CX290257

Overview
NameCX290257
Unique NameCX290257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: LUCI_LUCMI (Luciferin 4-monooxygenase OS=Luciola mingrelica PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.099e-43
Identity = 102/238 (42.86%), Postives = 141/238 (59.24%), Query Frame = 1
Query:   10 YDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLH-KIYFVHAIPKSPSGKILRKDLR 720
            +DLS++  + SG APL KE+ +A+  R     + QGYG+TE      +      +P     G+ G VV   ++KVID +T  +L  N+ GEIC++GP +M GY N+PEAT  TID EGWLHT                R+K +IK+KG+QVPPAE+E++LL HP+I DA V    D  AGE+P A VV   G  +TE+ I +Y+  QVV +KRL   + FV  +PK  +GKI  K +R
Sbjct:  306 FDLSNLTEIASGGAPLAKEVGEAVARRFNLPGVRQGYGLTETTSAFIITPEGDDKP-----GASGKVVPLFKVKVIDLDTKKTLGVNRRGEICVKGPSLMLGYSNNPEATRETIDEEGWLHTGDIGYYDEDEHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPDAGELPGAVVVMEKGKTMTEKEIVDYVNSQVVNHKRLRGGVRFVDEVPKGLTGKIDAKVIR 538          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CLL3_ORYSJ (4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.486e-40
Identity = 99/248 (39.92%), Postives = 135/248 (54.44%), Query Frame = 1
Query:   16 LSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLR------AKLASSC 741
            ++S+  V  GAAP+   L        P     QGYGMTE+  V +     +K     K  S G +  N   K++  E+ + LP    GE+ + GP IMKGYL+D +      D  GWL T                R+K+ IK+KGFQ+ P ++E +L+ HP I D AV   +DE AGE+PVAFVVR +G  L+ + + EY+A QV  YKR+ K+ FV AIPKSP+GK+LR+ LR      A   SSC
Sbjct:  343 VASLVQVSCGAAPITAALIHEFLQAFPHVDFIQGYGMTESTAVGTRGFNTSKHK---KYTSVGLLAPNMHAKIVHLESSSCLPPGFSGELWLHGPGIMKGYLSDDDDACTRKD--GWLRTGDIAYFDLDGYLYIVGRLKDTIKYKGFQIAPGDLEEVLIHHPEILDVAVTSAEDEEAGEIPVAFVVRRSGSNLSCKQVMEYVAKQVAPYKRVRKVVFVEAIPKSPAGKVLRRLLRNSHDTAAAATSSC 585          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: LUCI_PHOPE (Luciferin 4-monooxygenase OS=Photuris pennsylvanica PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.258e-39
Identity = 96/241 (39.83%), Postives = 133/241 (55.19%), Query Frame = 1
Query:    1 VADYDLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLH-KIYFVHAIPKSPSGKILRKDLR 720
            V  YDLS ++ + SG APL KE+ + ++ R     + QGYG+TE    + +      +P     GS G +V    +KV+DP TG  L  N+ GE+  +G  IMK Y N+ EAT A I+ +GWL +                R+K +IK+KG+QV PAEIE +LL HP I DA V    DE AGE+P A VV   G  L E+ ++ +++ QV   K L   + F+  IPK  +GKI RK LR
Sbjct:  300 VEKYDLSHLKEIASGGAPLSKEIGEMVKKRFKLNFVRQGYGLTETTSAVLITPDTDVRP-----GSTGKIVPFHAVKVVDPTTGKILGPNETGELYFKGDMIMKSYYNNEEATKAIINKDGWLRSGDIAYYDNDGHFYIVDRLKSLIKYKGYQVAPAEIEGILLQHPYIVDAGVTGIPDEAAGELPAAGVVVQTGKYLNEQIVQNFVSSQVSTAKWLRGGVKFLDEIPKGSTGKIDRKVLR 535          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CLL8_ORYSJ (Putative 4-coumarate--CoA ligase-like 8 OS=Oryza sativa subsp. japonica GN=4CLL8 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.643e-39
Identity = 102/284 (35.92%), Postives = 145/284 (51.06%), Query Frame = 1
Query:   25 VRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMC------LGFAKQPFPTKSG----------------------------SCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATA-------ATIDVEG----WLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGF-ELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKLASS 738
            +R V+S  APL +E     RS  P   LGQ YG+TE   +++MC       G  K   P  S                             S G ++ + E K++DP++G  LP  + GE+ +RGP  M+GYLN+ EATA        ++ V G    WL T                RVKE+IK   +QV PAE+E +L +HP I DAAV P  D+ AGE+P+A+VV+  G   L E+ +  ++  +V  YK++ K+ FV +IP+SPSGKILR+ L+  L  S
