CX290272

Overview
NameCX290272
Unique NameCX290272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_RHIME (Transketolase OS=Rhizobium meliloti GN=cbbT PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 105/216 (48.61%), Postives = 134/216 (62.04%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEK----GAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGK-AVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            R + +G+REHGM A  NGIALH  G IPY  TF VF+DY R A+R+SAL    VIYV+THDSIGLGEDGPTHQP+EHLA  RA PN+ + RPAD  ETA  +++A+  +  PS+ ALSRQ LP L  T  DG E     GAY++ + + G++ D+ L+ TGS            +   + A  VVS   WE F+ Q  AY   VL  A   R++IE
Sbjct:  407 RYLHYGIREHGMAAAMNGIALHG-GFIPYGGTFLVFSDYARGAMRLSALMGLPVIYVLTHDSIGLGEDGPTHQPVEHLAMLRATPNLNVFRPADIIETAECWEIAIGEKNTPSVFALSRQALPMLRRT--DGNENLSALGAYVLRE-ARGDR-DITLLATGSEVEIAVAAAERLQAEERIAAAVVSMPCWEKFEAQDAAYHRQVLGDA--PRIAIE 615          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_BUCAI (Transketolase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=tkt PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.985e-43
Identity = 101/219 (46.12%), Postives = 130/219 (59.36%), Query Frame = 1
Query:  100 KDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTS--IDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            KD      + +GVRE GM AI NGI+ H  G IPY ATF +F +Y R A+R++AL     I+V THDSIGLGEDGPTHQP+E L+S R  PNI + RP+D  ETA A+K A+     P+ L LSRQ L     +S  ++ +  GAYI+ D  S  + D+I I TGS               G +VRVVS     +FD Q  +YKE VLP  V+ RV++E
Sbjct:  397 KDNLSGNYIHYGVREFGMTAIANGISHHG-GFIPYTATFLMFVEYARNAVRMAALMCTKHIFVYTHDSIGLGEDGPTHQPVEQLSSLRITPNIDVWRPSDQVETAVAWKKAIEKTSGPTALILSRQNLDQFERSSEQLENISYGAYILYD--SKKRLDIIFISTGSELNVTLIAAKKLASLGYSVRVVSMPCTSVFDRQDASYKEFVLPTYVAKRVAVE 612          

HSP 2 Score: 23.483 bits (49), Expect = 2.985e-43
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:   23 LPGLLGGSADLASS 64
            LP L+GGSADL+ S
Sbjct:  372 LPELIGGSADLSPS 385          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKTP_RALEH (Transketolase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbTP PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 5.068e-43
Identity = 100/211 (47.39%), Postives = 126/211 (59.72%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSID--GVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            V +GVRE GM A+ NGIALH  GLIPY  TF  F+DY R AIR++AL    V++V+THDSIGLGEDGPTHQP+EH AS R +PN  + RP DG ETA A+  A+     P+ L LSRQ L      +     + +G Y++ D  +   P V+LI TGS               G A RVVS    ELF  Q  AY++SVLP  +  R+S+E
Sbjct:  411 VSYGVREFGMAAVMNGIALHG-GLIPYGGTFMTFSDYSRNAIRMAALMRLRVVHVLTHDSIGLGEDGPTHQPVEHAASLRLIPNNQVWRPCDGAETAYAWLAALQRENGPTCLVLSRQALMPFERDAAQRADIARGGYVLRDVPA---PRVVLIATGSEVEIAARAALDLADAGIAARVVSMPCVELFYAQDAAYRDSVLPPGL-PRISVE 616          

HSP 2 Score: 24.2534 bits (51), Expect = 5.068e-43
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2
Query:   23 LPGLLGGSADLASS 64
            LP LLGGSADL  S
Sbjct:  378 LPELLGGSADLTGS 391          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_BUCAP (Transketolase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tkt PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 8.606e-43
Identity = 100/212 (47.17%), Postives = 130/212 (61.32%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GTSIDGVEKGAYIISDNSSGNKP-DVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            + +GVRE GM AI NGI+ H  G IPY +TF +F +Y R A+R++AL     I+V THDSIGLGEDGPTHQPIE LA+ R  PNI + RP+D  ETA A+K A+  +  P+ L LSRQ L   +     I  +  GAYI+ D+    KP D+I I TGS               G +VRVVS  S  +FD Q+  YKES+LP+ ++ R+ IE
Sbjct:  405 IHYGVREFGMTAIANGISHHG-GFIPYTSTFLMFVEYARNAVRMAALMNTKHIFVYTHDSIGLGEDGPTHQPIEQLANLRMTPNIDVWRPSDQVETAVAWKYAIEEKNGPTALILSRQNLFQFSRNNEQIKNISYGAYILYDS---KKPIDIIFISTGSELQITLTSAKKIAALGYSVRVVSMPSNNVFDRQNIDYKESILPSYITKRIVIE 612          

