CX290271

Overview
NameCX290271
Unique NameCX290271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9909 contig Ccv1_Contig9909:671..1376. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290271 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.735e-88
Identity = 160/197 (81.22%), Postives = 172/197 (87.31%), Query Frame = 3
Query:    3 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 593
            VLISTQHDETVTND+IA DLKEHVIKPVIP +YLDE TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDF+WE VK LK
Sbjct:  191 VLISTQHDETVTNDQIAQDLKEHVIKPVIPSQYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFSWETVKVLK 387          
BLAST of CX290271 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 2.960e-88
Identity = 161/203 (79.31%), Postives = 174/203 (85.71%), Query Frame = 3
Query:    3 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 611
            +LISTQHDETVTND+IA DLKEHVIKPV+P +YLDE TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK L    PQA
Sbjct:  191 ILISTQHDETVTNDQIAQDLKEHVIKPVVPAEYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL---NPQA 390          
BLAST of CX290271 vs. ExPASy Swiss-Prot
Match: METK2_ACTCH (S-adenosylmethionine synthetase 2 OS=Actinidia chinensis GN=SAM2 PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.125e-87
Identity = 157/197 (79.70%), Postives = 172/197 (87.31%), Query Frame = 3
Query:    3 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 593
            VLISTQHDETVTN++IA DLKEHVIKPVIP +Y+D+ TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAY+VRQAAKS+VA+GLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++KE+FDFRPGM+ INLDLKRGGN R+ KTAAYGHFGRDD D TWE VK LK
Sbjct:  191 VLISTQHDETVTNEQIAKDLKEHVIKPVIPAQYMDDDTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAAYGHFGRDDADLTWETVKILK 387          
BLAST of CX290271 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.506e-87
Identity = 159/203 (78.33%), Postives = 173/203 (85.22%), Query Frame = 3
Query:    3 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 611
            +LISTQHDETVTND+IA DLKEHVIKPV+P +YLDE TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IP K++L ++KE+FDFRPGMM+INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK L    PQA
Sbjct:  191 ILISTQHDETVTNDQIAQDLKEHVIKPVVPAEYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPGKDVLTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL---NPQA 390          
BLAST of CX290271 vs. ExPASy Swiss-Prot
Match: METK1_ACTCH (S-adenosylmethionine synthetase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.506e-87
Identity = 157/197 (79.70%), Postives = 172/197 (87.31%), Query Frame = 3
Query:    3 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 593
            VLISTQHDETVTND+IA DLK+HVIKPV+P +YLD+ TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKS+VA+GLARRC+VQVSYAIGV EPLSVFVD+Y TGKI DK+IL ++KE+FDFRPGM+ INLDLKRGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  191 VLISTQHDETVTNDQIANDLKKHVIKPVVPAQYLDDNTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVAEPLSVFVDTYKTGKIADKDILALIKENFDFRPGMIAINLDLKRGGNLRYQKTAAYGHFGRDDPDFTWETVKILK 387          
BLAST of CX290271 vs. ExPASy Swiss-Prot
Match: METK3_CATRO (S-adenosylmethionine synthetase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.243e-86
Identity = 156/197 (79.19%), Postives = 172/197 (87.31%), Query Frame = 3
Query:    3 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 593
            VLISTQHDETVTN++IA DLKEHVIKPVIP +YLD++TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKS+VA+GLARRC+VQVSYAIGV EPLSVFVD++ TGKIPDK+IL ++KE+FDFRPGM+ INLDLKRGGN R+ KTAA GH GRDDPDFTWE VK LK
Sbjct:  191 VLISTQHDETVTNEQIAQDLKEHVIKPVIPAQYLDDQTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVAEPLSVFVDTFKTGKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAALGHLGRDDPDFTWETVKILK 387          
BLAST of CX290271 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 8.060e-86
Identity = 157/197 (79.70%), Postives = 168/197 (85.28%), Query Frame = 3
Query:    3 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 593
            VLISTQHDE VTN++IA DLKEHVIKPVIP KYLDE TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKS+VA GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGM+ INLDL RGGN R+ KTAAYGHFGRD+ DFTWE VK LK
