CX290272

Overview
NameCX290272
Unique NameCX290272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_STAES (Transketolase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=tkt PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.243e-52
Identity = 106/223 (47.53%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   91 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL---AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            D+ KDTPE +NV FGVRE  MGA  NG+A H  GL PY ATFFVF+DY++ A+R+S++      ++ THDSI +GEDGPTH+PIE LA  RA+PN+ ++RPADGNET  A++VA+ +   P+ L L+RQ LP L     T  +GV KGAYI+ +     + + +L+ +GS             + GK VRV+S  +W  F++QS  YKES+LP+ V+ R++IE
Sbjct:  393 DYNKDTPEGKNVWFGVREFAMGAAINGMAAHG-GLHPYAATFFVFSDYLKPALRLSSIMGLNSTFIFTHDSIAVGEDGPTHEPIEQLAGLRAIPNMNVIRPADGNETRVAWEVALESEHTPTSLVLTRQNLPTLDVDKQTVENGVRKGAYIVFETE--QQLEYLLLASGSEVNLAVEAAKELEQQGKGVRVISMPNWYAFEQQSSEYKESILPSDVTKRIAIE 612          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_MYCTU (Transketolase OS=Mycobacterium tuberculosis GN=tkt PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 9.936e-51
Identity = 107/216 (49.54%), Postives = 136/216 (62.96%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR--KRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSS---GNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            R + FGVREH MGAI +GI LH P    Y  TF  F+DYMR A+R++AL +   IYV THDSIGLGEDGPTHQPIEHL++ RA+P + ++RPAD NETA A++  +A R    P  L L+RQ +P L GT  +GV +G Y++SD      G +PDVILI TGS                   RVVS    E F+ Q   Y+++VLP  VSARV++E
Sbjct:  433 RTLHFGVREHAMGAILSGIVLHGPTRA-YGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVE 647          

HSP 2 Score: 27.335 bits (59), Expect = 9.936e-51
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:    5 SARGKTLPGLLGGSADLASS 64
            SA G  LP L GGSADLA S
Sbjct:  386 SALGPKLPELWGGSADLAGS 405          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_MYCBO (Transketolase OS=Mycobacterium bovis GN=tkt PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 9.936e-51
Identity = 107/216 (49.54%), Postives = 136/216 (62.96%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANR--KRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSS---GNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            R + FGVREH MGAI +GI LH P    Y  TF  F+DYMR A+R++AL +   IYV THDSIGLGEDGPTHQPIEHL++ RA+P + ++RPAD NETA A++  +A R    P  L L+RQ +P L GT  +GV +G Y++SD      G +PDVILI TGS                   RVVS    E F+ Q   Y+++VLP  VSARV++E
Sbjct:  433 RTLHFGVREHAMGAILSGIVLHGPTRA-YGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVPVLDGTDAEGVARGGYVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVE 647          

HSP 2 Score: 27.335 bits (59), Expect = 9.936e-51
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:    5 SARGKTLPGLLGGSADLASS 64
            SA G  LP L GGSADLA S
Sbjct:  386 SALGPKLPELWGGSADLAGS 405          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_MYCLE (Transketolase OS=Mycobacterium leprae GN=tkt PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.688e-50
Identity = 105/215 (48.84%), Postives = 138/215 (64.19%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVAN--RKRPSILALSRQKLPHLAGTSIDGVEKGAYIISD--NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            R + FGVREH MGAI +GI LH P    Y  TF  F+DYMR ++R+++L +   IYV THDS+GLGEDGPTHQPIEHLA+ RA+P + ++RPAD NETA A++  +A      P  L L+RQ +P L GT+ +GV +G Y++ D  +S   +PDVILI TGS                  VRVVS    E F+ Q   Y++SVLP +VSARV++E
Sbjct:  433 RTLHFGVREHAMGAILSGIVLHGPTRA-YGGTFLQFSDYMRPSVRLASLMDIDTIYVWTHDSVGLGEDGPTHQPIEHLAALRAIPRLSVVRPADANETAYAWRTILARGANSGPVGLILTRQSVPVLEGTNTEGVARGGYVLGDGGSSEAKEPDVILIATGSEVQLAVAAQKLLADKDIIVRVVSMPCVEWFESQPYEYRDSVLPPSVSARVAVE 646          

