CX290278

Overview
NameCX290278
Unique NameCX290278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.173e-37
Identity = 96/227 (42.29%), Postives = 125/227 (55.07%), Query Frame = 1
Query:   52 SYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS---FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQ-PVSVGI-EASGADFQFYSGGVFTGP-CGAELDHGVAAVGYGTSKGSDY 714
            SY +G+N   DM+ EE       L+   P  R  + + S    + LP SVDWR+KG VT VK QGSCGSCWAFS   A+EG  ++ +G L SLS Q L+DC T     N GC GG M  AF+YI+ +  +  E  YPY                   S Y ++P  DE++L +A+A + PVSVGI +AS + F  Y  GV+  P C   ++HGV  VGYGT  G DY
Sbjct:   70 SYSVGMNHMGDMTPEEVIGYMGSLRIPRPWNRSGTLKSSSN--QTLPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTEEKYGNKGCGGGFMTEAFQYIIDT-SIDSEASYPY-KAMDEKCLYDPKNRAATCSRYIELPFGDEEALKEAVATKGPVSVGIDDASHSSFFLYQSGVYDDPSCTENMNHGVLVVGYGTLDGKDY 292          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 92/244 (37.70%), Postives = 136/244 (55.74%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGA-VTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALA-HQPVSVGIEASGADFQFYSGGVFTG----PCGAELDHGVAAVGYGTSKGSDY 714
            F +  + I+  N    ++ LGLN+F+DMS +E ++KYL  +PQ  +  + +     R     P S+DWRKKG  V+PVKNQGSCGSCW FST  A+E    I +G + SL+EQ+L+DC  +FNN GC GGL   AF+YI  + G+  E+ YPY                  +    ++  NDE+++++A+A + PVS   E +  DF  Y  G+++         +++H V AVGYG   G  Y
Sbjct:   58 FVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSATKGNY---LRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY-KGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPY 296          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37
Identity = 97/243 (39.92%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALA-HQPVSVGIEASGADFQFYSGGVFTGP-CGA---ELDHGVAAVGYGTSKGSDY 714
            F   L+ +   N++  SY LG+N FADMS EEF+   LG           +       V ALP++ DWR+ G V+PVKNQG CGSCW FST  A+E      +G   SLSEQ+L+DC  +FNN GCNGGL   AF+YI  +GGL  EE YPY                  +    ++    E  L  A+   +PVSV  E     F+ Y  GV+T   CG    +++H V AVGYG   G  Y
Sbjct:   83 FSESLQLVRSTNRKGLSYRLGINRFADMSWEEFRATRLGAAQNCSATLTGNHRMRAAAV-ALPETKDWREDGIVSPVKNQGHCGSCWTFSTTGALEAAYTQATGKPISLSEQQLVDCGFAFNNFGCNGGLPSQAFEYIKYNGGLDTEESYPYQGVNGICKFKNENVGVKVLDSV-NITLGAEDELKDAVGLVRPVSVAFEVI-TGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVPY 322          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37
Identity = 88/225 (39.11%), Postives = 119/225 (52.89%), Query Frame = 1
Query:   64 GLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYR----DVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD--------TSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTG-PCGAELDHGVAAVGYGTS 699
            G+ +F+D++  EF+  YLGL+       +   E ++       + LP   DWR  GAV PVKNQGSCGSCW+FS   A+EG + + +G L  LSEQ+ +DCD         S ++GCNGGLM  AF Y+  +GGL  E+DYPY                  +  +  V  ++ Q     + H P+++GI A  A  Q Y GGV     CG  LDHGV  VGYG S
Sbjct:   92 GVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKAGGLESEKDYPY-TGSDGKCKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINA--AYMQTYIGGVSCPYICGRHLDHGVLLVGYGAS 313          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.118e-37
