CX290272

Overview
NameCX290272
Unique NameCX290272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STRP6 (Transketolase OS=Streptococcus pyogenes serotype M6 GN=tkt PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.553e-53
Identity = 120/230 (52.17%), Postives = 151/230 (65.65%), Query Frame = 1
Query:   70 TLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT---SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            T++K   DFQ    E RNV FGVRE  M A  NGIALH  G   Y  TFFVF++Y+  A+R++AL     +YVMTHDSI +GEDGPTH+PIE LAS R+MPN+ ++RPADGNET  A+K A+A   RP++L L+RQ LP L GT   + DG+ KGAYI+S+  +    + ILI TGS               G  VRVVS  S  +FDEQS  YKES+LPAAV+ R++IE
Sbjct:  453 TMVKAETDFQPGHYEGRNVWFGVREFAMAAAMNGIALHG-GTRVYGGTFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHEPIEQLASVRSMPNLNVIRPADGNETNAAWKRAIAETDRPTMLVLTRQNLPVLEGTKELAEDGLNKGAYILSE--AKGDLEGILIATGSEVKLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIE 679          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_BACSU (Transketolase OS=Bacillus subtilis GN=tkt PE=3 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 7.708e-53
Identity = 116/230 (50.43%), Postives = 146/230 (63.48%), Query Frame = 1
Query:   70 TLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS---IDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            T +K  GDF       +N  FGVRE  MGA  NG+ALH  GL  +  TFFVF+DY+R AIR++AL    V YV THDSI +GEDGPTH+P+E LAS RAMPN+ ++RPADGNETA A+K+AV +   P+ L L+RQ LP +  TS   + GVEKGAY++S  S    PD +LI +GS             K    V VVS  S + F++QSD YK  VLPA V  R++IE
Sbjct:  387 TTIKNAGDFTAVDYSGKNFWFGVREFAMGAALNGMALHG-GLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPVEQLASLRAMPNLSLIRPADGNETAAAWKLAVQSTDHPTALVLTRQNLPTIDQTSEEALAGVEKGAYVVS-KSKNETPDALLIASGSEVGLAIEAQAELAKENIDVSVVSMPSMDRFEKQSDEYKNEVLPADVKKRLAIE 614          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STAAW (Transketolase OS=Staphylococcus aureus (strain MW2) GN=tkt PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 107/223 (47.98%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   91 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL---AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            D+  +TPE +NV FGVRE  MGA  NG+A H  GL PY ATFFVF+DY++ A+R+S++      ++ THDSI +GEDGPTH+PIE LA  RA+PN+ ++RPADGNET  A++VA+ +   P+ L L+RQ LP L        +GV KGAY +    S   P+ +L+ +GS             K GK+VRVVS  +W  F++QS+ YKESV+P++V+ RV+IE
Sbjct:  393 DYSSETPEGKNVWFGVREFAMGAAVNGMAAHG-GLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAGLRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTV--YGSEETPEFLLLASGSEVSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESVIPSSVTKRVAIE 612          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STAAS (Transketolase OS=Staphylococcus aureus (strain MSSA476) GN=tkt PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 107/223 (47.98%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   91 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL---AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            D+  +TPE +NV FGVRE  MGA  NG+A H  GL PY ATFFVF+DY++ A+R+S++      ++ THDSI +GEDGPTH+PIE LA  RA+PN+ ++RPADGNET  A++VA+ +   P+ L L+RQ LP L        +GV KGAY +    S   P+ +L+ +GS             K GK+VRVVS  +W  F++QS+ YKESV+P++V+ RV+IE
