CX290428
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26 Identity = 76/150 (50.67%), Postives = 95/150 (63.33%), Query Frame = 1 Query: 7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDTFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 426 E LQR+QRNLLGE+LG L KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E Q++ A GY ++ P G+ FFH+LE EPTLQIG+ P S VTA +M WLP Sbjct: 105 ENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23 Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 1 Query: 7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH--ALECEPTLQIGYQPA--DPISVVTAGPSLNNYMQGWL 423 + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +L E + P+ + + GD FF L C LQIGY A D ++ T+ +++ + QGW+ Sbjct: 102 DVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE----SCASFRPNWD--------VRQPGDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWM 232
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20 Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = 1 Query: 7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--------CGYGLKPAQPQGDTFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 420 E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R +TQ M++ + +L+ KE+ L E NK LK +L + ++ + +D G + AQP D ++CEPTLQIGY + A+P S G NN++ GW Sbjct: 103 ECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEA--EADSSNCRSAIQDSWVHGTVVSGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20 Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 1 Query: 7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 357 E LQ +QRNLLGE+L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E N L + S +D G ++ + HA+ C+P+L IGYQ Sbjct: 104 EFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20 Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 1 Query: 7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 357 E LQ +QRNLLGE+L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E N L + S +D G ++ + HA+ C+P+L IGYQ Sbjct: 104 EFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19 Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 1 Query: 7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVN--TLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ----PADPISV---VTAGPSLNNYMQGWL 423 EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R +TQ M++ + EL+ KE+ L E N+ LK +L +EG N +Q A+ A Q A++ EPTLQIGY PA+ ++ + NN+M GW+ Sbjct: 101 EALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHSAAMDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWV 249
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17 Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1 Query: 7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 354 E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E N L ++ S +P QG H + + +LQIGY Sbjct: 100 EFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17 Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1 Query: 7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 354 E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E N L ++ S +P QG H + + +LQIGY Sbjct: 100 EFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 9.872e-17 Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 1 Query: 7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----------GYQVNTLQLNPSAEDCGYGLKPAQP--QGDTFFHALECEPTLQI----GYQPADPISVVTAGPSLNNYMQGWL 423 E LQ SQR+LLGEEL ++ ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++L + G Q + G + P Q FF L+ LQ+ + PA+ + T ++N + GW+ Sbjct: 103 EILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16 Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYG-------LKPAQPQGDTFFHALECEPTLQIGYQPADP 369 E LQ+SQRNLLGE+L PL + ELE LE Q+ +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++L E P +C G PQ + FF AL + + PA P Sbjct: 103 EILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQALGLH-AVDVNQPPAPP 229 The following BLAST results are available for this feature:
BLAST of CX290428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290428 ID=CX290428; Name=CX290428; organism=Citrus clementina; type=EST; length=685bpback to top |