Identity = 94/224 (41.96%), Postives = 128/224 (57.14%), Query Frame = 1
Query:   46 VTSYWLGLNEFADMSHEEFKNKYLGLKPQFPT----RRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF-NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQ-PVSVGIEASGADFQFYSGGVFT-GPCGAELDHGVAAVGYGT 696
            + SY   LN+ AD++ EEF  +  GL+    T    +RQ S  + Y   E LP  VDWR KGAVTPV+NQG CGSC+AF+T AA+E  ++ ++G L  LS Q ++DC  +  NNGC+GG M  AF+Y  +  G+  E  YPY+                  +G+ ++   DE +L  A+A + PV VGI  S   F+FY  GV++ G CG   DH V AVGYGT
Sbjct:  132 LVSYTTALNDLADLTDEEFMVRN-GLRLPNQTDLRGKRQTSEFYRYDKSERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVDCTRNLGNNGCSGGYMPTAFQY-ASRYGIAMESRYPYVGTEQRCRWQQSIAVVTD-NGFNEIQPGDELALKHAVAKRGPVVVGISGSKRSFRFYKDGVYSEGNCGRP-DHAVLAVGYGT 351          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 90/244 (36.89%), Postives = 134/244 (54.92%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKG-AVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALA-HQPVSVGIEASGADFQFYSGGVFTG----PCGAELDHGVAAVGYGTSKGSDY 714
            F    + I   N+   ++ + LN+F+DMS  E K+K+L  +PQ  +  + +     R     P S+DWRKKG  V+PVKNQG+C SCW FST  A+E    I SG + SL+EQ+L+DC  +FNN GC GGL   AF+YI+ + G+ +E+ YPY+                 +    ++  NDE ++++A+A + PVS   E +  DF  Y  GV++         +++H V AVGYG   G  Y
Sbjct:   56 FANNWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWSEPQNCSATKSNY---LRGTGPYPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFNNHGCKGGLPSQAFEYILYNKGIMEEDSYPYI-GKDSSCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVT-EDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLLY 294          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.586e-36
Identity = 93/243 (38.27%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALA-HQPVSVGIEASGADFQFYSGGVFTGP-CGA---ELDHGVAAVGYGTSKGSDY 714
            F   L+ +   N+    Y LG+N FADMS EEF+   LG           +     RD  ALP++ DWR+ G V+PVK+QG CGSCW FST  ++E      +G   SLSEQ+L+DC T++NN GC+GGL   AF+YI  +GGL  EE YPY                  +    ++    E  L  A+   +PVSV  +     F+ Y  GV+T   CG    +++H V AVGYG   G  Y
Sbjct:   86 FSESLELVRSTNRRGLPYRLGINRFADMSWEEFQASRLGAAQNCSATL--AGNHRMRDAAALPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDCATAYNNFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTGVNGICHYKPENVGVKVLDSV-NITLGAEDELKNAVGLVRPVSVAFQVING-FRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVPY 324          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.586e-36
Identity = 94/243 (38.68%), Postives = 124/243 (51.03%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALA-HQPVSVGIEASGADFQFYSGGVFTGP-CGA---ELDHGVAAVGYGTSKGSDY 714
            F   L+ +   N++   Y LG+N F+DMS EEF+   LG           +     RD  ALP++ DWR+ G V+PVKNQ  CGSCW FST  A+E      +G   SLSEQ+L+DC   FNN GCNGGL   AF+YI  +GG+  EE YPY                  +    ++  N E  L  A+   +PVSV  +     F+ Y  GV+T   CG    +++H V AVGYG   G  Y
Sbjct:   85 FSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATL--AGNHLMRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDCAGGFNNFGCNGGLPSQAFEYIKYNGGIDTEESYPYKGVNGVCHYKAENAAVQVLDSV-NITLNAEDELKNAVGLVRPVSVAFQVIDG-FRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVENGVPY 323          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.071e-36
