CX290266
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_NITMS (DNA polymerase sliding clamp OS=Nitrosopumilus maritimus (strain SCM1) GN=pcn PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.873e-18 Identity = 59/208 (28.37%), Postives = 102/208 (49.04%), Query Frame = 3 Query: 96 LKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEA-TIIEMHEPVSLTFALRYMNSFTRA 716 LK ++ AI LV +A F +A G S + MD SHVAL+ + + FE Y CD +I G+ ++ SK++K A D I + + + + T K ++M+L++ + +P+ Y + + + S++F +I D+ + D + + + FS +GD G I L DK +E I E T++L Y+N +A Sbjct: 13 LKAIISAISTLVEEATFVATAEGISFRGMDPSHVALIDISWPNSAFEKYECDSDIKFGVRIDEFSKLIKRADKKDSIEISISEQNMLLV------TVGKNKKYKMRLIESSATDTPLPKIPYDSKIILSSSKFDKILGDVQVVSDYLTIHTSDSKGDFSGKGDSGEVVIDL------DKDDEGIEEISSKEDSVGTYSLEYLNPVVKA 208
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METM7 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pcn PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17 Identity = 57/215 (26.51%), Postives = 99/215 (46.05%), Query Frame = 3 Query: 99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743 KKV+ A LV++ F+ G AMD SHVALV++ + + FE Y D +G++L + K++ D+ + L D + + F+S K F + L D+ S +L +P+ EY V + + F KD + D + + + ++ ++GD+ + V N+ D M E TF L Y+ T++T + + I Sbjct: 12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDLEALKKIIARGRGDEKLILDLDTEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNSVSIKAGAFVEALKDAELVNDHITLKIDEDKFIIYSKGDLNQSETVF-DNSIEDDDNALAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKI 221
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METM6 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pcn PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.908e-17 Identity = 60/217 (27.65%), Postives = 104/217 (47.93%), Query Frame = 3 Query: 99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIE--MHEPVSLTFALRYMNSFTRATPLSNTVTI 743 KKV+ A LV++ F+ G AMD SHVALV++ + E FE Y D + +G++L + K++ D+ + L D + + F+S K F + L D+ S +L +P+ EY V + + F KD + D + + V ++ ++GD+ + V + ++AT+ E M E TF L Y+ T++T + + I Sbjct: 12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKEVFEEYEGDIH-DIGIDLEALKKIIARGKGDEKLILDLDVEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNNVSIKAGAFVEALKDAELVNDHITLKVDEDKFIIYSKGDLNQSETVFDNGI---EDDDATLAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKI 221
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METM5 (DNA polymerase sliding clamp OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pcn PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17 Identity = 58/215 (26.98%), Postives = 100/215 (46.51%), Query Frame = 3 Query: 99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743 KKV+ A LV++ F+ G AMD SHVALV++ + + FE Y D + +G++L + K++ D+ + L D + + F+S K F + L D+ S +L +P+ EY V + + F KD + D + + V ++ ++GD+ + V N D + M E TF L Y+ T++T + + I Sbjct: 12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDVH-DIGIDLEALKKIIARGKGDEKLILDLDAEKNKLNVTFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNNVSIKAGAFVEALKDAELVNDHITLKVDEDKFIIYSKGDLNQSETVF-DNGVDDDDDTLAEFNMGEASRSTFNLAYLKDLTKSTAAEDLLKI 221
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METMP (DNA polymerase sliding clamp OS=Methanococcus maripaludis GN=pcn PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17 Identity = 57/215 (26.51%), Postives = 98/215 (45.58%), Query Frame = 3 Query: 99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTI 743 KKV+ A LV++ F+ G AMD SHVALV++ + + FE Y D +G++L + K++ D+ + L D + + F+S K F + L D+ S +L +P+ EY V + + F KD + D + + + + ++GD+ + V N+ D M E TF L Y+ T++T + + I Sbjct: 12 KKVINATSNLVDEICFEVDENGIKASAMDPSHVALVSMEMPKDVFEEYEGDIQ-DIGIDLEALKKIIARGRGDEKLILDLDVEKNKLNITFKSNVTRK---FSIALYDVSSSNLKVPDIEYPNSVSIKAGAFVEALKDAELVNDHITLKIDENKFVIYSKGDLNQSETVF-DNSIDDDDNALADFNMGEASRSTFNLAYLKDLTKSTAAEDLLKI 221