HSP 2 Score: 23.483 bits (49), Expect = 8.606e-43
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:   23 LPGLLGGSADLASS 64
            LP L+GGSADL+ S
Sbjct:  372 LPELIGGSADLSPS 385          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKTC_RALEH (Transketolase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbTC PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.461e-42
Identity = 102/211 (48.34%), Postives = 124/211 (58.77%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVE--KGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            V +GVRE GM A  NGIALH  GLIPY  TF  F+DY R AIR++AL    V++V+THDSIGLGEDGPTHQP+EH AS R +PN  + RP DG ETA A+  A+     PS L LSRQ L           E  +G Y++ D  +   P V+LI TGS               G A RVVS    ELF  Q  AY+++VLP  +  RVS+E
Sbjct:  411 VSYGVREFGMAAAMNGIALHG-GLIPYGGTFMTFSDYSRNAIRMAALMRLRVVHVLTHDSIGLGEDGPTHQPVEHAASLRLIPNNQVWRPCDGAETAYAWLAALRREDGPSCLVLSRQALMPFERNPAQRAEIARGGYVLRDVPA---PRVVLIATGSEVEIAMRAALDLADAGIAARVVSMPCVELFYAQDVAYRDTVLPPGL-PRVSVE 616          

HSP 2 Score: 24.2534 bits (51), Expect = 1.461e-42
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2
Query:   23 LPGLLGGSADLASS 64
            LP LLGGSADL  S
Sbjct:  378 LPELLGGSADLTGS 391          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_RHOSH (Transketolase OS=Rhodobacter sphaeroides GN=tklB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.687e-42
Identity = 98/203 (48.28%), Postives = 122/203 (60.10%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDG--VEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAA 726
            + +G+REHGM A  NGIALH  GL PY  TF  F DY R +IR+SAL    V YVMTHDSIGLGEDGPTHQP+EHLAS RA+PN+ ++RPAD  ETA A+++A+     P++L LSRQ LP +     D     +GAY++ D     +  V LI TGS               G A  VVS   +ELF  Q   Y+ +VL  A
Sbjct:  402 IHYGIREHGMAAAMNGIALHG-GLRPYGGTFMAFADYCRPSIRLSALMGVPVTYVMTHDSIGLGEDGPTHQPVEHLASLRAIPNLAVIRPADAVETAEAWEIAMTATSTPTLLVLSRQNLPTVRTEHRDENLTARGAYLLRD---PGERQVTLIATGSELELALAAADLLAAEGIAAAVVSAPCFELFAAQPADYRATVLGRA 600          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_XANFL (Transketolase OS=Xanthobacter flavus GN=cbbT PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.122e-42
Identity = 99/213 (46.48%), Postives = 131/213 (61.50%), Query Frame = 1
Query:  124 VRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLA--GTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVL---PAAVSARVSI 747
            + +GVREHGM A  NG+ALH  GLIP+   F VF+DY R AIR++AL    VI+V+THDSIGLGEDGPTHQP+EHLA+ RA+PN+L++RP D  ETA  +++A+ +  RPS L LSRQ LP L    T+++   +GAY I   ++       L  TGS               G   RVVS  S+ELF E+  A +  V+   PA V+   +I
Sbjct:  408 IHYGVREHGMAAAMNGMALHK-GLIPFSGGFMVFSDYCRPAIRLAALMGERVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPNLLVMRPCDTVETAECWQIALQSTDRPSALILSRQNLPLLRTDATAVNRSAEGAYEIL--AASGPAQASLFATGSEVSLAVEAAKLLEAQGVPTRVVSISSFELFLERPAAERAKVIGDAPAKVAVEAAI 617          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: DAS_CANBO (Dihydroxyacetone synthase OS=Candida boidinii GN=DAS1 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 4.249e-35
Identity = 88/213 (41.31%), Postives = 120/213 (56.34%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPG-LIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG-TSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            R V FG+REH M AI NG+A  + G  +P  ++F++F  Y   A+R++AL E   I++ THDSIG GEDGPTHQPI   A +RAMPN   +RP D +E  G ++ AV      ++ +LSR ++P   G +SI+  ++G Y+  D       D+ LIG GS            R  G  VR++SF    LFDEQS  Y+ SVL       V IE
Sbjct:  423 RYVEFGIREHCMCAIANGLAAFNKGTFLPITSSFYMFYLYAAPALRMAALQELKAIHIATHDSIGAGEDGPTHQPIAQSALWRAMPNFYYMRPGDASEVRGLFEKAV-ELPLSTLFSLSRHEVPQYPGKSSIELAKRGGYVFED---AKDADIQLIGAGSELEQAVKTARILRSRGLKVRILSFPCQRLFDEQSVGYRRSVLQRGKVPTVVIE 631          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_TREPA (Transketolase OS=Treponema pallidum GN=tkt PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.091e-34
Identity = 82/199 (41.21%), Postives = 118/199 (59.30%), Query Frame = 1
Query:  130 FGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDG----VEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 714
            FGVRE  M AI NG+ LH  GL  + ATF VF+DY R A+R++AL     ++V+THDSI +GEDGPTHQP+E LA+ RA+PN+L+LRPAD  ET  A+K+A+ +R  P  + LSRQ +P    +         E GAY++ +   G  P++ ++ +GS            +   + VRVVS +  E F+   D  +  +
Sbjct:  408 FGVREFAMAAIVNGMQLHG-GLRAFGATFMVFSDYFRPALRLAALMRIPSVFVLTHDSIFVGEDGPTHQPVETLAALRAIPNVLVLRPADAEETFEAWKIALLHRSGPVCIVLSRQNVPVFEKSDSSWRSTVEESGAYVVRE--GGATPELTVLASGSEVDLALRAAQLSK---RRVRVVSVLCKERFEAAGDEVQRRI 600          

