CX290272

Overview
NameCX290272
Unique NameCX290272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_PICST (Transketolase OS=Pichia stipitis GN=TKT PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.097e-46
Identity = 102/204 (50.00%), Postives = 122/204 (59.80%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAV 729
            R +R+GVREH MGAI NGIA        Y  TF  F  Y   A+R+SAL E  + +V THDSIGLGEDGPTHQPIE LA FRA PNI + RPADGNET+ AYK A+ +   P ILAL+RQ LP L G+SI+   KG Y +      +K D+I++ TGS               G    VVS      FD+QS+ YK SVLP  V
Sbjct:  407 RYIRYGVREHAMGAIMNGIAAFGANYKNYGGTFLNFVSYAAGAVRLSALSEFPITWVATHDSIGLGEDGPTHQPIETLAHFRATPNISVWRPADGNETSAAYKSAIESTHTPHILALTRQNLPQLEGSSIEKASKGGYTLVQQ---DKADIIIVATGSEVSLAVDALKVLEGQGIKAGVVSLPDQLTFDKQSEEYKLSVLPDGV 607          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT2_YEAST (Transketolase 2 OS=Saccharomyces cerevisiae GN=TKL2 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 6.759e-46
Identity = 101/205 (49.27%), Postives = 126/205 (61.46%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGK-AVRVVSFVSWELFDEQSDAYKESVLPAAV 729
            R +R+GVREHGMGAI NGI+       PY  TF  F  Y   A+R++AL    VI+V THDSIGLGEDGPTHQPIE LA  RA+PN+ + RPADGNET+ AY  A+ + + PS++ALSRQ LP L  +S +   KG Y+I D  +   PD+IL+ TGS                K   RVVS   +  FD QS+ Y+ SVLP  V
Sbjct:  410 RYIRYGVREHGMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLAALSGNPVIWVATHDSIGLGEDGPTHQPIETLAHLRAIPNMHVWRPADGNETSAAYYSAIKSGRTPSVVALSRQNLPQLEHSSFEKALKGGYVIHDVEN---PDIILVSTGSEVSISIDAAKKLYDTKKIKARVVSLPDFYTFDRQSEEYRFSVLPDGV 611          

HSP 2 Score: 23.483 bits (49), Expect = 6.759e-46
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 2
Query:   17 KTLPGLLGGSADLASS 64
            + LP L+GGSADL  S
Sbjct:  371 QVLPELIGGSADLTPS 386          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT2_VIBPA (Transketolase 2 OS=Vibrio parahaemolyticus GN=tkt2 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.950e-45
Identity = 100/211 (47.39%), Postives = 132/211 (62.56%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPH--LAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            + +GVRE GM AI NGIALH  G +PY ATF +F +Y R A+R++AL +   I V THDSIGLGEDGPTHQP+E +AS R  PN+   RP D  E+A A+K+A+  +  P+ L  SRQ L     +   +  + KG YI+ D  S  KP++ILI TGS               GK VRVVS  S + FD+Q   Y+E+VLP+ V+AR++IE
Sbjct:  404 IHYGVREFGMTAIMNGIALHG-GFVPYGATFLMFMEYARNAMRMAALMKIQNIQVYTHDSIGLGEDGPTHQPVEQIASLRLTPNMNTWRPCDQVESAVAWKLAIERKDAPTALIFSRQNLAQQPRSAEQVADIAKGGYILKD--SEGKPELILIATGSEVELAVKAAEQLTAEGKKVRVVSMPSTDAFDKQDADYREAVLPSDVTARIAIE 611          

