CX290266

Overview
NameCX290266
Unique NameCX290266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig278 contig Ccv1_Contig278:1..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_NITMS (DNA polymerase sliding clamp OS=Nitrosopumilus maritimus (strain SCM1) GN=pcn PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.873e-18
Identity = 59/208 (28.37%), Postives = 102/208 (49.04%), Query Frame = 3
Query:   96 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEA-TIIEMHEPVSLTFALRYMNSFTRA 716
            LK ++ AI  LV +A F  +A G S + MD SHVAL+ +   +  FE Y CD +I  G+ ++  SK++K A   D I +   + +  +       T  K   ++M+L++  +    +P+  Y + + + S++F +I  D+  + D + +  +     FS +GD G   I L      DK +E    I   E    T++L Y+N   +A
Sbjct:   13 LKAIISAISTLVEEATFVATAEGISFRGMDPSHVALIDISWPNSAFEKYECDSDIKFGVRIDEFSKLIKRADKKDSIEISISEQNMLLV------TVGKNKKYKMRLIESSATDTPLPKIPYDSKIILSSSKFDKILGDVQVVSDYLTIHTSDSKGDFSGKGDSGEVVIDL------DKDDEGIEEISSKEDSVGTYSLEYLNPVVKA 208          
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METM7 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pcn PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17
Identity = 57/215 (26.51%), Postives = 99/215 (46.05%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  + FE Y  D    +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + + ++     ++GD+  +  V   N+  D         M E    TF L Y+   T++T   + + I
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDLEALKKIIARGRGDEKLILDLDTEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNSVSIKAGAFVEALKDAELVNDHITLKIDEDKFIIYSKGDLNQSETVF-DNSIEDDDNALAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKI 221          
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METM6 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pcn PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17
Identity = 60/217 (27.65%), Postives = 104/217 (47.93%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIE--MHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  E FE Y  D +  +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + V ++     ++GD+  +  V        + ++AT+ E  M E    TF L Y+   T++T   + + I
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKEVFEEYEGDIH-DIGIDLEALKKIIARGKGDEKLILDLDVEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNNVSIKAGAFVEALKDAELVNDHITLKVDEDKFIIYSKGDLNQSETVFDNGI---EDDDATLAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKI 221          
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METM5 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pcn PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17
Identity = 58/215 (26.98%), Postives = 100/215 (46.51%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  + FE Y  D +  +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + V ++     ++GD+  +  V   N   D  +      M E    TF L Y+   T++T   + + I
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDVH-DIGIDLEALKKIIARGKGDEKLILDLDAEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNNVSIKAGAFVEALKDAELVNDHITLKVDEDKFIIYSKGDLNQSETVF-DNGVDDDDDTLAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKI 221          
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METMP (DNA polymerase sliding clamp OS=Methanococcus maripaludis GN=pcn PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 57/215 (26.51%), Postives = 98/215 (45.58%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            KKV+ A   LV++  F+    G    AMD SHVALV++ +  + FE Y  D    +G++L  + K++     D+ + L  D   + +   F+S    K   F + L D+ S +L +P+ EY   V + +  F    KD   + D + + + +      ++GD+  +  V   N+  D         M E    TF L Y+   T++T   + + I
Sbjct:   12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDLEALKKIIARGRGDEKLILDLDVEKNKLNITFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNSVSIKAGAFVEALKDAELVNDHITLKIDENKFVIYSKGDLNQSETVF-DNSIDDDDNALADFNMGEASRSTFNLAYLKDLTKSTAAEDLLKI 221          
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METTH (DNA polymerase sliding clamp OS=Methanobacterium thermoautotrophicum GN=pcn PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 53/191 (27.75%), Postives = 90/191 (47.12%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKP 635
            M +  L   ++L+   +AI  +V++     SA G  L A+D SH+  V L L++E F+ Y CD    + ++   + K+LK A  +D + L  D+G+  + F  E+     +  F+++L+DI+ E    PE EY     +P         D+    D +   V ++    S  G+ G A I       +DKP
Sbjct:    1 MFKAELNDPNILRTSFDAISSIVDEVQIQLSAEGLRLDALDRSHITYVHLELKAELFDEYVCDEPERINVDTEELMKVLKRAKANDRVILSTDEGNLIIQFEGEA-----VRTFKIRLIDIEYETPSPPEIEYENEFEVPFQLLKDSIADIDIFSDKITFRVDEDRFIASAEGEFGDAQIEYLHGERIDKP 186          
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METJA (DNA polymerase sliding clamp OS=Methanocaldococcus jannaschii GN=pcn PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 56/217 (25.81%), Postives = 101/217 (46.54%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATII--EMHEPVSLTFALRYMNSFTRATPLSNTVTI 743
