CX290278

Overview
NameCX290278
Unique NameCX290278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 95/242 (39.26%), Postives = 125/242 (51.65%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALA-HQPVSVGIEASGADFQFYSGGVFTGPCG---AELDHGVAAVGYGTSKGSDY 714
            F   LK I   N++  SY LG+NEF D++ +EF+   LG         + + + +      LP++ DWRK G V+PVK QG CGSCW FST  A+E       G   SLSEQ+L+DC  +FNN GCNGGL   AF+YI  +GGL  EE YPY                  IS   ++    E  L  A+A  +PVSV  E      Q+ SG   +  CG    +++H V AVGYG   G+ Y
Sbjct:   81 FLDNLKMIRSHNRKGLSYKLGINEFTDLTWDEFRKHKLGASQNCSATTKGNLKLTN---VVLPETKDWRKDGIVSPVKAQGKCGSCWTFSTTGALEAAYAQAFGKGISLSEQQLVDCAGAFNNFGCNGGLPSQAFEYIKFNGGLDTEEAYPYTGKNGICKFSQANIGVKVISSV-NITLGAEYELKYAVALVRPVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTPY 318          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 90/244 (36.89%), Postives = 133/244 (54.51%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGA-VTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALA-HQPVSVGIEASGADFQFYSGGVFTG----PCGAELDHGVAAVGYGTSKGSDY 714
            F +  + I+  N    ++ + LN+F+DMS  E K+KYL  +PQ  +  + +     R     P SVDWRKKG  V+PVKNQG+CGSCW FST  A+E    I +G + SL+EQ+L+DC   FNN GC GGL   AF+YI+ + G+  E+ YPY                  +    ++   DE+++++A+A + PVS   E +  DF  Y  G+++         +++H V AVGYG   G  Y
Sbjct:   58 FASNWRKINAHNNGNHTFKMALNQFSDMSFAEIKHKYLWSEPQNCSATKSNY---LRGTGPYPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPY-QGKDGYCKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVT-QDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGIPY 296          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.028e-35
Identity = 83/221 (37.56%), Postives = 119/221 (53.85%), Query Frame = 1
Query:   64 GLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVAS--GGLHKEEDYPYL--XXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYGTSKGSDY 714
            G+  F+DM+ EEF+ +Y      F   ++   +         P +VDWR+KGAVTPVK QG CGSCWAFST+  +EG  Q+    L SLSEQ L+ CDT  ++GCNGGLMD AF +IV S  G +  E  YPY+                   I+ + D+P++++        + P+++ ++A    F  Y+GG+ T     +LDHGV  VGY  +    Y
Sbjct:   85 GVTPFSDMTREEFRARYRNGASYFAAAQKRLRKTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDT-IDSGCNGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDAE--SFMDYNGGILTSCTSKQLDHGVLLVGYNDNSNPPY 302          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.290e-35
Identity = 93/243 (38.27%), Postives = 130/243 (53.50%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALA-HQPVSVGIEASGADFQFYSGGVFT-GPCGA---ELDHGVAAVGYGTSKGSDY 714
            F   L  I   NK+  SY LG+N+FAD++ +EF+   LG         + S + +     ALP++ DWR+ G V+PVK+QG CGSCW FST  A+E       G   SLSEQ+L+DC  +FNN GCNGGL   AF+YI ++GGL  E+ YPY                  ++   ++    E  L  A+   +PVS+  E   + F+ Y  GV+T   CG+   +++H V AVGYG   G  Y
Sbjct:   83 FKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGAAQNCSATLKGSHKVTEA---ALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGAFNNYGCNGGLPSQAFEYIKSNGGLDTEKAYPYTGKDETCKFSAENVGVQVLNSV-NITLGAEDELKHAVGLVRPVSIAFEVIHS-FRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVEDGVPY 320          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.906e-35
Identity = 91/245 (37.14%), Postives = 130/245 (53.06%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEV----TSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF-NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAH-QPVSVGIEASGADFQFYSGGVF--TGPCGAELDHGVAAVGYGTSKGSDY 714
