CX290428

Overview
NameCX290428
Unique NameCX290428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 76/150 (50.67%), Postives = 95/150 (63.33%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDTFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 426
            E LQR+QRNLLGE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG+ P     S VTA      +M  WLP
Sbjct:  105 ENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH--ALECEPTLQIGYQPA--DPISVVTAGPSLNNYMQGWL 423
            + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +L E    +     P+ +         +  GD FF    L C   LQIGY  A  D ++  T+  +++ + QGW+
Sbjct:  102 DVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE----SCASFRPNWD--------VRQPGDGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWM 232          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--------CGYGLKPAQPQGDTFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 420
            E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +L    + ++     + +D         G  +  AQP  D     ++CEPTLQIGY      + A+P S    G   NN++ GW
Sbjct:  103 ECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEA--EADSSNCRSAIQDSWVHGTVVSGGRVLNAQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 357
            E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:  104 EFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 54/117 (46.15%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 357
            E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:  104 EFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVN--TLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ----PADPISV---VTAGPSLNNYMQGWL 423
            EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +L +EG   N   +Q    A+        A  Q      A++ EPTLQIGY     PA+  ++        + NN+M GW+
Sbjct:  101 EALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHSAAMDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWV 249          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 354
            E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E    N L ++       S        +P   QG    H  + + +LQIGY
Sbjct:  100 EFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN------PSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGY 354
            E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E    N L ++       S        +P   QG    H  + + +LQIGY
Sbjct:  100 EFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGY 221          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.872e-17
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----------GYQVNTLQLNPSAEDCGYGLKPAQP--QGDTFFHALECEPTLQI----GYQPADPISVVTAGPSLNNYMQGWL 423
            E LQ SQR+LLGEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++L +          G      Q     +  G     + P  Q   FF  L+    LQ+     + PA+  +  T   ++N +  GW+
Sbjct:  103 EILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYG-------LKPAQPQGDTFFHALECEPTLQIGYQPADP 369
            E LQ+SQRNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++L E          P   +C  G            PQ + FF AL     + +   PA P
Sbjct:  103 EILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQALGLH-AVDVNQPPAPP 229          
The following BLAST results are available for this feature:
BLAST of CX290428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
MADS8_ORYSJ1.052e-2650.67MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA2.426e-2344.06MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MAD17_ORYSJ1.472e-2040.13MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MADS5_ORYSJ7.304e-2046.15MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI7.304e-2046.15MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS6_ORYSJ3.625e-1940.94MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MADS1_ORYSJ1.166e-1743.44MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI1.166e-1743.44MADS-box transcription factor 1 OS=Oryza sativa su... [more]
AGL3_ARATH9.872e-1735.48Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD34_ORYSJ2.199e-1642.19MADS-box transcription factor 34 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02024B02SK IF1 Citrus clementina cDNA clone C02024B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290428 ID=CX290428; Name=CX290428; organism=Citrus clementina; type=EST; length=685bp
GAGGATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACT
TGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATA
TGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACC
CTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGAC
CCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGA
ATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAG
GGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGG
ATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGA
ATAATTACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTAC
CAGTCAATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCT
TTGTAAGCAACCCTATTCAGTGACTAGGAACACGCAATCATAAGGATTTA
TTATAATAACTCTACAGTGATCCTGCACTTTAGGGAAACTGATGACGATA
TATAGCTATGTTGTGTGTGCGTGTATTTTCAATCACCGCGCTTATCTTTA
TTTACAAAGCCTTGTTTGAGAAAAAAAAAAAAAAA
back to top