTCTCAACCATTT
TTAACCCAATTTAGGGCTTGTTTCTGGAAACAGTATTGGTCTTATTGGAG
AAACCCTCAGTACAATGCTATCCGATTTGGCATGACTCTTGTCATTGCCA
TTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGACTTCCAAACAA
CAAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTTGTATTTTCCT
TGGAACCAGCAATGCCATATCCGTGATACCCGTTATCTGCGTTGAGAGAA
CAGTATACTACCGTGAAAGAGCCGCAGGGATGTTTGCTGCAATGCCTTAT
GCACTTGCTCAAGTAGCCGTAGAGATAATATATGTATCAGTTCAAAGTGT
CGTGTATGTTCTTATCCTTTACGCGATGATTGGATTCAAGTGGGAGCTGG
GAAAATTCTGCTTGTTCTTCTACTTCATGTGGGCGTCTTTTATCATTTTC
ACATTGTACGGAATGATGATTGTCGCATTGACTCCTGGCCAGCAAGTTGC
TACCATTGTCTTGTCCTTCTTCCTTAGTGTATGGAACTTGTTCTCCGGTT
TCCTCGTTGCCAGATCGGATATTCCTGTCTGGTGGAGGTGGTACTACTGG
CTTTCTCCGGTGGCTTGGAATCTGTATGGCCTTGTGACTTGTCAAGTTGG
TGACTTAGAGTCACTTGTGGAGATTCCTGA
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