Sbjct:  393 DYSSETPEGKNVWFGVREFAMGAAVNGMAAHG-GLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAGLRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTV--YGSEETPEFLLLASGSEVSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESVIPSSVTKRVAIE 612          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STAAR (Transketolase OS=Staphylococcus aureus (strain MRSA252) GN=tkt PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 107/223 (47.98%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   91 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL---AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            D+  +TPE +NV FGVRE  MGA  NG+A H  GL PY ATFFVF+DY++ A+R+S++      ++ THDSI +GEDGPTH+PIE LA  RA+PN+ ++RPADGNET  A++VA+ +   P+ L L+RQ LP L        +GV KGAY +    S   P+ +L+ +GS             K GK+VRVVS  +W  F++QS+ YKESV+P++V+ RV+IE
Sbjct:  393 DYSSETPEGKNVWFGVREFAMGAAVNGMAAHG-GLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAGLRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTV--YGSEETPEFLLLASGSEVSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESVIPSSVTKRVAIE 612          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STAAN (Transketolase OS=Staphylococcus aureus (strain N315) GN=tkt PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 107/223 (47.98%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   91 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL---AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            D+  +TPE +NV FGVRE  MGA  NG+A H  GL PY ATFFVF+DY++ A+R+S++      ++ THDSI +GEDGPTH+PIE LA  RA+PN+ ++RPADGNET  A++VA+ +   P+ L L+RQ LP L        +GV KGAY +    S   P+ +L+ +GS             K GK+VRVVS  +W  F++QS+ YKESV+P++V+ RV+IE
Sbjct:  393 DYSSETPEGKNVWFGVREFAMGAAVNGMAAHG-GLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAGLRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTV--YGSEETPEFLLLASGSEVSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESVIPSSVTKRVAIE 612          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STAAM (Transketolase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=tkt PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 107/223 (47.98%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   91 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL---AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            D+  +TPE +NV FGVRE  MGA  NG+A H  GL PY ATFFVF+DY++ A+R+S++      ++ THDSI +GEDGPTH+PIE LA  RA+PN+ ++RPADGNET  A++VA+ +   P+ L L+RQ LP L        +GV KGAY +    S   P+ +L+ +GS             K GK+VRVVS  +W  F++QS+ YKESV+P++V+ RV+IE
Sbjct:  393 DYSSETPEGKNVWFGVREFAMGAAVNGMAAHG-GLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAGLRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTV--YGSEETPEFLLLASGSEVSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESVIPSSVTKRVAIE 612          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STAAC (Transketolase OS=Staphylococcus aureus (strain COL) GN=tkt PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 107/223 (47.98%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   91 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL---AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            D+  +TPE +NV FGVRE  MGA  NG+A H  GL PY ATFFVF+DY++ A+R+S++      ++ THDSI +GEDGPTH+PIE LA  RA+PN+ ++RPADGNET  A++VA+ +   P+ L L+RQ LP L        +GV KGAY +    S   P+ +L+ +GS             K GK+VRVVS  +W  F++QS+ YKESV+P++V+ RV+IE
Sbjct:  393 DYSSETPEGKNVWFGVREFAMGAAVNGMAAHG-GLHPYGATFFVFSDYLKPALRLSSIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAGLRAIPNMNVIRPADGNETRVAWEVALESESTPTSLVLTRQNLPVLDVPEDVVEEGVRKGAYTV--YGSEETPEFLLLASGSEVSLAVEAAKDLEKQGKSVRVVSMPNWNAFEQQSEEYKESVIPSSVTKRVAIE 612          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STAEQ (Transketolase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=tkt PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.315e-52
