CX290353

Overview
NameCX290353
Unique NameCX290353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP36_DROME (Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila melanogaster GN=Usp36 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 59/186 (31.72%), Postives = 84/186 (45.16%), Query Frame = 1
Query:   73 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK--YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 621
            L  IFGG L+S V+    N  S T Q F  L LDI      ++EDA     + E LE       G    V+A K   ++     L + L RFS       KL K + F  ++ L +    + +A+ +   Y LV+ VTH G     GHYTA        + +FDD+ V  I    V +  AY++F+
Sbjct:  297 LGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDI--RKADSLEDAFEGHFSRERLEDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFS---MIGNKLTKQISFKSRIDLSKYAARSQAAQAQPLTYRLVSMVTHLGASQHCGHYTAIGSTDTGSFYNFDDSYVRPIAMHSVCNTNAYIMFF 477          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP21_MOUSE (Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 63/192 (32.81%), Postives = 87/192 (45.31%), Query Frame = 1
Query:   67 SALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 621
            S + D+F GQLKS +K Q     S T + F  L L I    ++    ++ D   LF+  E LE             T + K + +Q   +IL+LHL RFS       K    V FPLQ L LG     +  A    Y+L A   H G     GHYTA  R     W  ++D+ V+ +  ++V   + YVLFY
Sbjct:  369 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEGYVLFY 556          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP11_HUMAN (Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 53/163 (32.52%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  172 IYSEAVHTIEDALRLFSAPENLEG----YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR----KYELVATVTHHG--RDPSKGHYTADA-RYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYNK 627
            +  +A   +++ + LF+  E LE     Y  S   +     A K + +  L +ILI+HL RFSY      KL   V FP++ +   + ++ P  E      KY+L+A   H+G  RD   GHYT  A    + QW +FDD SV+ +  +++    AYVLFY +
Sbjct:  773 VMKKAPVRLQECIELFTTVETLEKENPWYCPSCKQHQ---LATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRD---GHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 929          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP9_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 9 OS=Schizosaccharomyces pombe GN=ubp9 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 63/198 (31.82%), Postives = 91/198 (45.96%), Query Frame = 1
Query:   64 PSALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS---KVLHDQ-----AYVLFY 621
            P  +  +F G L S  K       ++  + FL L +DI +    ++   LR FSA E L             +  A+K +KI+ L KIL LHL RF Y    +G  KL  ++ F  ++ L        +AE R Y L + + H G  P +GHY +  R     W+ FDD +VT +  +   +   DQ     AYVLFY
Sbjct:  227 PKWVHSLFEGTLTSETKCLTCENITSRDESFLDLSIDIENHT--SVTSCLRSFSASEMLSSKNKFHCDVCKSLQEAEKRMKIKKLPKILSLHLKRFKYNETQEGHDKLFYTIVFTNEMRLFTTTEDAENAE-RMYYLSSVIVHVGGGPHRGHYVSIVRTKTYGWVLFDDENVTPVNENYLQRFFGDQPGQATAYVLFY 421          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP21_RAT (Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus GN=Usp21 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 62/192 (32.29%), Postives = 86/192 (44.79%), Query Frame = 1
Query:   67 SALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 621
            S + D+F GQLKS +K Q     S T + F  L L I    ++    ++ D   LF+  E LE             T + K + +Q   +IL+LHL RFS       K    V FPLQ L LG     +       Y+L A   H G     GHYTA  R     W  ++D+ V+ +  ++V   + YVLFY
Sbjct:  368 SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGD--FASDKVGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEGYVLFY 555          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP12_YEAST (Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces cerevisiae GN=UBP12 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 55/163 (33.74%), Postives = 78/163 (47.85%), Query Frame = 1
Query:  181 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAK------KSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFND-QWLHFDDASVTAIGTSKVLHDQAYVLFYNKFRRLQD 645
            E   T++D L+LFS PE L       T +    T K      K +++     IL++HL RF      S K+  +V FP+  L L R ++      G  Y+L A   H+G     GHYTA  + F D +W +FDD+ VT       +   AY+LFY   RR +D
Sbjct:  959 ERTITLDDCLQLFSKPEIL-----GLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYG-GLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFY--IRRHKD 1113          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP11_MOUSE (Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 49/154 (31.82%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  196 IEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGR----KYELVATVTHHG--RDPSKGHYTADA-RYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYNK 627