HSP 2 Score: 25.0238 bits (53), Expect = 1.950e-45
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 2
Query:    8 ARGKTLPGLLGGSADLASS 64
            A G  LP  +GGSADLA S
Sbjct:  365 AFGALLPEFMGGSADLAPS 383          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_PHYPO (Transketolase OS=Physarum polycephalum GN=tkt PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 102/226 (45.13%), Postives = 140/226 (61.95%), Query Frame = 1
Query:   88 GDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLI-PYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSI----DGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            GD+       RN++FG+REH MGA+ NG A H  G+  P  ATF VF+DY+R +IR++AL    VIY+ THDS+ +GEDGPTHQP+E ++S R +PN+ ++RP D  ETAGA+  A++    P++LAL RQ LP+L+   +    +GV KG YI+   +   K  VI+I TGS            ++ G  VRVVS  S   FD+Q   YKE VLP++   RV IE
Sbjct:  393 GDYTPKNTGGRNIKFGIREHAMGAMLNGFAYH--GIFRPSGATFLVFSDYLRPSIRLAALSHLPVIYIFTHDSVAVGEDGPTHQPVETVSSLRLIPNLDVIRPGDHEETAGAFVAALSRTTGPTLLALCRQNLPNLSQFDVNARREGVLKGGYILQKETGALK--VIVISTGS---ELNVAVEAAKRLGDGVRVVSMPSTYRFDQQPAEYKEEVLPSSCKKRVVIE 611          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_RHOCA (Transketolase OS=Rhodobacter capsulatus GN=tktA PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 103/222 (46.40%), Postives = 136/222 (61.26%), Query Frame = 1
Query:   91 DFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL--AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            DF     + R +R+G+REH M A  NG+ LH  G+ PY  TFF FTDY R A+R+S+L     +YVMTHDSIGLGEDGPTHQP+EHLA  RA PN    RPAD  ETA A+++A+++ + PS+LALSRQ LP L     + +   KGAY+I++  +  K   IL+ TGS            +      RVVS    ELF  Q +AY++ +LPA    RV++E
Sbjct:  398 DFMPGNHKGRYMRYGIREHAMAAAMNGMWLHG-GVRPYGGTFFCFTDYARGAMRLSSLMGVPTVYVMTHDSIGLGEDGPTHQPVEHLAICRATPNTWTFRPADVIETAEAWELALSSERTPSVLALSRQNLPTLRTKHEAKNLTAKGAYVIAE--AEGKRQAILMATGSEVEIALKARALLQAEAIGTRVVSMPCMELFAAQDEAYRKRILPAG-GVRVAVE 615          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT2_PASMU (Transketolase 2 OS=Pasteurella multocida GN=tktB PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.552e-45
Identity = 97/212 (45.75%), Postives = 132/212 (62.26%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISD-NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            + +GVRE GM AI NGIALH  G IPY ATF +F +Y   A+R++AL +   ++V THDSIGLGEDGPTHQP+E  ++ R +PN+   RP D  E+A A+K AV  ++ PS L  +RQ L  +  T+  +  V +G Y++     + N PD+ILI TGS               G  VRVVS  S  +FD+Q  AY+ESVLP+ ++ RV+IE
Sbjct:  407 INYGVREFGMSAIMNGIALHG-GFIPYGATFLMFMEYAHNAVRMAALMKQRSLFVYTHDSIGLGEDGPTHQPVEQTSALRLIPNLETWRPCDQVESAVAWKAAVERKEGPSALIFTRQNLAQMDRTAEQLANVARGGYVLRHCCENQNCPDLILIATGSEVELAMKAADVLDAEGVKVRVVSMPSTNVFDKQDAAYRESVLPSHITKRVAIE 617          