HSP 2 Score: 26.9498 bits (58), Expect = 1.688e-50
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:    5 SARGKTLPGLLGGSADLASS 64
            SA G  LP L GGSADLA S
Sbjct:  386 SAIGPKLPELWGGSADLAGS 405          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT1_KLULA (Transketolase OS=Kluyveromyces lactis GN=TKL1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.060e-49
Identity = 100/204 (49.02%), Postives = 127/204 (62.25%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAV 729
            R +R+GVREHGMGAI NGI+       PY  TF  F  Y   A+R+SAL    VI+V THDSIGLGEDGPTHQPIE LA FRA+PN+ + RPADGNE   AYKVA+ N+  P+I+ALSRQ LP L G+S++   KG YI+ D    ++PD+ ++ TGS             +     R+VS   +  F +QS  Y+ SV P  V
Sbjct:  409 RYIRYGVREHGMGAIMNGISAFGANYRPYGGTFLNFVSYASGAVRLSALSGHPVIWVATHDSIGLGEDGPTHQPIETLAHFRAIPNLQVWRPADGNEVTAAYKVALTNKHTPAIIALSRQNLPQLQGSSVEKAVKGGYILQD---VDQPDLAIVSTGSEVGIAVEAAKVLAEKNIKARIVSLPDFHSFGQQSKEYQLSVFPDGV 609          

HSP 2 Score: 25.7942 bits (55), Expect = 4.060e-49
Identity = 12/15 (80.00%), Postives = 12/15 (80.00%), Query Frame = 2
Query:   20 TLPGLLGGSADLASS 64
            TLP LLGGSADL  S
Sbjct:  371 TLPELLGGSADLTPS 385          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT2_ECOLI (Transketolase 2 OS=Escherichia coli (strain K12) GN=tktB PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.172e-48
Identity = 104/219 (47.49%), Postives = 133/219 (60.73%), Query Frame = 1
Query:  100 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            K+ P    + +GVRE GM AI NGIA H  G +PY ATF +F +Y R A R++AL +A  I V THDSIGLGEDGPTHQ +E LAS R  PN    RP D  E A  +K+AV     P+ L LSRQ L  +  T   +  + +G Y++ D  SG KPD+ILI TGS               G+ VRVVS  S ++FD Q + Y+ESVLP+ V+ARV++E
Sbjct:  396 KEDPAGNYIHYGVREFGMTAIANGIAHHG-GFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQAVEQLASLRLTPNFSTWRPCDQVEAAVGWKLAVERHNGPTALILSRQNLAQVERTPDQVKEIARGGYVLKD--SGGKPDIILIATGSEMEITLQAAEKLAGEGRNVRVVSLPSTDIFDAQDEEYRESVLPSNVAARVAVE 611          

HSP 2 Score: 28.1054 bits (61), Expect = 1.172e-48
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 2
Query:    5 SARGKTLPGLLGGSADLASS 64
            +A G  LP LLGGSADLA S
Sbjct:  365 NAYGPMLPELLGGSADLAPS 384          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_SCHPO (Probable transketolase OS=Schizosaccharomyces pombe GN=SPBC2G5.05 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.990e-48
Identity = 102/212 (48.11%), Postives = 137/212 (64.62%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXR-KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            R +R+G+REHGM  I NG+A++ P +IPY  TF  F  Y   A+R++AL  + VIYV THDSIGLGEDGPTHQPIE  A FRAMPNI   RPADGNET+ AY  A+ +   PSILAL+RQ LP L  ++I+   KG Y++ +N    + D+ L+GTGS              +     RVVS   WE+F++Q ++Y+ SV+P  + A +S+E
Sbjct:  414 RYIRYGIREHGMAGIMNGLAVYGP-IIPYGGTFLNFVSYAAGAVRMAALNNSRVIYVATHDSIGLGEDGPTHQPIETFAHFRAMPNINCWRPADGNETSAAYYSALTSDSTPSILALTRQNLPQLENSTIENALKGGYVMLEN---KEADITLVGTGSEVSLCIDTVKTLETEYNLKARVVSLPCWEVFEQQPESYRLSVIPDGIPA-MSVE 620          