            F   L+ I + N +     ++Y+L +N+F+D++ EEF++  +  +   P       E +   V A P+S+DWR KG V PV+NQG CGSCWA ST AA+E  + I SG+   LS Q+L+DC TS+ N+GCNGG     F+Y V   GL  + DYPY                  ++GY+ V  + E SL +A+    P+S  +   G   + Y GG+F  +   G  L HGV  VGYG   G  Y
Sbjct:   47 FQDTLRQIAEHNVKYENGESTYYLAINKFSDITDEEFRDMLMKNEASRPNLE--GLEVADLTVGAAPESIDWRSKGVVLPVRNQGECGSCWALSTAAAIESQSAIKSGSKVPLSPQQLVDCSTSYGNHGCNGGFAVNGFEY-VKDNGLESDADYPYSGKEDKCKANDKSRSVVELTGYKKVTAS-ETSLKEAVGTIGPISAVV--FGKPMKSYGGGIFDDSSCLGDNLHHGVNVVGYGIENGQKY 285          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 89/241 (36.93%), Postives = 125/241 (51.87%), Query Frame = 1
Query:   16 LKHIDQRNKE----VTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF-NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKAL-AHQPVSVGIEASGADFQFYSGGVFTGPCGAEL--DHGVAAVGYGTSKGSDY 714
            +KHI + N      + +Y LGLN+F DM+ EEFK KYL    +          +   +  A+P  +DWR+ G VT VK+QG+CGSCWAFST   +EG          S SEQ+L+DC   + NNGC+GGLM+ A++Y+    GL  E  YPY                  ++GY  V    E  L   + A +P +V ++   +DF  Y  G++     + L  +H V AVGYGT  G+DY
Sbjct:   48 VKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANN-RAVPDKIDWRESGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQYL-KQFGLETESSYPY-TAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVE-SDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDY 284          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.938e-34
Identity = 85/219 (38.81%), Postives = 125/219 (57.08%), Query Frame = 1
Query:   64 GLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYR----DVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIV--ASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQD---VPENDEQSLLKALA-HQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGY 690
            G+ +F D+S  EF  +YL     F   ++ +A+  YR    D+ A+P +VDWR+KGAVTPVK+QG+CGSCWAFS V  +EG   +    L SLSEQ+L+ CD   N+GC+GGLM  AF +++   +G LH E+ YPY+                 +    D   +  + E+++   LA + P+++ ++AS   F  Y  GV T   G +L+HGV  VGY
Sbjct:   82 GITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQH-YRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVSCD-DMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSEELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDAS--SFMSYKSGVLTACIGKQLNHGVLLVGY 296          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 83/218 (38.07%), Postives = 122/218 (55.96%), Query Frame = 1
Query:   64 GLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYR----DVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIV--ASGGLHKEEDYPYL---XXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGY 690
            G+ +F D+S  EF  +YL     F   ++ +A+  YR    D+ A+P +VDWR+KGAVTPVK+QG+CGSCWAFS V  +EG   +    L SLSEQ+L+ CD   N+GC+GGLM  AF +++   +G LH E+ YPY+                    I G+  +  +++        + P+++ ++AS   F  Y  GV T   G +L+HGV  VGY
Sbjct:   82 GITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQH-YRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVSCD-DMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDAS--SFMSYKSGVLTACIGKQLNHGVLLVGY 295          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34
Identity = 89/249 (35.74%), Postives = 131/249 (52.61%), Query Frame = 1
Query:   16 LKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYL----GLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPEND-------EQSLLKALAHQPVSVGIEASGADFQFYSGGVF-----TGPCGAELDHGVAAVGYGTSKGSDY 714
