CX290428

Overview
NameCX290428
Unique NameCX290428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA---DPISVVTAG 390
            E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++ L+E  +V   Q+           +P      + F   E  PT  I   PA   + I  V AG
Sbjct:  103 ETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA---DPISVVTAG 390
            E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++ L+E  +V   Q+           +P      + F   E  PT  I   PA   + I  V AG
Sbjct:  103 ETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQVQWDQ------TQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAG 227          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 56/153 (36.60%), Postives = 84/153 (54.90%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVNTLQ---LNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLN--------NYMQGWL 423
            E+L R+ RNLLGE+LG +  KEL++LERQL+ +L   R  +TQ M++ + +L+ KE+ L + NK LK +   EG+   T Q    N +A   G       P   +  + L+C  EP LQIG+Q      V   G S++        N++QGW+
Sbjct:  101 ESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKTFQDLWANSAASVAGDPNNSEFPVEPSHPNVLDCNTEPFLQIGFQ--QHYYVQGEGSSVSKSNVAGETNFVQGWV 251          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 46/130 (35.38%), Postives = 76/130 (58.46%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNP-SAEDCGYGLKPAQPQGD---TFFHALECEPTLQIG--YQPADPISV 378
            E L+R+QR+ LGE+L  ++SKEL++LE+QLD +LK IRS + Q M D++ ELQ KE+ + E N  L +++ E  ++   Q      ++ G+ + P  P       +  + +  P L +G  YQ  DP+ +
Sbjct:  103 ELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNHGHNMPPPPPPQQIQHPYMLSHQPSPFLNMGGLYQEEDPMEM 232          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 267
            +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++ +    + N   +N + E+
Sbjct:  103 DALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREE 189          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 267
            +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++ +    + N   +N + E+
Sbjct:  103 DALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREE 189          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL------KQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFH------ALECEPTLQIG--YQPAD 366
            E L+R+QR+ LGEEL P++ K+L++LE+QL+ +LK IRS + Q M ++L  LQ KE+ + E N  L      ++ ++   Q    QLN S +D         PQ   F H      A +  P L +G  YQ  D
Sbjct:  105 ELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTKQTQCEQLNRSVDDV--------PQPQPFQHPHLYMIAHQTSPFLNMGGLYQEED 230          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 43/132 (32.58%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNP-SAEDCGYGLKPAQPQGD-----TFFHALECEPTLQIG--YQPADPISV 378
            E L+R+QR+ LGE+L  ++ KEL++LE+QLD +LK IR+ + Q M +++ ELQ KE+ + E N  L +++ E  ++   Q      ++ G+ + P  P         +  + +  P L +G  YQ  DP+++
Sbjct:  103 ELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNQGHNMPPPLPPQQHQIQHPYMLSHQPSPFLNMGGLYQEDDPMAM 234          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 222
            E +Q+  ++L+GE+L  LN KEL+ LE+QL+ SLK I S ++  ML++++ELQ KE+ L E NK L++ L+E
Sbjct:  103 ETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVE 174          
BLAST of CX290428 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    7 EALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQ 300
            E L++++RN +GE+L  L+ KEL+SLE QL  ++K IRS + Q M ++++ LQ K+++L + N  L +++ E  + NT+        C       QPQ
Sbjct:  103 EVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKE-REKNTVHQEVQLIQCSNNSSILQPQ 199          
The following BLAST results are available for this feature:
BLAST of CX290428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
MAD14_ORYSJ3.176e-1538.93MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI3.176e-1538.93MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL6_ARATH9.240e-1536.60Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AP1_SINAL5.989e-1435.38Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
MAD18_ORYSJ2.516e-1242.53MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI2.516e-1242.53MADS-box transcription factor 18 OS=Oryza sativa s... [more]
CAL_ARATH2.516e-1236.57Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AP1_ARATH2.516e-1232.58Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD15_ORYSJ9.562e-1247.22MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AGL8_SINAL8.094e-1135.71Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]

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Properties
Property NameValue
Genbank descriptionC02024B02SK IF1 Citrus clementina cDNA clone C02024B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290428 ID=CX290428; Name=CX290428; organism=Citrus clementina; type=EST; length=685bp
GAGGATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACT
TGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATA
TGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACC
CTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGAC
CCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGA
ATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAG
GGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGG
ATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGA
ATAATTACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTAC
CAGTCAATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCT
TTGTAAGCAACCCTATTCAGTGACTAGGAACACGCAATCATAAGGATTTA
TTATAATAACTCTACAGTGATCCTGCACTTTAGGGAAACTGATGACGATA
TATAGCTATGTTGTGTGTGCGTGTATTTTCAATCACCGCGCTTATCTTTA
TTTACAAAGCCTTGTTTGAGAAAAAAAAAAAAAAA
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