HSP 2 Score: 22.7126 bits (47), Expect = 1.990e-48
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2
Query:   23 LPGLLGGSADLASS 64
            LP L+GGSADL  S
Sbjct:  377 LPELVGGSADLTPS 390          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT1_CANAL (Transketolase 1 OS=Candida albicans GN=TKT1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 9.757e-48
Identity = 100/202 (49.50%), Postives = 124/202 (61.39%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAV 729
            +R+GVREHGMGAI NGIA        Y  TF  F  Y   A+R+SAL    VI+V THDSIGLGEDGPTHQPIE LA FRA+PN+ + RPADGNE + AY  A+ +   PS++AL+RQ LP L G+SI+   KG Y +      + PDVI++ +GS             K G    VVS   +  FD+QSD Y+ SVLP  V
Sbjct:  409 IRYGVREHGMGAIMNGIAAFGANYKNYGGTFLNFVSYAAGALRLSALSHHPVIWVATHDSIGLGEDGPTHQPIETLAHFRAIPNLSVWRPADGNEVSAAYAAAIESTSHPSVIALTRQNLPQLEGSSIENALKGGYTLVKK---DNPDVIIVSSGSEVSISVAASEELAKQGVKANVVSLPDFFTFDQQSDEYRLSVLPDGV 607          

HSP 2 Score: 23.0978 bits (48), Expect = 9.757e-48
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 2
Query:    2 NSARGKTLPGLLGGSADLASS 64
            N+  GK +P  +GGSADL  S
Sbjct:  364 NALHGK-IPEFIGGSADLTGS 383          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT2_VIBVY (Transketolase 2 OS=Vibrio vulnificus (strain YJ016) GN=tkt2 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 9.759e-48
Identity = 103/211 (48.82%), Postives = 134/211 (63.51%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            + +GVRE GM AI NGIALH  G +PY ATF +F +Y R A+R++AL +   I V THDSIGLGEDGPTHQP+E +AS R  PN+   RP D  E+A A+K+A+  +  PS L  SRQ L     T+  +  + KG YI+ D  S  KP++ILI TGS               GK VRVVS  + + FD+Q  AY+ESVLP+ V+AR++IE
Sbjct:  404 IHYGVREFGMTAIMNGIALHG-GFVPYGATFLMFMEYARNAMRMAALMKVQNIQVYTHDSIGLGEDGPTHQPVEQIASLRLTPNMSTWRPCDQVESAVAWKLAIERKDGPSALIFSRQNLAQQERTAEQVADIAKGGYILKD--SDGKPELILIATGSEVELAVKAAEQLTAEGKKVRVVSMPATDAFDKQDAAYRESVLPSDVTARIAIE 611          

HSP 2 Score: 27.335 bits (59), Expect = 9.759e-48
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 2
Query:    8 ARGKTLPGLLGGSADLASS 64
            A GK LP  +GGSADLA S
Sbjct:  365 AFGKMLPEFMGGSADLAPS 383          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT2_VIBCH (Transketolase 2 OS=Vibrio cholerae GN=tkt2 PE=3 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 9.759e-48
Identity = 102/211 (48.34%), Postives = 133/211 (63.03%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPH--LAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            + +GVRE GM AI NGIALH  G +PY ATF +F +Y R A+R++AL +   I V THDSIGLGEDGPTHQP+E +AS R  PN+   RP D  E+A A+K+A+  +  PS L  SRQ L     +   +  + KG YI+ D     +P++ILI TGS               GKAVRVVS  S + FD+Q  AY+E+VLPAAV+ R++IE
Sbjct:  405 IHYGVREFGMTAIINGIALHG-GFVPYGATFLMFMEYARNAMRMAALMKVQNIQVYTHDSIGLGEDGPTHQPVEQIASLRMTPNMSTWRPCDQVESAVAWKLAIERKDAPSALIFSRQNLAQQPRSAEQVANIAKGGYILKD--CAGQPELILIATGSEVELAVAAYEQLSAEGKAVRVVSMPSTDAFDKQDAAYREAVLPAAVTKRIAIE 612          