Sbjct:  191 VLISTQHDEGVTNEQIAQDLKEHVIKPVIPAKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGEGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILALIKENFDFRPGMIAINLDLLRGGNFRYQKTAAYGHFGRDEADFTWETVKALK 387          
BLAST of CX290271 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.061e-82
Identity = 145/197 (73.60%), Postives = 166/197 (84.26%), Query Frame = 3
Query:    3 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 593
            +LISTQH+  VTN++I  DL EHVIKPV+P KYLD+KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYI RQAAKS+VA+GLA+RC+VQVSY+I V EPLSVFVD+YGTG +PD EILK++++ FDFRPG++  NLDLKRGGN R+ KTAAYGHFGRDDPDFTWE VK L+
Sbjct:  194 ILISTQHNPDVTNEKIREDLMEHVIKPVVPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSVVASGLAKRCLVQVSYSIAVAEPLSVFVDTYGTGTMPDAEILKLIRKHFDFRPGLIGKNLDLKRGGNKRYQKTAAYGHFGRDDPDFTWETVKKLE 390          
BLAST of CX290271 vs. ExPASy Swiss-Prot
Match: METK2_PEA (S-adenosylmethionine synthetase 2 OS=Pisum sativum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 5.240e-80
Identity = 149/181 (82.32%), Postives = 158/181 (87.29%), Query Frame = 3
Query:    3 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 545
            VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF  GGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVR+AAKSIVANGLARRC+VQVSYAIGVPEPLSVFVDSYGTGKIPD+EIL IVKE+FDFRPGM++I+LDL RGGNGRF + +    F
Sbjct:  193 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFRHGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVREAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGKIPDREILNIVKEAFDFRPGMISISLDLLRGGNGRFFEDSCIWTF 373          

HSP 2 Score: 23.0978 bits (48), Expect = 5.240e-80
Identity = 6/9 (66.67%), Postives = 7/9 (77.78%), Query Frame = 2
Query:  521 EDCCLWTLW 547
            ED C+WT W
Sbjct:  366 EDSCIWTFW 374          
BLAST of CX290271 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.862e-74
Identity = 144/198 (72.73%), Postives = 155/198 (78.28%), Query Frame = 3
Query:    3 VLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDD--PDFTWEVVKPL 590
            +LISTQH E VTN++IA DL   VIK V+PEKYLD  TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYI RQAAKS+VA GLARRC+ Q+SYAIGV EPLSV VD+YGTGKIPD EIL  VK +FDFRPGMM   LDLKRGGN R+  TAAYGHFGRD+    FTWE V PL
Sbjct:  190 ILISTQHIEGVTNEKIAEDLMNEVIKKVVPEKYLDADTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYISRQAAKSVVAAGLARRCLFQISYAIGVAEPLSVHVDTYGTGKIPDSEILAKVKAAFDFRPGMMGKALDLKRGGNKRYQTTAAYGHFGRDEDLDIFTWEKVVPL 387          
The following BLAST results are available for this feature:
BLAST of CX290271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_TOBAC1.735e-8881.22S-adenosylmethionine synthetase 1 OS=Nicotiana tab... [more]
METK1_PETHY2.960e-8879.31S-adenosylmethionine synthetase 1 OS=Petunia hybri... [more]
METK2_ACTCH1.125e-8779.70S-adenosylmethionine synthetase 2 OS=Actinidia chi... [more]
METK2_PETHY2.506e-8778.33S-adenosylmethionine synthetase 2 OS=Petunia hybri... [more]
METK1_ACTCH2.506e-8779.70S-adenosylmethionine synthetase 1 OS=Actinidia chi... [more]
METK3_CATRO1.243e-8679.19S-adenosylmethionine synthetase 3 OS=Catharanthus ... [more]
METK2_TOBAC8.060e-8679.70S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]
METK_CHLRE7.061e-8273.60S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK2_PEA5.240e-8082.32S-adenosylmethionine synthetase 2 OS=Pisum sativum... [more]
METK_OSTLU1.862e-7472.73S-adenosylmethionine synthetase OS=Ostreococcus lu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02022D06SK IF1 Citrus clementina cDNA clone C02022D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290271 ID=CX290271; Name=CX290271; organism=Citrus clementina; type=EST; length=706bp
GGGTCCTCATTTCAACCCAGCATGATGAGACTGTCACAAATGATGAAATT
GCTGCTGACCTTAAGGAGCACGTCATTAAGCCTGTCATCCCCGAGAAGTA
CCTTGATGAGAAGACCATCTTCCACCTTAATCCATCAGGTCGTTTTGTCA
TTGGTGGGCCTCATGGTGATGCTGGTCTCACTGGACGTAAGATCATCATC
GACACTTATGGTGGCTGGGGAGCCCATGGTGGCGGTGCTTTCTCTGGAAA
AGACCCTACTAAGGTGGATAGGAGTGGTGCATACATTGTTAGGCAGGCTG
CTAAGAGCATTGTTGCAAACGGGCTTGCTCGCAGGTGCATTGTCCAAGTC
TCCTATGCCATTGGTGTGCCTGAGCCATTGTCTGTTTTTGTGGACTCATA
TGGAACCGGCAAGATTCCTGACAAGGAGATCCTCAAAATTGTGAAGGAAA
GCTTTGATTTCAGGCCAGGAATGATGACCATCAATTTGGATCTCAAAAGG
GGCGGTAATGGCAGGTTCTTGAAGACTGCTGCCTATGGACACTTTGGCAG
GGATGACCCAGACTTCACTTGGGAAGTTGTGAAGCCCCTCAAGTGGGAAA
AGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAAAACTATCCCTGCTGTTC
AAGTTTGCTTCTATTGGTAGTGGATGAATAATTTGAATATTATCTTGCTG
CTGCTT
back to top