CX290408

Overview
NameCX290408
Unique NameCX290408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290408 vs. ExPASy Swiss-Prot
Match: CP4CA_MOUSE (Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 50/177 (28.25%), Postives = 82/177 (46.33%), Query Frame = 2
Query:  122 FVDALL--NLQEEYELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQKAQEELDQVVGPNRVMTEADFQNLHYLQCVVKESMRLHPPTPLMLPHKANADVKISGYNVPKGSVVHVNVWAIGRDPADWKNPLEFRPERFLEEDIDMKGHDYRLLPFGSGRRICPGIQLGI 646
            F+D LL   ++    LSD  +   +   +  G DTT   + W    L  NP  QQ+ ++E+  ++G    +T  D   + Y    +KE++R++PP P +    ++      G ++PKG  V ++ + +  +P  W NP  F P RF         H +  LPF  G R C G Q  +
Sbjct:  289 FLDILLFARMENGKSLSDKDLRAEVDTFMFEGHDTTASGISWIFYALATNPEHQQRCRKEIQSLLGDGTSITWNDLDKMPYTTMCIKEALRIYPPVPSVSRELSSPVTFPDGRSLPKGIHVMLSFYGLHHNPTVWPNPEVFDPSRFAP---GSSRHSHSFLPFSGGARNCIGKQFAM 462          
BLAST of CX290408 vs. ExPASy Swiss-Prot
Match: CP4A4_RABIT (Cytochrome P450 4A4 OS=Oryctolagus cuniculus GN=CYP4A4 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 50/177 (28.25%), Postives = 83/177 (46.89%), Query Frame = 2
Query:  122 FVDALL--NLQEEYELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQKAQEELDQVVGPNRVMTEADFQNLHYLQCVVKESMRLHPPTPLMLPHKANADVKISGYNVPKGSVVHVNVWAIGRDPADWKNPLEFRPERFLEEDIDMKGHDYRLLPFGSGRRICPGIQLGI 646
            F+D LL   ++    LSD  +   +   +  G DTT   V W    L  +P  Q + +EE+  ++G    +T      + Y    +KE++RL+PP P +    +       G ++PKG ++ ++++ +  +P  W+NP  F P RF     D   H +  LPF  G R C G Q  +
Sbjct:  291 FLDVLLFAKMENGSSLSDQDLRAEVDTFMFEGHDTTASGVSWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDQMPYTTMCIKEALRLYPPVPSVTRQLSKPVTFPDGRSLPKGVILFLSIYGLHYNPKVWQNPEVFDPFRFAP---DSAYHSHAFLPFSGGARNCIGKQFAM 464          
BLAST of CX290408 vs. ExPASy Swiss-Prot
Match: C12C1_DROME (Probable cytochrome P450 12c1, mitochondrial OS=Drosophila melanogaster GN=Cyp12c1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 56/191 (29.32%), Postives = 99/191 (51.83%), Query Frame = 2
Query:  143 LQEEYELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQKAQEE-LDQVVGPNRVMTEADFQNLHYLQCVVKESMRLHPPTPLMLPHKANADVKISGYNVPKGSVVHVNVWAIGRDPADWKNPLEFRPERFLEEDIDMKG--------HDYRLLPFGSGRRICPGIQLGIXLVTSMLGHLLHHF 688
            L++  ++     + +  +M++ G+DTT+  +   +  L KNP  QQ+ +EE L ++   +   T  D ++L YL+ V+KES+RL+P T       A ADV + GY +PKG+ + +    + +D   +    EF PER+L    D K         + +  LPFG G R+C G ++    +   + +L+ +F
Sbjct:  302 LEQLLQIDRKLAVVMAMDMLMGGVDTTSTAISGILLNLAKNPEKQQRLREEVLSKLTSLHSEFTVEDMKSLPYLRAVIKESLRLYPVT-FGNARSAGADVVLDGYRIPKGTKLLMTNSFLLKDDRLYPRAKEFIPERWLRRKDDDKSDVLMNKDLNAFIYLPFGFGPRMCVGKRIVDLEMELTVANLVRNF 491          
BLAST of CX290408 vs. ExPASy Swiss-Prot