Identity = 106/223 (47.53%), Postives = 149/223 (66.82%), Query Frame = 1
Query:   91 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL---AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            D+ KDTPE +NV FGVRE  MGA  NG+A H  GL PY ATFFVF+DY++ A+R+S++      ++ THDSI +GEDGPTH+PIE LA  RA+PN+ ++RPADGNET  A++VA+ + + P+ L L+RQ LP L     T  +GV KGAYI+ +     + + +L+ +GS             + GK VRV+S  +W  F++QS  YKES+LP+ V+ R++IE
Sbjct:  393 DYNKDTPEGKNVWFGVREFAMGAAINGMAAHG-GLHPYAATFFVFSDYLKPALRLSSIMGLNSTFIFTHDSIAVGEDGPTHEPIEQLAGLRAIPNMNVIRPADGNETRVAWEVALESEQTPTSLVLTRQNLPTLDVDKQTVENGVRKGAYIVFETE--QQLEYLLLASGSEVNLAVEAAKELEQQGKGVRVISMPNWYAFEQQSSEYKESILPSDVTKRIAIE 612          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STRPN (Probable transketolase OS=Streptococcus pneumoniae GN=tkt PE=3 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.243e-52
Identity = 112/229 (48.91%), Postives = 145/229 (63.32%), Query Frame = 1
Query:   64 HMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            +MT +K  G         RN++FGVRE  MG I NG+ALH  GL  Y  TFFVF+DY++AA+R+SAL    V YV THDSI +GEDGPTH+P+EHLA  RAMPN+ + RPAD  ET  A+ +AV + K P+ L L+RQ L    GT  D V KGAY++ +N++    D ILI TGS               G+ +RVVS  S ++FD+Q  AYKE +LP AV  RV++E
Sbjct:  382 NMTYIKTDGLQDDANRLNRNIQFGVREFAMGTILNGMALHG-GLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPVEHLAGLRAMPNLNVFRPADARETQAAWYLAVTSEKTPTALVLTRQNLTVEDGTDFDKVAKGAYVVYENAADF--DTILIATGSEVNLAVSAAKELASQGEKIRVVSMPSTDVFDKQDAAYKEEILPNAVRRRVAVE 607          
The following BLAST results are available for this feature:
BLAST of CX290272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
TKT_STRP61.553e-5352.17Transketolase OS=Streptococcus pyogenes serotype M... [more]
TKT_BACSU7.708e-5350.43Transketolase OS=Bacillus subtilis GN=tkt PE=3 SV=... [more]
TKT_STAAW1.007e-5247.98Transketolase OS=Staphylococcus aureus (strain MW2... [more]
TKT_STAAS1.007e-5247.98Transketolase OS=Staphylococcus aureus (strain MSS... [more]
TKT_STAAR1.007e-5247.98Transketolase OS=Staphylococcus aureus (strain MRS... [more]
TKT_STAAN1.007e-5247.98Transketolase OS=Staphylococcus aureus (strain N31... [more]
TKT_STAAM1.007e-5247.98Transketolase OS=Staphylococcus aureus (strain Mu5... [more]
TKT_STAAC1.007e-5247.98Transketolase OS=Staphylococcus aureus (strain COL... [more]
TKT_STAEQ1.315e-5247.53Transketolase OS=Staphylococcus epidermidis (strai... [more]
TKT_STRPN2.243e-5248.91Probable transketolase OS=Streptococcus pneumoniae... [more]

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Properties
Property NameValue
Genbank descriptionC02022D07SK IF1 Citrus clementina cDNA clone C02022D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290272 ID=CX290272; Name=CX290272; organism=Citrus clementina; type=EST; length=751bp
GAATTCGGCACGAGGAAAGACTCTCCCTGGTCTTCTTGGTGGTAGTGCAG
ACCTTGCTTCTTCCACATGACCCTACTAAAAATGTTTGGGGACTTCCAAA
AGGACACCCCAGAGGAACGTAATGTTCGGTTTGGTGTTAGGGAGCATGGG
ATGGGAGCCATCTGCAATGGCATTGCCCTGCACAGCCCTGGCCTAATTCC
TTACTGTGCTACTTTCTTTGTTTTCACCGACTACATGAGAGCTGCTATAA
GGATATCTGCTCTGTGTGAAGCTGGCGTTATCTATGTTATGACCCATGAT
TCTATTGGTCTTGGAGAAGATGGACCTACCCATCAGCCAATTGAACACTT
GGCAAGTTTCCGTGCCATGCCCAACATTTTGATGCTCCGTCCGGCTGACG
GTAATGAAACTGCTGGTGCATACAAGGTTGCTGTTGCCAACAGGAAGAGA
CCGTCCATCCTTGCCCTTTCCCGGCAAAAGCTTCCCCACCTTGCTGGAAC
TTCCATTGATGGTGTTGAAAAGGGTGCCTACATAATTTCGGACAATTCTT
CTGGTAACAAACCTGATGTCATTTTGATTGGAACTGGTTCTGAATTGGAA
ATTGCCGCCAAAGCAGCTGAGGAACTTAGAAAGGGAGGAAAGGCTGTAAG
AGTTGTCTCCTTTGTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCT
ACAAGGAAAGTGTGCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAA
G
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