CX290275

Overview
NameCX290275
Unique NameCX290275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290275 vs. ExPASy Swiss-Prot
Match: Y4294_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 55/186 (29.57%), Postives = 85/186 (45.70%), Query Frame = 2
Query:   23 NRIQGSILVPPPSTKVLLVSN------NKLSGKIPPXXXXXXXXXXXXXXXXXXX-GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI 559
            N   GS    P +T  LL +N      NKL+G +P                     G IP  L +  T L  +HL+NN + G+I    ++ S +R LDL+ N+ +G LP        L+V+N+  N +S S P  +  +  L  L +  N F GPL  SN++    A  +   S+N+ +G +P  +
Sbjct:  396 NHFTGSF---PDATPQLLRANHLNLSYNKLTGSLPERIPTHYPKLRVLDISSNSLEGPIPGALLSMPT-LEEIHLQNNGMTGNIGPLPSSGSRIRLLDLSHNRFDGDLPGVFGSLTNLQVLNLAANNLSGSLPSSMNDIVSLSSLDVSQNHFTGPL-PSNLSSNIMAFNV---SYNDLSGTVPENL 573          
BLAST of CX290275 vs. ExPASy Swiss-Prot
Match: Y3475_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 46/152 (30.26%), Postives = 72/152 (47.37%), Query Frame = 2
Query:  170 GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNS-----------------NITFPFQALRI-----IDLSHNEFTGFLPRRI 559
            G +P  + N S +L+TL L    + G I     N  +L+ L L+ N L GPLP SL K + L  +++  N +S   P ++G++  L+ L L +N F G +  S                 N T P + ++I     +D+S N   G LP+ I
Sbjct:  350 GDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDI 501          

HSP 2 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 57/228 (25.00%), Postives = 97/228 (42.54%), Query Frame = 2
Query:   71 LLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS------------------------LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV-----DEQGRLEYMGGAFYDESITVAMQGHD 667
            L++  N LSG +P                    G IP  +GN  T L TL L NN  EG +  +  N SHL                          LD++ N L G LP+ +     L  +++G N +S   P  LG+   ++ L L  N FYG + +         ++ +DLS+N+ +G +P   F S   ++ +     + +G++   G   ++ + TV++ G++
Sbjct:  390 LILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNM-TMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLK---GLVGVKEVDLSNNDLSGSIP-EYFASFSKLEYLNLSFNNLEGKVPVKG--IFENATTVSIVGNN 610          
BLAST of CX290275 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 51/186 (27.42%), Postives = 77/186 (41.40%), Query Frame = 2
Query:   71 LLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFST-----------------------ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI 559
            L VSNN LSG IP                    G +   +GN  +                        L++++L+ N   G + ++F     L SL L+ N L G +P+SL  C  L  +N   N +S+  P  LGSL  L  L L  N+  G +    +      L ++DLS+N+ TG +P  +
Sbjct:  393 LRVSNNSLSGMIPSGIWGLPNLQFLDLASNYFEGNLTGDIGNAKSLGSLDLSNNRFSGSLPFQISGANSLVSVNLRMNKFSGIVPESFGKLKELSSLILDQNNLSGAIPKSLGLCTSLVDLNFAGNSLSEEIPESLGSLKLLNSLNLSGNKLSGMI---PVGLSALKLSLLDLSNNQLTGSVPESL 575          
BLAST of CX290275 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 50/183 (27.32%), Postives = 88/183 (48.09%), Query Frame = 2
Query:   68 VLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKL---------EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV 589
            VL +S+N LSG +P                    G++P   G+  ++   + L +N   G I  +F   + LRSL+L+ N LEGP+P   ++  +L         E++++  N ++   P  +G++ ++K+L L +N+  G L +         L  +DLS+N F G +P ++ PS     NV