            ++ ++   K   S+ LGLN+FAD++ +EF  KYL     +  Q     +   +  Y   +  P S DWRKKG +T VK QG CG  WAFS   A+E  + I +G+L SLSEQEL+DC    + G   G    +F++++  GG+  ++DYPY                  I GY+ +  +D       EQ+ L A+  QP+SV I+A   DF  Y+GG++     T P G  ++H V  VGYG++ G DY
Sbjct:   75 IRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQAPKDVSQQIKMANKKMKKEQY-SCDHPPASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDC-VEESEGSYNGWQYQSFEWVLEHGGIATDDDYPY-RAKEGRCKANKIQDKVTIDGYETLIMSDESTESETEQAFLSAILEQPISVSIDAK--DFHLYTGGIYDGENCTSPYG--INHFVLLVGYGSADGVDY 316          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.256e-33
Identity = 92/234 (39.32%), Postives = 120/234 (51.28%), Query Frame = 1
Query:   16 LKHIDQRNKE----VTSYWLGLNEFADMSHEEFKNKYLG-LKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS-FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGP-CGA-ELDHGVAAVGYG 693
            LK I   NKE       + + +N FAD + EEF+      L P   T      + S      LP   DWRK+G VTPV+NQG CGSCWAF+ V A+EG     +GNLT LS Q L+DC  S  NNGC  G    AF Y++ + GL  E  YPY                  I+G+ ++P N+    +   +  PVS  I+AS   F+FYSGGV+  P C +  ++H V  VGYG
Sbjct:   56 LKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDILIPAAVTNPSAQKQVSI----GLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDCSKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPY-EGKDGPCRYHSENASANITGFVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYVVNHAVLVVGYG 284          
The following BLAST results are available for this feature:
BLAST of CX290278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CYSP3_SOLLC4.614e-3639.26Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATH_HUMAN4.614e-3636.89Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CYSP_TRYBB1.028e-3537.56Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
ALEU_ARATH2.290e-3538.27Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CATLL_PHACE3.906e-3537.14Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
CATLL_FASHE1.136e-3436.93Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CYSP2_LEIPI1.938e-3438.81Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
LMCPB_LEIME2.532e-3438.07Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
P34_SOYBN7.366e-3435.74P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CATJ_RAT1.256e-3339.32Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02022E01SK IF1 Citrus clementina cDNA clone C02022E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290278 ID=CX290278; Name=CX290278; organism=Citrus clementina; type=EST; length=719bp
GAATTCGGCACGAGGTTGAAGCATATTGATCAGAGGAACAAAGAGGTCAC
TAGCTATTGGCTTGGTTTGAATGAGTTTGCAGACATGAGCCACGAAGAGT
TCAAGAACAAATATTTAGGATTGAAACCTCAGTTCCCCACGAGGAGACAG
CCTTCTGCCGAGTTTAGCTATAGAGATGTCGAAGCTTTGCCGAAATCTGT
TGATTGGAGGAAGAAAGGAGCTGTTACTCCTGTCAAGAACCAAGGTTCAT
GTGGTAGTTGTTGGGCATTTTCAACTGTTGCAGCTGTGGAAGGCATCAAC
CAGATAGTCTCAGGAAATCTAACTTCATTGTCCGAACAAGAGTTGATTGA
TTGCGACACAAGTTTCAACAATGGCTGCAATGGAGGTCTAATGGATTATG
CATTCAAATATATAGTTGCAAGTGGAGGACTCCACAAGGAAGAAGACTAC
CCATATCTTATGGAGGAAGGCACTTGTGAGGAAAAGAAGGAAGAGATGGA
GGTAGTGACAATCAGTGGCTACCAAGATGTGCCAGAAAACGATGAACAAA
GTCTCTTGAAAGCACTGGCTCACCAGCCTGTTAGTGTAGGCATCGAGGCT
TCTGGCGCAGACTTCCAATTTTACAGTGGGGGTGTATTCACTGGGCCTTG
TGGAGCTGAGCTCGATCACGGCGTTGCTGCAGTTGGATATGGAACATCAA
AGGGTTCAGATTACATCAT
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