Sbjct:  319 LRQVVSSGAPLQREHMARFRSCFPAVNLGQCYGLTETTGIVTMCDLQHNDNGIDKVEMPPSSTDMTFVAVAATTTEVKERSTGGGGGGGGVSIGRLMPDVEAKIVDPDSGELLPPRRTGELWVRGPSTMRGYLNNEEATALALVAAAGSVSVSGGGERWLRTGDLCYVDSRGLVYVVDRVKELIKCNAYQVAPAELEDVLATHPDIHDAAVAPYPDKEAGEIPMAYVVKKQGSGHLQEDEVISFVQNKVAPYKKIRKVVFVDSIPRSPSGKILRRQLKNLLQGS 602          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: 4CLL2_ORYSJ (4-coumarate--CoA ligase-like 2 OS=Oryza sativa subsp. japonica GN=4CLL2 PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.646e-31
Identity = 88/228 (38.60%), Postives = 115/228 (50.44%), Query Frame = 1
Query:   13 DLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMK------GYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQV---VFYKRLHKIYFV 669
            +L S+  V SGAAPL   L        P     QGYGMTE+  V +      K     K  S G +  N   K++  E+G+ LP    GE+ + GP IMK      GYLND +      D  GWL T                R+K+ IK+KGFQ+ PA++EA+L+ HP I D AV   +DE AGE+PVAFVVR +G  L+   + EY+A QV     Y   H  YF+
Sbjct:  315 ELDSLLQVSSGAAPLNHTLIHHFLHAFPHVDFIQGYGMTESTAVGTRGFNTCKHK---KYASVGLLAPNMHAKIVHLESGSCLPPGSYGELWLHGPAIMKEFCFVTGYLNDDDDAFTRKD--GWLRTGDIAYFDSDGYLFIVGRLKDTIKYKGFQIAPADLEAVLIRHPEIIDVAVTSDEDEEAGEIPVAFVVRKSGSTLSCTHVMEYVAKQVRTRRSYTTQHSPYFL 537          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 9.034e-30
Identity = 85/238 (35.71%), Postives = 123/238 (51.68%), Query Frame = 1
Query:   13 DLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPT--KSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLR 720
            D SS+R+ +SG A +   L  A   +    IL +GYG++EA PV          PF    K GS GT + + E KV+DP  G  LP +Q GE+ ++GP +MKGY   P  T   +  +GWL+T                R K++I   G+ V P E+E +L SHP + +A V+   D  +GE    +VV      +TEE I ++    +  YKR   I F+  IPK+ +GK+LR+ LR
Sbjct:  281 DFSSIRLCISGGASMPVALLTAFEEKFGVTIL-EGYGLSEASPVTCF------NPFDRGRKPGSIGTSILHVENKVVDP-LGRELPAHQVGELIVKGPNVMKGYYKMPMETEHALK-DGWLYTGDLARRDEDGYFYIVDRKKDMIIVGGYNVYPREVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPKRS-GVTEEDIMQHCEKHLAKYKRPAAITFLDDIPKNATGKMLRRALR 508          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: MENE_BACCN (2-succinylbenzoate--CoA ligase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=menE PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.541e-29
Identity = 84/238 (35.29%), Postives = 129/238 (54.20%), Query Frame = 1
Query:   19 SSVRVVLSGAAPLGKELEDA-LRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLRAKL 729
            SS+R +L G  P  K L +A ++  +P   + Q YGMTE     S     +     TK GS G  +   +L++   + G  +P N  GEI ++GP + +GY    +AT  TI V+GWLHT                R  ++I   G  + PA+IE +LLSHP + +A VV + DE  G+VPVAFVV++   ++TEE +  +   ++  YK    +YF+H +P++ S K+LR++LR  L
Sbjct:  252 SSLRCMLLGGGPAPKPLLEACVQKGIP---VYQTYGMTETS---SQICTLSADYMLTKVGSAGKPLFPCQLRI--EKDGKVMPANVEGEIVVKGPNVTRGYFKREDATRETI-VDGWLHTGDLGYVDDEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPLVLEAGVVGKSDETWGQVPVAFVVKAG--QVTEEEMIHFCEEKLAKYKVPKAVYFLHELPRNASKKLLRRELRQLL 478          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 81/238 (34.03%), Postives = 122/238 (51.26%), Query Frame = 1
Query:   13 DLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTK--SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLR 720
            D SS+ +   G  P+ + + +       Q +L +GYG+TE  P++S+       P+     SGS G  V + E K++D +    +P  QPGE+C++GPQ+M GY   P+AT   I   GWLHT                R K++I   GF V P EIE +++ HP + + A V      +GE    FVV+ +   LTEE++  +   Q+  YK    + F   +PKS  GKILR++LR
Sbjct:  323 DFSSLHLSAGGGMPVQQVVAERWVKLTGQYLL-EGYGLTECAPLVSV------NPYDIDYHSGSIGLPVPSTEAKLVDDDDN-EVPPGQPGELCVKGPQVMLGYWQRPDATDEIIK-NGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDP-SLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELR 550          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.225e-28