Identity = 75/170 (44.12%), Postives = 107/170 (62.94%), Query Frame = 1
Query:  184 ALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYG 693
            A+P+S+DWR  GAVT VKNQ  CG+CWAF+ +A VE I +I  G L  LSEQ+++DC   +  GC GG    AF++I+++ G+     YPY                  I+GY  VP N+E S++ A++ QP++V ++A+ A+FQ+Y  GVF GPCG  L+H V A+GYG
Sbjct:    1 AVPQSIDWRDYGAVTSVKNQNPCGACWAFAAIATVESIYKIKKGILEPLSEQQVLDCAKGY--GCKGGWEFRAFEFIISNKGVASGAIYPY-KAAKGTCKTDGVPNSAYITGYARVPRNNESSMMYAVSKQPITVAVDAN-ANFQYYKSGVFNGPCGTSLNHAVTAIGYG 166          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.532e-36
Identity = 89/222 (40.09%), Postives = 129/222 (58.11%), Query Frame = 1
Query:   64 GLNEFADMSHEEFKNKYLGLKPQF--PTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD--------TSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAE--LDHGVAAVGYG 693
            G+ +F+D++  EF+ ++LGLK +   P   Q +      +   LP+  DWR+KGAVTPVK+QGSCGSCWAFST  A+EG + + +G L SLSEQ+L+DCD         S ++GCNGGLM+ AF+Y++ SGG+ +E+DY Y                  +S +  V  +++Q     + + P++V I A  A  Q Y  GV      A+  LDHGV  VG+G
Sbjct:   92 GITKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTTN---LPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLESGGVVQEKDYAY-TGRDGSCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINA--AWMQTYMSGVSCPYVCAKSRLDHGVLLVGFG 307          
The following BLAST results are available for this feature:
BLAST of CX290278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CATS_RAT4.173e-3742.29Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATH_PIG5.450e-3737.70Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CYSP2_MAIZE7.118e-3739.92Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CYSP1_MAIZE7.118e-3739.11Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CATL_BRUPA7.118e-3741.96Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CATH_MOUSE9.296e-3736.89Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
ORYC_ORYSJ1.586e-3638.27Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
ALEU_HORVU1.586e-3638.68Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
BROM2_ANACO2.071e-3644.12Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CYSP_PEA3.532e-3640.09Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02022E01SK IF1 Citrus clementina cDNA clone C02022E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290278 ID=CX290278; Name=CX290278; organism=Citrus clementina; type=EST; length=719bp
GAATTCGGCACGAGGTTGAAGCATATTGATCAGAGGAACAAAGAGGTCAC
TAGCTATTGGCTTGGTTTGAATGAGTTTGCAGACATGAGCCACGAAGAGT
TCAAGAACAAATATTTAGGATTGAAACCTCAGTTCCCCACGAGGAGACAG
CCTTCTGCCGAGTTTAGCTATAGAGATGTCGAAGCTTTGCCGAAATCTGT
TGATTGGAGGAAGAAAGGAGCTGTTACTCCTGTCAAGAACCAAGGTTCAT
GTGGTAGTTGTTGGGCATTTTCAACTGTTGCAGCTGTGGAAGGCATCAAC
CAGATAGTCTCAGGAAATCTAACTTCATTGTCCGAACAAGAGTTGATTGA
TTGCGACACAAGTTTCAACAATGGCTGCAATGGAGGTCTAATGGATTATG
CATTCAAATATATAGTTGCAAGTGGAGGACTCCACAAGGAAGAAGACTAC
CCATATCTTATGGAGGAAGGCACTTGTGAGGAAAAGAAGGAAGAGATGGA
GGTAGTGACAATCAGTGGCTACCAAGATGTGCCAGAAAACGATGAACAAA
GTCTCTTGAAAGCACTGGCTCACCAGCCTGTTAGTGTAGGCATCGAGGCT
TCTGGCGCAGACTTCCAATTTTACAGTGGGGGTGTATTCACTGGGCCTTG
TGGAGCTGAGCTCGATCACGGCGTTGCTGCAGTTGGATATGGAACATCAA
AGGGTTCAGATTACATCAT
back to top