HSP 2 Score: 27.335 bits (59), Expect = 9.759e-48
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 2
Query:    8 ARGKTLPGLLGGSADLASS 64
            A GK LP  +GGSADLA S
Sbjct:  366 AFGKLLPEFMGGSADLAPS 384          
The following BLAST results are available for this feature:
BLAST of CX290272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
TKT_STAES2.243e-5247.53Transketolase OS=Staphylococcus epidermidis (strai... [more]
TKT_MYCTU9.936e-5149.54Transketolase OS=Mycobacterium tuberculosis GN=tkt... [more]
TKT_MYCBO9.936e-5149.54Transketolase OS=Mycobacterium bovis GN=tkt PE=3 S... [more]
TKT_MYCLE1.688e-5048.84Transketolase OS=Mycobacterium leprae GN=tkt PE=3 ... [more]
TKT1_KLULA4.060e-4949.02Transketolase OS=Kluyveromyces lactis GN=TKL1 PE=3... [more]
TKT2_ECOLI1.172e-4847.49Transketolase 2 OS=Escherichia coli (strain K12) G... [more]
TKT_SCHPO1.990e-4848.11Probable transketolase OS=Schizosaccharomyces pomb... [more]
TKT1_CANAL9.757e-4849.50Transketolase 1 OS=Candida albicans GN=TKT1 PE=3 S... [more]
TKT2_VIBVY9.759e-4848.82Transketolase 2 OS=Vibrio vulnificus (strain YJ016... [more]
TKT2_VIBCH9.759e-4848.34Transketolase 2 OS=Vibrio cholerae GN=tkt2 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC02022D07SK IF1 Citrus clementina cDNA clone C02022D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290272 ID=CX290272; Name=CX290272; organism=Citrus clementina; type=EST; length=751bp
GAATTCGGCACGAGGAAAGACTCTCCCTGGTCTTCTTGGTGGTAGTGCAG
ACCTTGCTTCTTCCACATGACCCTACTAAAAATGTTTGGGGACTTCCAAA
AGGACACCCCAGAGGAACGTAATGTTCGGTTTGGTGTTAGGGAGCATGGG
ATGGGAGCCATCTGCAATGGCATTGCCCTGCACAGCCCTGGCCTAATTCC
TTACTGTGCTACTTTCTTTGTTTTCACCGACTACATGAGAGCTGCTATAA
GGATATCTGCTCTGTGTGAAGCTGGCGTTATCTATGTTATGACCCATGAT
TCTATTGGTCTTGGAGAAGATGGACCTACCCATCAGCCAATTGAACACTT
GGCAAGTTTCCGTGCCATGCCCAACATTTTGATGCTCCGTCCGGCTGACG
GTAATGAAACTGCTGGTGCATACAAGGTTGCTGTTGCCAACAGGAAGAGA
CCGTCCATCCTTGCCCTTTCCCGGCAAAAGCTTCCCCACCTTGCTGGAAC
TTCCATTGATGGTGTTGAAAAGGGTGCCTACATAATTTCGGACAATTCTT
CTGGTAACAAACCTGATGTCATTTTGATTGGAACTGGTTCTGAATTGGAA
ATTGCCGCCAAAGCAGCTGAGGAACTTAGAAAGGGAGGAAAGGCTGTAAG
AGTTGTCTCCTTTGTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCT
ACAAGGAAAGTGTGCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAA
G
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