HSP 2 Score: 28.1054 bits (61), Expect = 9.552e-45
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 2
Query:    8 ARGKTLPGLLGGSADLASS 64
            A  K LP  LGGSADLASS
Sbjct:  367 AYAKLLPEFLGGSADLASS 385          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT1_PASMU (Transketolase 1 OS=Pasteurella multocida GN=tktA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.552e-45
Identity = 97/212 (45.75%), Postives = 132/212 (62.26%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISD-NSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            + +GVRE GM AI NGIALH  G IPY ATF +F +Y   A+R++AL +   ++V THDSIGLGEDGPTHQP+E  ++ R +PN+   RP D  E+A A+K AV  ++ PS L  +RQ L  +  T+  +  V +G Y++     + N PD+ILI TGS               G  VRVVS  S  +FD+Q  AY+ESVLP+ ++ RV+IE
Sbjct:  407 INYGVREFGMSAIMNGIALHG-GFIPYGATFLMFMEYAHNAVRMAALMKQRSLFVYTHDSIGLGEDGPTHQPVEQTSALRLIPNLETWRPCDQVESAVAWKAAVERKEGPSALIFTRQNLAQMDRTAEQLANVARGGYVLRHCCENQNCPDLILIATGSEVELAMKAADVLDAEGVKVRVVSMPSTNVFDKQDAAYRESVLPSHITKRVAIE 617          

HSP 2 Score: 28.1054 bits (61), Expect = 9.552e-45
Identity = 14/19 (73.68%), Postives = 14/19 (73.68%), Query Frame = 2
Query:    8 ARGKTLPGLLGGSADLASS 64
            A  K LP  LGGSADLASS
Sbjct:  367 AYAKLLPEFLGGSADLASS 385          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_BUCBP (Transketolase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=tkt PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.245e-44
Identity = 98/211 (46.45%), Postives = 131/211 (62.09%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHL--AGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            V +GVRE GM AI NGIA H  G IPY ATF  F DY R+A+R+SAL +   I++ +HDSIGLGEDGPTHQPIE L++ R +PN+ + RP D  ETA A+K A+  +  P+ L LSRQ L  +  +   I+ + +G YI+  N++   P VI++ TGS             K G  VRVVS  S  +FD+Q + YKE + P  +  RV+IE
Sbjct:  405 VHYGVREFGMTAISNGIA-HYGGFIPYVATFLAFMDYARSAVRMSALMKTQNIFIYSHDSIGLGEDGPTHQPIEQLSALRFIPNVNVWRPCDQLETAIAWKNAIERKDGPTALILSRQILCQIDRSQEQINDIYRGGYIV--NTTVRSPKVIIVATGSEVKIALDVSNILFKKGILVRVVSMPSTNVFDQQDNDYKEFIFPRCLVHRVAIE 612          

HSP 2 Score: 29.261 bits (64), Expect = 1.245e-44
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 2
Query:   14 GKTLPGLLGGSADLASS 64
            GK+LP L+GGSADLA S
Sbjct:  369 GKSLPELIGGSADLAPS 385          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_SINMW (Transketolase OS=Sinorhizobium medicae (strain WSM419) GN=cbbT PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.721e-44
Identity = 106/216 (49.07%), Postives = 137/216 (63.43%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEK----GAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXR-KGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            R + +G+REHGM A  NGIALH  G IPY  TF VF+DY R A+R+SAL    VIYV+THDSIGLGEDGPTHQP+EHLA  RA PN+ + RPAD  ETA  +++A+  +  PS+LALSRQ LP L  T  +G E     GAY++ + + GN+ D+ ++ TGS            + + G A  VVS   WE F+ Q  AY+  VL  A   R++IE
Sbjct:  407 RYLHYGIREHGMAAAMNGIALHG-GFIPYGGTFLVFSDYARGAMRLSALMGLPVIYVLTHDSIGLGEDGPTHQPVEHLAMLRATPNLNVFRPADIIETAECWEIALGEKNTPSVLALSRQALPMLRRT--EGNENQSALGAYVLRE-ARGNR-DITILATGSEVEIAVAAAERLQAEEGIAAAVVSMPCWEKFEVQDLAYRRKVLGDA--PRIAIE 615          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT1_ECOLI (Transketolase 1 OS=Escherichia coli (strain K12) GN=tktA PE=1 SV=5)