            +++ ++LF+  E LE    +  SS     + T  K + +  L ++LI+HL RFS+      KL   V+FP++ +   + ++ P  E      KY+L+A   H+G  RD   GHYT  A    + QW + DD SV+ +  +++    AYVLFY +
Sbjct:  740 LKECIKLFTTVETLEKENPWYCSSCKQHQLAT--KKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMRD---GHYTTFACNKDSGQWHYLDDNSVSPVNENQIESKAAYVLFYQR 888          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP5_ARATH (Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 1
Query:  283 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFND-QWLHFDDASVTAIGTSKVLHDQAYVLFYNK 627
            A K + +  L ++L++HL RFSY      KL   V FP+  L L + +     ++ + YEL A   H+G     GHYTA  +  +D +W +FDD+ ++ I    V    AYVLFY +
Sbjct:  800 ASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYALTNHYG-GMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP8_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 8 OS=Schizosaccharomyces pombe GN=ubp8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 55/184 (29.89%), Postives = 88/184 (47.83%), Query Frame = 1
Query:   82 IFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQG-STKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYNK 627
            IF G LK+VV      K    V P + + LDI      T++  L  F + E ++ Y   S G+   +   K +    L   + + L RF   +   STK+ K V +P  L +  +     + +   Y+L + V H G   + GHY A   Y+ +QW   DD ++  +  S+VL+ QAY+LFY++
Sbjct:  264 IFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEP---TLQGCLERFVSKEKVQ-YSCHSCGSKNAI---KQLVFDKLPPTICMQLKRFEQNNFAMSTKIDKQVSYPAFLRMRYNF----NQDDVDYQLYSVVCHKGTLDT-GHYIAYT-YYQNQWFLLDDTTIVEVKESEVLNSQAYLLFYHE 434          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP50_MACFA (Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Macaca fascicularis GN=USP50 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 59/190 (31.05%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   67 SALSDIFGGQLK-SVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRT--SSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLFYN 624
            S ++ +F GQL  S+V  +  K +   + F +L L I SE   +++D L+ F   + L        S       TA ++  I    KI+I HL RF        KL   + +PL  +     +     +  KY L A V H G D   GHYTA  +  F   W  FDD  V+ I  + V +  AY+LFY+
Sbjct:  175 SVITQLFEGQLNYSIVCLKCEKCTYKNEVFTVLSLPIPSEYECSLQDCLQCFFQQDTLTWNNQIHCSFCETKQETAVRA-GISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLDLTPYICPIFRKYPKYNLCAVVNHFG-DLDGGHYTAFCKNSFTQAWYSFDDTRVSEIPDTSVQNATAYLLFYS 362          
The following BLAST results are available for this feature:
BLAST of CX290353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP36_DROME2.854e-1231.72Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosop... [more]
UBP21_MOUSE2.854e-1232.81Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus mu... [more]
UBP11_HUMAN3.728e-1232.52Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo s... [more]
UBP9_SCHPO8.305e-1231.82Probable ubiquitin carboxyl-terminal hydrolase 9 O... [more]
UBP21_RAT8.305e-1232.29Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus... [more]
UBP12_YEAST8.305e-1233.74Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccha... [more]
UBP11_MOUSE1.850e-1131.82Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus mu... [more]
UBP5_ARATH2.416e-1135.04Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabido... [more]
UBP8_SCHPO3.156e-1129.89Probable ubiquitin carboxyl-terminal hydrolase 8 O... [more]
UBP50_MACFA3.156e-1131.05Putative ubiquitin carboxyl-terminal hydrolase 50 ... [more]

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Properties
Property NameValue
Genbank descriptionC02023C10SK IF1 Citrus clementina cDNA clone C02023C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290353 ID=CX290353; Name=CX290353; organism=Citrus clementina; type=EST; length=736bp
GATGAATGGGAAACAGTTGGCCCAAAGAACAAATCTGCAGTGACAAGAAC
ACAGAGCTTCCTGCCTTCAGCACTTAGTGATATATTTGGAGGACAGCTGA
AAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCTGCAACTGTTCAGCCA
TTTCTCTTGCTCCACCTTGATATTTACTCTGAAGCTGTGCATACAATTGA
GGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATCTTGAGGGATACCGTA
CATCATCTACTGGAAATGCTGGTGTTGTGACTGCCAAAAAATCTGTCAAG
ATACAGACGCTTTCAAAGATTTTGATTTTACACCTGATGCGTTTTAGTTA
TGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTGTCCGTTTTCCTCTTC
AATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCATCTGCTGAGGGTCGA
AAATATGAACTTGTTGCCACAGTTACCCACCATGGAAGAGATCCCTCGAA
GGGGCATTATACTGCTGATGCTCGGTATTTTAATGACCAGTGGCTCCATT
TTGACGATGCCTCTGTGACTGCTATTGGGACAAGTAAGGTATTGCATGAC
CAGGCATACGTCCTTTTCTACAACAAGTTTAGAAGGTTGCAGGATTATAA
GTTTCAATGGGAGAAAGAAGCCATATCTGATGGATTCAACCCATGACAGT
AGCTGAACTGTTTCTTAATTTGCAGTAGTTTTAAAT
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