Identity = 81/238 (34.03%), Postives = 122/238 (51.26%), Query Frame = 1
Query:   13 DLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTK--SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLR 720
            D SS+ +   G  P+ + + +       Q +L +GYG+TE  P++S+       P+     SGS G  V + E K++D +    +P  QPGE+C++GPQ+M GY   P+AT   I   GWLHT                R K++I   GF V P EIE +++ HP + + A V      +GE    FVV+ +   LTEE++  +   Q+  YK    + F   +PKS  GKILR++LR
Sbjct:  323 DFSSLHLSAGGGMPVQQVVAERWVKLTGQYLL-EGYGLTECAPLVSV------NPYDIDYHSGSIGLPVPSTEAKLVDDDDN-EVPPGQPGELCVKGPQVMLGYWQRPDATDEIIK-NGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDP-SLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELR 550          
BLAST of CX290257 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.906e-28
Identity = 82/238 (34.45%), Postives = 121/238 (50.84%), Query Frame = 1
Query:   13 DLSSVRVVLSGAAPLGKELEDALRSRVPQAILGQGYGMTEAGPVLSMCLGFAKQPFPTK--SGSCGTVVRNAELKVIDPETGASLPHNQPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTXXXXXXXXXXXXXXXXRVKEIIKFKGFQVPPAEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELTEEAIKEYIAXQVVFYKRLHKIYFVHAIPKSPSGKILRKDLR 720
            D SS+ +   G  P+ + + +       Q +L +GYG+TE  P++S+       P+     SGS G  V + E K++D +     P  QPGE+C+RGPQ+M GY   P+AT   I   GWLHT                R K++I   GF V P EIE +++ HP + + A V      +GE    FVV+ +   LTEE++  +   Q+  YK    + F   +PKS  GKILR++LR
Sbjct:  323 DFSSLHLSAGGGMPVQQVVAERWVKLTGQYLL-EGYGLTECAPLVSV------NPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVSP-GQPGELCVRGPQVMLGYWQRPDATDEIIK-NGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDP-SLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELR 550          
The following BLAST results are available for this feature:
BLAST of CX290257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
LUCI_LUCMI1.099e-4342.86Luciferin 4-monooxygenase OS=Luciola mingrelica PE... [more]
4CLL3_ORYSJ1.486e-4039.924-coumarate--CoA ligase-like 3 OS=Oryza sativa sub... [more]
LUCI_PHOPE1.258e-3939.83Luciferin 4-monooxygenase OS=Photuris pennsylvanic... [more]
4CLL8_ORYSJ1.643e-3935.92Putative 4-coumarate--CoA ligase-like 8 OS=Oryza s... [more]
4CLL2_ORYSJ1.646e-3138.604-coumarate--CoA ligase-like 2 OS=Oryza sativa sub... [more]
LCFB_BACSU9.034e-3035.71Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
MENE_BACCN1.541e-2935.292-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
LCFA_ECOLI2.225e-2834.03Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL62.225e-2834.03Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECO572.906e-2834.45Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02022C03SK IF1 Citrus clementina cDNA clone C02022C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290257 ID=CX290257; Name=CX290257; organism=Citrus clementina; type=EST; length=746bp
GTGGCGGATTATGACCTGAGCTCGGTCAGGGTGGTGCTTTCCGGGGCGGC
GCCGCTGGGGAAGGAGCTTGAAGATGCTCTCCGAAGTAGAGTCCCTCAAG
CAATCTTGGGTCAGGGATATGGAATGACAGAGGCAGGGCCAGTGCTATCA
ATGTGCCTAGGATTTGCAAAGCAGCCATTTCCTACAAAGTCAGGATCATG
TGGCACCGTTGTTAGAAATGCTGAGCTCAAAGTTATTGACCCTGAAACTG
GTGCCTCCCTTCCCCACAATCAACCTGGCGAAATTTGCATCCGCGGCCCT
CAAATTATGAAAGGTTACTTGAATGATCCTGAGGCAACTGCGGCAACTAT
AGACGTTGAGGGTTGGCTTCATACTGGTGACATAGGCTTTGTTGATGATG
ATGATGAGGTTTTCATAGTCGATAGGGTCAAGGAAATCATCAAATTCAAA
GGATTCCAGGTGCCGCCGGCGGAGATTGAAGCCCTCCTTTTAAGCCACCC
ATCAATTGCAGATGCAGCTGTGGTTCCGCAAAAAGATGAAGTTGCAGGAG
AAGTTCCAGTTGCATTTGTAGTTCGATCAAATGGGTTTGAACTTACCGAG
GAAGCCATTAAAGAATACATAGCANAACAGGTAGTGTTTTACAAGAGACT
GCACAAGATTTATTTTGTTCATGCGATTCCAAAATCTCCTTCCGGTAAGA
TTTTGAGGAAAGATCTCAGAGCCAAGCTGGCCTCTTCATGCCCTTG
back to top