HSP 1 Score: 173.711 bits (439), Expect = 4.678e-44
Identity = 95/211 (45.02%), Postives = 128/211 (60.66%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGT--SIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            + +GVRE GM AI NGI+LH  G +PY +TF +F +Y R A+R++AL +   + V THDSIGLGEDGPTHQP+E +AS R  PN+   RP D  E+A A+K  V  +  P+ L LSRQ L     T   +  + +G Y++ D     +P++I I TGS               G   RVVS  S + FD+Q  AY+ESVLP AV+ARV++E
Sbjct:  405 IHYGVREFGMTAIANGISLHG-GFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKD--CAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVE 612          

HSP 2 Score: 25.7942 bits (55), Expect = 4.678e-44
Identity = 13/19 (68.42%), Postives = 13/19 (68.42%), Query Frame = 2
Query:    8 ARGKTLPGLLGGSADLASS 64
            A G  LP  LGGSADLA S
Sbjct:  367 AFGPLLPEFLGGSADLAPS 385          
The following BLAST results are available for this feature:
BLAST of CX290272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
TKT_PICST4.097e-4650.00Transketolase OS=Pichia stipitis GN=TKT PE=3 SV=2[more]
TKT2_YEAST6.759e-4649.27Transketolase 2 OS=Saccharomyces cerevisiae GN=TKL... [more]
TKT2_VIBPA1.950e-4547.39Transketolase 2 OS=Vibrio parahaemolyticus GN=tkt2... [more]
TKT_PHYPO4.529e-4545.13Transketolase OS=Physarum polycephalum GN=tkt PE=2... [more]
TKT_RHOCA7.726e-4546.40Transketolase OS=Rhodobacter capsulatus GN=tktA PE... [more]
TKT2_PASMU9.552e-4545.75Transketolase 2 OS=Pasteurella multocida GN=tktB P... [more]
TKT1_PASMU9.552e-4545.75Transketolase 1 OS=Pasteurella multocida GN=tktA P... [more]
TKT_BUCBP1.245e-4446.45Transketolase OS=Buchnera aphidicola subsp. Baizon... [more]
TKT_SINMW1.721e-4449.07Transketolase OS=Sinorhizobium medicae (strain WSM... [more]
TKT1_ECOLI4.678e-4445.02Transketolase 1 OS=Escherichia coli (strain K12) G... [more]

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Properties
Property NameValue
Genbank descriptionC02022D07SK IF1 Citrus clementina cDNA clone C02022D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290272 ID=CX290272; Name=CX290272; organism=Citrus clementina; type=EST; length=751bp
GAATTCGGCACGAGGAAAGACTCTCCCTGGTCTTCTTGGTGGTAGTGCAG
ACCTTGCTTCTTCCACATGACCCTACTAAAAATGTTTGGGGACTTCCAAA
AGGACACCCCAGAGGAACGTAATGTTCGGTTTGGTGTTAGGGAGCATGGG
ATGGGAGCCATCTGCAATGGCATTGCCCTGCACAGCCCTGGCCTAATTCC
TTACTGTGCTACTTTCTTTGTTTTCACCGACTACATGAGAGCTGCTATAA
GGATATCTGCTCTGTGTGAAGCTGGCGTTATCTATGTTATGACCCATGAT
TCTATTGGTCTTGGAGAAGATGGACCTACCCATCAGCCAATTGAACACTT
GGCAAGTTTCCGTGCCATGCCCAACATTTTGATGCTCCGTCCGGCTGACG
GTAATGAAACTGCTGGTGCATACAAGGTTGCTGTTGCCAACAGGAAGAGA
CCGTCCATCCTTGCCCTTTCCCGGCAAAAGCTTCCCCACCTTGCTGGAAC
TTCCATTGATGGTGTTGAAAAGGGTGCCTACATAATTTCGGACAATTCTT
CTGGTAACAAACCTGATGTCATTTTGATTGGAACTGGTTCTGAATTGGAA
ATTGCCGCCAAAGCAGCTGAGGAACTTAGAAAGGGAGGAAAGGCTGTAAG
AGTTGTCTCCTTTGTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCT
ACAAGGAAAGTGTGCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAA
G
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