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METTH (DNA polymerase sliding clamp OS=Methanobacterium thermoautotrophicum GN=pcn PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16 Identity = 53/191 (27.75%), Postives = 90/191 (47.12%), Query Frame = 3 Query: 63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKP 635 M + L ++L+ +AI +V++ SA G L A+D SH+ V L L++E F+ Y CD + ++ + K+LK A +D + L D+G+ + F E+ + F+++L+DI+ E PE EY +P D+ D + V ++ S G+ G A I +DKP Sbjct: 1 MFKAELNDPNILRTSFDAISSIVDEVQIQLSAEGLRLDALDRSHITYVHLELKAELFDEYVCDEPERINVDTEELMKVLKRAKANDRVILSTDEGNLIIQFEGEA-----VRTFKIRLIDIEYETPSPPEIEYENEFEVPFQLLKDSIADIDIFSDKITFRVDEDRFIASAEGEFGDAQIEYLHGERIDKP 186
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METJA (DNA polymerase sliding clamp OS=Methanocaldococcus jannaschii GN=pcn PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16 Identity = 56/217 (25.81%), Postives = 101/217 (46.54%), Query Frame = 3 Query: 99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATII--EMHEPVSLTFALRYMNSFTRATPLSNTVTI 743 KKV++ I L+++ F+ G AMD SHVALV+L + FE Y D + +G++L K++ A D + L+ D+ + + +FE+ + K F + L+DI + + +PE EY ++ + F KD D V++ ++ +GD L +N + + + + II E+ E F L Y+ + + + I Sbjct: 13 KKVVDTISTLLDEICFEVDEEGIKASAMDPSHVALVSLEIPRLAFEEYEADSH-DIGIDLEAFKKVMNRAKAKDRLILELDEEKNKLNVIFENTGKRK---FSLALLDISASSVKVPEIEYPNVIMIKGDAFKEALKDADLFSDYVILKADEDKFVIHAKGD-------LNENEAIFEKDSSAIISLEVKEEAKSAFNLDYLMDMVKGVSSGDIIKI 218
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_META3 (DNA polymerase sliding clamp OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=pcn PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16 Identity = 57/210 (27.14%), Postives = 108/210 (51.43%), Query Frame = 3 Query: 99 KKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKF--STRGDIGTANIVLRQNTTVDKPEEATI-IEMHEPVSLTFALRYMNSFTRAT 719 KK++++I LV++ F+ G AMD SHVAL+++ + E F+ Y D + +G++L + K++ A ++ + L+ D + + + ++ K F + L D+ S ++ +PE Y V + + KD + D V + +T++G KF ++GDI T T +D+ E+ I +++ E T+ L Y+ T+AT Sbjct: 12 KKIIDSISNLVDEICFEVDELGIKANAMDPSHVALISVNIPKESFDEYVSDTH-DIGVDLEALKKIMNRAKPNEKLMLELDMEKNKLDIILKNEGTRK---FSISLYDVSSSNVKVPEIGYPNEVMIKAGTIVESLKDAELVNDHVSLKITEDG-KFIIYSKGDINT------NETVLDRDNESIIELKISESSKSTYNLAYLKDITKAT 210
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA_METST (DNA polymerase sliding clamp OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pcn PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15 Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3 Query: 63 MLELRLVQGSLLKKVLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANI 602 M +L L S+ K +AI +V++ + + G L A+D SH+ V L L+ F+ Y CD+ I + ++ + K+LK + NDD++ L D G+ +T FE + F++KL+D++ + P+ Y + +P + +D+ + D V V ++ + GD A I Sbjct: 1 MFKLVLSDPSIFKTSFDAISSIVDEVQIEVDSDGLRLNAIDRSHITYVHLELKESLFDIYECDKPIKLNLDTEELMKVLKRSKNDDVMELTVDVGNLILT--FEGAVK---KTFKVKLIDLEYDTPSQPDIPYDIKIPIPVSILKEAIQDIEIVSDRVSFEVDEDKLTLEAVGDFADAKI 175
BLAST of CX290266 vs. ExPASy Swiss-Prot
Match: PCNA1_PYRAE (DNA polymerase sliding clamp A OS=Pyrobaculum aerophilum GN=pcnA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15 Identity = 55/214 (25.70%), Postives = 102/214 (47.66%), Query Frame = 3 Query: 105 VLEAIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHYRCDRNISMGMNLNNVSKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFARICKDLASIGDTVVVSVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFT-RATPLSNTVTI 743 ++++I LV +ANF G L+A+D S A+V L + E FE + + G+N + K+L+ D I+++ ++G + + +S + + +++ E L P+ Y A+V+ S A KD ++ D V ++E + S D G + L +N+ E ++ EP S F+L Y+ T + + +S+ VTI Sbjct: 17 IIDSISVLVEEANFLIRNDGLYLRALDVSRTAMVDLAIPKESFEEFPEVEELRFGLNFKELKKLLRRVKKGDKISMEFEEGRVRIKLIGKS-----VRSIVVPSIEVVGEELPTPKVVYTAMVKAASDVLATAVKDADAVADEVKFEASEEALIISASSDKGEVEVKLDKNS-----ELVYEFDVKEPASARFSLEYLVDITSKTSKISDIVTI 220 The following BLAST results are available for this feature:
BLAST of CX290266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290266 ID=CX290266; Name=CX290266; organism=Citrus clementina; type=EST; length=743bpback to top |