HSP 2 Score: 22.3274 bits (46), Expect = 2.091e-34
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:   23 LPGLLGGSADL 55
            LP L+GGSADL
Sbjct:  372 LPNLVGGSADL 382          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_MYCGE (Transketolase OS=Mycoplasma genitalium GN=tkt PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.083e-30
Identity = 81/234 (34.62%), Postives = 120/234 (51.28%), Query Frame = 1
Query:   49 RPCFFHMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVLPAAVSARVSIE 750
            R CF     +K+  D   + P  RN++ G+RE  M  I NG+ALH  G+     TF  F DY + AIR+ AL    V YV THDS  +G DGPTHQP + L   RA+ N+ + RP D  ET   +   + ++ + ++L L+RQ L  +  T      KG YI+ D     +PD+I+  +GS             K    VR++S  +  L  +Q + Y +S+  A  S+ ++IE
Sbjct:  371 RSCF-----IKIGDDNLHENPCSRNIQIGIREFAMATIMNGMALHG-GIKVMGGTFLAFADYSKPAIRLGALMNLPVFYVYTHDSYQVGGDGPTHQPYDQLPMLRAIENVCVFRPCDEKETCAGFNYGLLSQDQTTVLVLTRQPLKSIDNTDSLKTLKGGYILLDR---KQPDLIIAASGSEVQLAIEFEKVLTKQNVKVRILSVPNITLLLKQDEKYLKSLFDAN-SSLITIE 594          
The following BLAST results are available for this feature:
BLAST of CX290272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
TKT_RHIME8.542e-4448.61Transketolase OS=Rhizobium meliloti GN=cbbT PE=3 S... [more]
TKT_BUCAI2.985e-4346.12Transketolase OS=Buchnera aphidicola subsp. Acyrth... [more]
TKTP_RALEH5.068e-4347.39Transketolase, plasmid OS=Ralstonia eutropha (stra... [more]
TKT_BUCAP8.606e-4347.17Transketolase OS=Buchnera aphidicola subsp. Schiza... [more]
TKTC_RALEH1.461e-4248.34Transketolase, chromosomal OS=Ralstonia eutropha (... [more]
TKT_RHOSH4.687e-4248.28Transketolase OS=Rhodobacter sphaeroides GN=tklB P... [more]
TKT_XANFL6.122e-4246.48Transketolase OS=Xanthobacter flavus GN=cbbT PE=3 ... [more]
DAS_CANBO4.249e-3541.31Dihydroxyacetone synthase OS=Candida boidinii GN=D... [more]
TKT_TREPA2.091e-3441.21Transketolase OS=Treponema pallidum GN=tkt PE=3 SV... [more]
TKT_MYCGE1.083e-3034.62Transketolase OS=Mycoplasma genitalium GN=tkt PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC02022D07SK IF1 Citrus clementina cDNA clone C02022D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290272 ID=CX290272; Name=CX290272; organism=Citrus clementina; type=EST; length=751bp
GAATTCGGCACGAGGAAAGACTCTCCCTGGTCTTCTTGGTGGTAGTGCAG
ACCTTGCTTCTTCCACATGACCCTACTAAAAATGTTTGGGGACTTCCAAA
AGGACACCCCAGAGGAACGTAATGTTCGGTTTGGTGTTAGGGAGCATGGG
ATGGGAGCCATCTGCAATGGCATTGCCCTGCACAGCCCTGGCCTAATTCC
TTACTGTGCTACTTTCTTTGTTTTCACCGACTACATGAGAGCTGCTATAA
GGATATCTGCTCTGTGTGAAGCTGGCGTTATCTATGTTATGACCCATGAT
TCTATTGGTCTTGGAGAAGATGGACCTACCCATCAGCCAATTGAACACTT
GGCAAGTTTCCGTGCCATGCCCAACATTTTGATGCTCCGTCCGGCTGACG
GTAATGAAACTGCTGGTGCATACAAGGTTGCTGTTGCCAACAGGAAGAGA
CCGTCCATCCTTGCCCTTTCCCGGCAAAAGCTTCCCCACCTTGCTGGAAC
TTCCATTGATGGTGTTGAAAAGGGTGCCTACATAATTTCGGACAATTCTT
CTGGTAACAAACCTGATGTCATTTTGATTGGAACTGGTTCTGAATTGGAA
ATTGCCGCCAAAGCAGCTGAGGAACTTAGAAAGGGAGGAAAGGCTGTAAG
AGTTGTCTCCTTTGTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCT
ACAAGGAAAGTGTGCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAA
G
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