            KKV++ I  L+++  F+    G    AMD SHVALV+L +    FE Y  D +  +G++L    K++  A   D + L+ D+  + +  +FE+  + K   F + L+DI +  + +PE EY  ++ +    F    KD     D V++   ++      +GD       L +N  + + + + II  E+ E     F L Y+    +     + + I
Sbjct:   13 KKVVDTISTLLDEICFEVDEEGIKASAMDPSHVALVSLEIPRLAFEEYEADSH-DIGIDLEAFKKVMNRAKAKDRLILELDEEKNKLNVIFENTGKRK---FSLALLDISASSVKVPEIEYPNVIMIKGDAFKEALKDADLFSDYVILKADEDKFVIHAKGD-------LNENEAIFEKDSSAIISLEVKEEAKSAFNLDYLMDMVKGVSSGDIIKI 218          
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_META3 (DNA polymerase sliding clamp OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=pcn PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 57/210 (27.14%), Postives = 108/210 (51.43%), Query Frame = 3
Query:   99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKF--STRGDIGTANIVLRQNTTVDKPEEATI-IEMHEPVSLTFALRYMNSFTRAT 719
            KK++++I  LV++  F+    G    AMD SHVAL+++ +  E F+ Y  D +  +G++L  + K++  A  ++ + L+ D   + +  + ++    K   F + L D+ S ++ +PE  Y   V + +       KD   + D V + +T++G KF   ++GDI T        T +D+  E+ I +++ E    T+ L Y+   T+AT
Sbjct:   12 KKIIDSISNLVDEICFEVDELGIKANAMDPSHVALISVNIPKESFDEYVSDTH-DIGVDLEALKKIMNRAKPNEKLMLELDMEKNKLDIILKNEGTRK---FSISLYDVSSSNVKVPEIGYPNEVMIKAGTIVESLKDAELVNDHVSLKITEDG-KFIIYSKGDINT------NETVLDRDNESIIELKISESSKSTYNLAYLKDITKAT 210          
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METST (DNA polymerase sliding clamp OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pcn PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3
Query:   63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANI 602
            M +L L   S+ K   +AI  +V++   +  + G  L A+D SH+  V L L+   F+ Y CD+ I + ++   + K+LK + NDD++ L  D G+  +T  FE   +     F++KL+D++ +    P+  Y   + +P +      +D+  + D V   V ++ +     GD   A I
Sbjct:    1 MFKLVLSDPSIFKTSFDAISSIVDEVQIEVDSDGLRLNAIDRSHITYVHLELKESLFDIYECDKPIKLNLDTEELMKVLKRSKNDDVMELTVDVGNLILT--FEGAVK---KTFKVKLIDLEYDTPSQPDIPYDIKIPIPVSILKEAIQDIEIVSDRVSFEVDEDKLTLEAVGDFADAKI 175          
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA1_PYRAE (DNA polymerase sliding clamp A OS=Pyrobaculum aerophilum GN=pcnA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 55/214 (25.70%), Postives = 102/214 (47.66%), Query Frame = 3
Query:  105 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFT-RATPLSNTVTI 743
            ++++I  LV +ANF     G  L+A+D S  A+V L +  E FE +     +  G+N   + K+L+     D I+++ ++G   +  + +S     +    +  +++  E L  P+  Y A+V+  S   A   KD  ++ D V    ++E +  S   D G   + L +N+     E     ++ EP S  F+L Y+   T + + +S+ VTI
Sbjct:   17 IIDSISVLVEEANFLIRNDGLYLRALDVSRTAMVDLAIPKESFEEFPEVEELRFGLNFKELKKLLRRVKKGDKISMEFEEGRVRIKLIGKS-----VRSIVVPSIEVVGEELPTPKVVYTAMVKAASDVLATAVKDADAVADEVKFEASEEALIISASSDKGEVEVKLDKNS-----ELVYEFDVKEPASARFSLEYLVDITSKTSKISDIVTI 220          
The following BLAST results are available for this feature:
BLAST of CX290266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PCNA_NITMS7.873e-1828.37DNA polymerase sliding clamp OS=Nitrosopumilus mar... [more]
PCNA_METM73.908e-1726.51DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METM63.908e-1727.65DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METM55.103e-1726.98DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METMP8.705e-1726.51DNA polymerase sliding clamp OS=Methanococcus mari... [more]
PCNA_METTH3.308e-1627.75DNA polymerase sliding clamp OS=Methanobacterium t... [more]
PCNA_METJA7.369e-1625.81DNA polymerase sliding clamp OS=Methanocaldococcus... [more]
PCNA_META37.369e-1627.14DNA polymerase sliding clamp OS=Methanococcus aeol... [more]
PCNA_METST2.800e-1527.22DNA polymerase sliding clamp OS=Methanosphaera sta... [more]
PCNA1_PYRAE8.148e-1525.70DNA polymerase sliding clamp A OS=Pyrobaculum aero... [more]

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Properties
Property NameValue
Genbank descriptionC02022D01SK IF1 Citrus clementina cDNA clone C02022D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290266 ID=CX290266; Name=CX290266; organism=Citrus clementina; type=EST; length=743bp
GAATTCGGCACGAGGGATCTTTCAAACCCTAACCCTAATTTCCCAAGAAA
CTCGCAGCAAAAATGCTTGAGCTAAGGCTAGTTCAAGGATCCCTTCTCAA
GAAAGTGCTGGAGGCCATCAAGGAGCTGGTCAACGATGCCAACTTTGACT
GCTCGGCCACCGGTTTCTCTCTTCAAGCCATGGACTCCAGCCACGTGGCG
CTGGTGGCCCTGCTGCTCAGATCGGAAGGCTTCGAGCACTACCGCTGTGA
CCGGAATATCTCTATGGGAATGAATCTCAATAACGTGTCGAAGATGCTTA
AGTGTGCTGGCAACGATGACATCATCACTCTCAAGGCCGACGACGGCAGC
GATACCGTTACTTTCATGTTTGAAAGTCCCACTCAAGATAAGATTGCTGA
TTTTGAGATGAAACTGATGGACATTGATAGTGAGCATCTTGGTATACCGG
AGGCTGAATACCATGCCATTGTAAGGATGCCTTCAGCTGAGTTTGCTAGA
ATTTGTAAAGATCTTGCCAGCATTGGTGACACAGTCGTGGTTTCTGTCAC
AAAGGAAGGTGTGAAGTTCTCTACCAGAGGTGATATTGGAACTGCTAATA
TTGTGCTCAGGCAAAATACTACAGTAGACAAGCCAGAAGAAGCAACAATA
ATTGAAATGCATGAGCCAGTGTCATTGACTTTTGCTCTGAGATACATGAA
TTCATTCACAAGGGCTACTCCACTGTCGAATACTGTTACTATC
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