Match: CP4G1_DROME (Cytochrome P450 4g1 OS=Drosophila melanogaster GN=Cyp4g1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 59/205 (28.78%), Postives = 108/205 (52.68%), Query Frame = 2
Query:  101 GGAAKPHFVDALLNLQE--EYELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQKAQEELDQVVGPN--RVMTEADFQNLHYLQCVVKESMRLHPPTPLMLPHKANADVKISG--YNVPKGSVVHVNVWAIGRDPADWKNPLEFRPERFLEEDIDMKGHDYRLLPFGSGRRICPG-----IQLGIXLVTSMLGHLLH 682
            G   +   +DA++ + +  + E ++  I+  +  ++  G DTT+    +A+  +  +  +Q K   E   + G N  R  T AD   + YL+ V+ E++RL+PP PL +  + + D+K++   Y VPKG+ V V  + + R P  + NP +F P+ FL E +  + H Y  +PF +G R C G     ++L + L T +  +++H
Sbjct:  319 GAKRRLALLDAMVEMAKNPDIEWNEKDIMDEVNTIMFEGHDTTSAGSSFALCMMGIHKDIQAKVFAEQKAIFGDNMLRDCTFADTMEMKYLERVILETLRLYPPVPL-IARRLDYDLKLASGPYTVPKGTTVIVLQYCVHRRPDIYPNPTKFDPDNFLPERMANR-HYYSFIPFSAGPRSCVGRKYAMLKLKVLLSTIVRNYIVH 521          
BLAST of CX290408 vs. ExPASy Swiss-Prot
Match: CP4D1_DROSI (Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4d1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 63/222 (28.38%), Postives = 112/222 (50.45%), Query Frame = 2
Query:   38 ERRDKLTKTIMAEHTLARQKGGGAA-KPHFVDALL-NLQEEYELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQKAQEELDQVVGPNRVMTEADFQ---NLHYLQCVVKESMRLHPPTPLMLPHKANADVKISGYNVPKGSVVHVNVWAIGRDPADWKNPLEFRPERFLEEDIDMKGHDYRLLPFGSGRRICPGIQLGIXLVTSMLGHLLHHF 688
            +RR++L +   ++ +       GA  K  F+D LL +  +E  LS+  I   +   +  G DTT+  + +    +  +P  Q+K  EE+  VVG N   T   ++    LHY+   VKE++R++P  PL L  K   D +I+G  +P G+ + ++   +GR    +  P  F+PERF       K + Y  +PF +G R C G +  +  + +++ ++L H+
Sbjct:  258 QRREELIREGSSQESSKDDADVGAKRKMAFLDILLQSTVDERPLSNLDIREEVDTFMFEGHDTTSSALMFFFYNIATHPEAQKKCFEEIRSVVG-NDKSTPVSYELLNQLHYVDLCVKETLRMYPSVPL-LGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPNSFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHY 477          
BLAST of CX290408 vs. ExPASy Swiss-Prot
Match: CP303_DROME (Probable cytochrome P450 303a1 OS=Drosophila melanogaster GN=Cyp303a1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 53/182 (29.12%), Postives = 92/182 (50.55%), Query Frame = 2
Query:  125 VDALLNLQEEYE-----LSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQKAQEELDQVVGPNRVMT-EADFQNLHYLQCVVKESMRLHPPTPLMLPHKANADVKISGYNVPKGSVVHVNVWAIGRDPADWKNPLEFRPERFLEEDIDMKGH---DYRLLPFGSGRRICPGIQLG 643
            +D+ L  Q+E        SD +++ +  +M +AG +TT  ++ +    L+  P +Q++A +E+ +VVG  R+     D   L Y + +  E++R+       +PH+A  D ++SGY +PK ++V      +  +P D+ +P  F P+R+L       GH        PFG GR  C G  LG
Sbjct:  278 MDSYLRAQDEGNDEKGMFSDQSLLAICLDMFLAGSETTNKSLGFCFMHLVLQPEIQERAFQEIKEVVGLERIPEWSRDRTKLPYCEAITLEAVRMFMLHTFGIPHRAVCDTRLSGYEIPKDTMVIACFRGMLINPVDFPDPESFNPDRYL-----FDGHLKLPEAFNPFGFGRHRCMGDLLG 454          
