CX290272

Overview
NameCX290272
Unique NameCX290272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: DAS_PICAN (Dihydroxyacetone synthase OS=Pichia angusta GN=DAS PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.413e-30
Identity = 82/202 (40.59%), Postives = 115/202 (56.93%), Query Frame = 1
Query:  118 RNVRFGVREHGMGAICNGIALHSPG-LIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAG-TSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESVL 717
            R + +G+REH M AI NG+A ++ G  +P  +TFF+F  Y   AIR++ L E   I++ THDSI  GE+GPTHQP+E  A FRAMPNI  +RP D  E  G ++ AV      SIL+LSR ++    G +S +  ++G YI+ D       +V +IG G+             +  +  RV+S     LFDEQS  Y+ SVL
Sbjct:  425 RYIEYGIREHAMCAIANGLAAYNKGTFLPITSTFFMFYLYAAPAIRMAGLQELKAIHIGTHDSINEGENGPTHQPVESPALFRAMPNIYYMRPVDSAEVFGLFQKAV-ELPFSSILSLSRNEVLQYPGKSSAEKAQRGGYILED---AENAEVQIIGVGAEMEFAYKAAKILGRKFR-TRVLSIPCTRLFDEQSIGYRRSVL 621          
BLAST of CX290272 vs. ExPASy Swiss-Prot
Match: TKT_MYCPN (Transketolase OS=Mycoplasma pneumoniae GN=tkt PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.564e-29
Identity = 76/213 (35.68%), Postives = 108/213 (50.70%), Query Frame = 1
Query:   76 LKMFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAIRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVANRKRPSILALSRQKLPHLAGTSIDGVEKGAYIISDNSSGNKPDVILIGTGSXXXXXXXXXXXXRKGGKAVRVVSFVSWELFDEQSDAYKESV 714
            +K+  D     P  RN++ G+RE GM  I NG+ALH  G+     TF  F DY + AIR+ AL      YV THDS  +G DGPTHQP + L   RA+ N+ + RP D  ETA      + ++ + ++L L+RQ LP L  +      KG YIIS+     +PDVI+  +GS             +     RVVS  +  +   Q  +Y + +
Sbjct:  375 IKLGDDNLHTNPHSRNIQVGIREFGMSTIMNGMALHG-GVKVMGGTFLAFADYSKPAIRLGALMNLPTFYVYTHDSYQVGGDGPTHQPYDQLPMLRAIENVQVWRPCDEKETAAGVNYGLLSQDQTNVLILTRQALPSLEQSDSVQTLKGGYIISNR---KQPDVIVAASGSEVQLALQLEQALNEQQLKTRVVSVPNINMLLSQPQSYLQQL 583          
The following BLAST results are available for this feature:
BLAST of CX290272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
DAS_PICAN2.413e-3040.59Dihydroxyacetone synthase OS=Pichia angusta GN=DAS... [more]
TKT_MYCPN1.564e-2935.68Transketolase OS=Mycoplasma pneumoniae GN=tkt PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC02022D07SK IF1 Citrus clementina cDNA clone C02022D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290272 ID=CX290272; Name=CX290272; organism=Citrus clementina; type=EST; length=751bp
GAATTCGGCACGAGGAAAGACTCTCCCTGGTCTTCTTGGTGGTAGTGCAG
ACCTTGCTTCTTCCACATGACCCTACTAAAAATGTTTGGGGACTTCCAAA
AGGACACCCCAGAGGAACGTAATGTTCGGTTTGGTGTTAGGGAGCATGGG
ATGGGAGCCATCTGCAATGGCATTGCCCTGCACAGCCCTGGCCTAATTCC
TTACTGTGCTACTTTCTTTGTTTTCACCGACTACATGAGAGCTGCTATAA
GGATATCTGCTCTGTGTGAAGCTGGCGTTATCTATGTTATGACCCATGAT
TCTATTGGTCTTGGAGAAGATGGACCTACCCATCAGCCAATTGAACACTT
GGCAAGTTTCCGTGCCATGCCCAACATTTTGATGCTCCGTCCGGCTGACG
GTAATGAAACTGCTGGTGCATACAAGGTTGCTGTTGCCAACAGGAAGAGA
CCGTCCATCCTTGCCCTTTCCCGGCAAAAGCTTCCCCACCTTGCTGGAAC
TTCCATTGATGGTGTTGAAAAGGGTGCCTACATAATTTCGGACAATTCTT
CTGGTAACAAACCTGATGTCATTTTGATTGGAACTGGTTCTGAATTGGAA
ATTGCCGCCAAAGCAGCTGAGGAACTTAGAAAGGGAGGAAAGGCTGTAAG
AGTTGTCTCCTTTGTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCT
ACAAGGAAAGTGTGCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAA
G
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