Sbjct:  368 VLDLSSNNLSGSLPNFTSAFSRLSVLSIRNNSVSGSLPSLWGD--SQFSVIDLSSNKFSGFIPVSFFTFASLRSLNLSRNNLEGPIPFRGSRASELLVLNSYPQMELLDLSTNSLTGMLPGDIGTMEKIKVLNLANNKLSGELPSD--LNKLSGLLFLDLSNNTFKGQIPNKL-PSQMVGFNV 545          
BLAST of CX290275 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  194 NFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLP 550
            N  ++++TL L N+ L G I     +   L+SLDL++N   GPLP S     +L  +++  NMIS   P  +G LH L  L L  N   G L  +N+    + L ++ L +N F+G +P
Sbjct:   63 NNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSDNALAGKL-PTNLA-SLRNLTVVSLENNYFSGEIP 179          
BLAST of CX290275 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 41/128 (32.03%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  188 LGNFSTELIT------LHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPR 553
            LG+ + +L +      L L +N   G + D+  NA+ L+S+ L SN L G LP+S+     L+++N+  N  +   P  +  L  L ++ L  N F G     +I   F+A +I+DLS N   G LP+
Sbjct:   92 LGSITPDLFSIPYLRILDLSSNFFNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLLKNLTVVSLSKNTFSG-----DIPSGFEAAQILDLSSNLLNGSLPK 214          
BLAST of CX290275 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 52/182 (28.57%), Postives = 81/182 (44.51%), Query Frame = 2
Query:   20 NNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG--PLCNSNITFPFQALRIIDLSHNEFTGFLP 550
            NN++ G I       P   +L +S+N  +G IP                    G+IP  +G+ +  +I +    N   G I ++      L  LDL+ N+L G +PR L     L  +N+  N +S   P  +G L  L  L L SN+F G  PL   N+      L +++LS+N  +G +P
Sbjct:  412 NNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNG-IIEISGAENDFSGEIPESLVKLKQLSRLDLSKNQLSGEIPRELRGWKNLNELNLANNHLSGEIPKEVGILPVLNYLDLSSNQFSGEIPLELQNL-----KLNVLNLSYNHLSGKIP 587          
The following BLAST results are available for this feature:
BLAST of CX290275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
Y4294_ARATH2.278e-1129.57Probable LRR receptor-like serine/threonine-protei... [more]
Y3475_ARATH2.278e-1130.26Probable LRR receptor-like serine/threonine-protei... [more]
IKU2_ARATH2.976e-1127.42Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]
Y5020_ARATH8.658e-1127.32Probable inactive receptor kinase At5g10020 OS=Ara... [more]
Y4372_ARATH8.658e-1134.45Probable LRR receptor-like serine/threonine-protei... [more]
RPKL_ARATH8.658e-1132.03Receptor protein kinase-like protein At4g34220 OS=... [more]
RLK5_ARATH8.658e-1128.57Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC02022D10SK IF1 Citrus clementina cDNA clone C02022D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290275 ID=CX290275; Name=CX290275; organism=Citrus clementina; type=EST; length=711bp
GAATTCGGCACGAGGGCGAAACAACAGAATCCAAGGATCAATTCTGGTTC
CACCACCTTCAACAAAAGTCTTGTTAGTTTCAAACAATAAATTGTCCGGA
AAGATCCCTCCATCTATTTGCAGCTTGAGTTCCCTTCAATATCTTTCCTT
ATCTGACAACAATTTGAGCGGAACAATTCCACCATGTCTTGGAAACTTTA
GCACTGAGCTGATTACTCTGCACTTGAAGAACAACAGCCTTGAGGGTCAC
ATCCATGATACTTTTGCAAATGCAAGTCATTTAAGGAGTCTTGACCTTAA
TAGCAACAAATTAGAAGGGCCATTACCAAGATCTCTGGCTAAATGTATTA
AGCTGGAAGTTGTCAATGTGGGGAAAAACATGATTAGTGACTCATTTCCA
TGCTGGTTGGGATCACTTCATGAGCTAAAAATTCTTGTCTTGAGGTCTAA
TCGATTCTATGGTCCACTATGCAACTCCAATATTACATTTCCCTTTCAAG
CCCTTCGAATCATTGATCTCTCTCATAATGAATTCACTGGTTTTCTACCA
AGAAGGATTTTTCCTAGTATGGAAGCAATGAAGAATGTGGACGAACAGGG
AAGACTTGAATATATGGGTGGAGCCTTCTATGACGAGTCCATAACGGTGG
CAATGCAAGGACATGATTTTCAATTGCAAAAGATCTTAGTCATGTTTAGA
GCAATGGATTT
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