BLAST of CX290408 vs. ExPASy Swiss-Prot
Match: CP1A2_CHICK (Cytochrome P450 1A2 (Fragment) OS=Gallus gallus GN=CYP1A2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 43/134 (32.09%), Postives = 71/134 (52.99%), Query Frame = 2
Query:  167 DDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQKAQE-ELDQVVGPNRVMTEADFQNLHYLQCVVKESMRLHPPTPLMLPHKANADVKISGYNVPKGSVVHVNVWAIGRDPADWKNPLEFRPERFLEED 565
            ++ II L+ ++  AG DT T  + W++  L+  P  Q+K QE ELD  +G  R    ++   L Y +  + E++      P  +PH    D  ++G+++PK   V VN W +  +   W++P  FR ERFL +D
Sbjct:   41 NEKIINLVNDIFGAGFDTVTTALSWSLMYLVTQPHSQKKIQESELDTAIGRERRSWLSERSMLPYKEAFILETVPTWQFVPFTIPHSTTRDTTLNGFHIPKECCVFVNQWQVNHEAELWEDPFVFRTERFLTDD 174          
BLAST of CX290408 vs. ExPASy Swiss-Prot
Match: CP135_DROME (Probable cytochrome P450 313a5 OS=Drosophila melanogaster GN=Cyp313a5 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 57/197 (28.93%), Postives = 99/197 (50.25%), Query Frame = 2
Query:  107 AAKPHFVDALLNLQEEYELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQKAQEELDQVV--GPNRVMTEADFQNLHYLQCVVKESMRLHPPTPLMLPHKANADVKISGYNVPKGSVVHVNVWAIGRDPADW-KNPLEFRPERFLEEDIDMKGHDYRLLPFGSGRRICPGIQLGIXLVTSMLGHLLHHF 688
            +++P  +D +LNL    ELS D ++G   N+I A  DT +ITV   +  +   P+ Q    EEL +V   G     + AD + L  L  V+ E+MRL P  PL++   +++    +G+ +P+G  + ++++   R+   W      F P+ FL E+   +   Y  LPF  G++ C G +L +      L  +L ++
Sbjct:  259 SSEPALIDRILNLVRIGELSYDDVMGEFSNIIFAASDTLSITVNNVLILMAMFPKYQDNVFEELAEVFPSGGEFEASHADLEKLVKLDRVLHETMRLIPAVPLLIRQTSHSIQLSNGFYIPEGVTLMIDIFHTHRNKDIWGPQANAFNPDNFLPENKRAR-PPYSYLPFSKGKKTCLGWKLSLISAKLALAKILRNY 454          
BLAST of CX290408 vs. ExPASy Swiss-Prot
Match: C88A1_MAIZE (Cytochrome P450 88A1 OS=Zea mays GN=CYP88A1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 64/214 (29.91%), Postives = 104/214 (48.60%), Query Frame = 2
Query:   65 IMAEHTLARQKGGGAAKPHFVDALLNLQEEY--ELSDDTIIGLLWNMIIAGMDTTTITVEWAMAELIKNPRVQQKAQEELDQVV----GPNRVMTEADFQNLHYLQCVVKESMRLHPPTPLMLPHKANADVKISGYNVPKGSVVHVNVWAIGRDPADWKNPLEFRPERFLEEDIDMKGHDYR---LLPFGSGRRICPGIQLGIXLVTSMLGHLL 679
            ++ E   AR KG        +D L+  Q+E    L DD II +L   + AG +++     WA   L +NP +  +A+ E + ++       R +T  DF+ + YL  V+ E++RL   + +    +A  DV ++GY +PKG  V +   ++  DP  + +P +F P R+       +GH  R    L FG G R+CPG  L    ++  L H L
Sbjct:  279 VLDERRAARAKGVSGGGVDMMDRLIEAQDERGRHLDDDEIIDVLVMYLNAGHESSGHITMWATVFLQENPDMFARAKAEQEAIMRSIPSSQRGLTLRDFRKMEYLSQVIDETLRLVNISFVSF-RQATRDVFVNGYLIPKGWKVQLWYRSVHMDPQVYPDPTKFDPSRW-------EGHSPRAGTFLAFGLGARLCPGNDLAKLEISVFLHHFL 484          
BLAST of CX290408 vs. ExPASy Swiss-Prot
Match: C6A19_DROME (Probable cytochrome P450 6a19 OS=Drosophila melanogaster GN=Cyp6a19 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 2
Query:  122 FVDALLNLQEEYELSDDTIIGLLWNMI--------IAGMDTTTITVEWAMAELIKNPRVQQKAQEELDQVVGPNRVMTEAD-FQNLHYLQCVVKESMRLHPPTPLMLPHKANADVKISGYNVPK-----GSVVHVNVWAIGRDPADWKNPLEFRPERFLEEDIDMKGHDYRLLPFGSGRRICPGIQLGIXLVTSMLGHLLHHF 688
            F+D L++++++Y+  D    GL +N +        +AG +  + T+ + + EL  N  VQ K + E+D V+       E D  Q+L Y++ V+ ES+R HP    ++ H A    K   ++ PK     G+ V V+   I  DP  +  P +F PERF EE +  K      LPFG+G R C G++ G   V   L  L+H+F
Sbjct:  270 FMDTLIDMKQQYDKGDKEN-GLAFNEVAAQAFVFFLAGFEAGSTTMGFTLYELACNQDVQDKLRAEIDSVLERYNGKLEYDSMQDLFYMEKVINESLRKHP----VVAHLARIATKPYQHSNPKYFIEAGTGVLVSTLGIHHDPEFYPEPEKFIPERFDEEQV-KKRPTCAFLPFGAGPRNCIGLRFGRMQVIIGLALLIHNF 466          
The following BLAST results are available for this feature:
BLAST of CX290408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CP4CA_MOUSE1.384e-1628.25Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a ... [more]
CP4A4_RABIT1.384e-1628.25Cytochrome P450 4A4 OS=Oryctolagus cuniculus GN=CY... [more]
C12C1_DROME1.384e-1629.32Probable cytochrome P450 12c1, mitochondrial OS=Dr... [more]
CP4G1_DROME1.808e-1628.78Cytochrome P450 4g1 OS=Drosophila melanogaster GN=... [more]
CP4D1_DROSI1.808e-1628.38Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4... [more]
CP303_DROME1.808e-1629.12Probable cytochrome P450 303a1 OS=Drosophila melan... [more]
CP1A2_CHICK1.808e-1632.09Cytochrome P450 1A2 (Fragment) OS=Gallus gallus GN... [more]
CP135_DROME1.808e-1628.93Probable cytochrome P450 313a5 OS=Drosophila melan... [more]
C88A1_MAIZE1.808e-1629.91Cytochrome P450 88A1 OS=Zea mays GN=CYP88A1 PE=2 S... [more]
C6A19_DROME1.808e-1632.02Probable cytochrome P450 6a19 OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionC02023H05SK IF1 Citrus clementina cDNA clone C02023H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290408 ID=CX290408; Name=CX290408; organism=Citrus clementina; type=EST; length=715bp
GTTTCCACTAGAGGAAGAGAAATATGTGAAGCACAATGAACGCAGAGATA
AGCTTACGAAAACCATAATGGCAGAACATACCCTTGCTCGTCAAAAGGGT
GGAGGAGCTGCTAAGCCACACTTCGTTGATGCGTTGCTCAATTTGCAAGA
GGAATATGAACTTAGTGATGATACAATTATTGGGCTACTTTGGAACATGA
TAATAGCAGGCATGGACACCACAACAATAACTGTAGAATGGGCAATGGCA
GAGCTCATAAAAAACCCTAGAGTGCAACAAAAAGCTCAGGAAGAACTAGA
CCAAGTAGTAGGCCCTAATCGCGTCATGACAGAAGCAGACTTTCAAAACC
TGCACTATCTCCAGTGCGTGGTCAAAGAATCAATGCGGCTACACCCACCA
ACGCCTCTAATGCTGCCCCACAAAGCCAACGCCGATGTAAAAATCAGCGG
CTACAACGTCCCGAAAGGATCAGTCGTACATGTAAACGTTTGGGCCATAG
GCAGAGACCCTGCTGATTGGAAAAACCCGTTGGAATTTAGGCCTGAGAGG
TTCTTAGAGGAGGACATTGACATGAAAGGACACGATTATCGATTGTTACC
ATTTGGTTCGGGGAGAAGAATTTGTCCCGGCATACAACTTGGCATANATT
TAGTGACCTCGATGTTGGGTCATCTTTTGCACCATTTTTGGTGGGCACCG
GCTAAAGGAGTGAAG
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