CX290458

Overview
NameCX290458
Unique NameCX290458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_RAT (40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 5.598e-53
Identity = 107/140 (76.43%), Postives = 119/140 (85.00%), Query Frame = 2
Query:   74 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            M+ RK ++ KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKDKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_PODCA (40S ribosomal protein S14 OS=Podocoryne carnea GN=RPS14 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.311e-53
Identity = 106/140 (75.71%), Postives = 118/140 (84.29%), Query Frame = 2
Query:   74 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            M+ RK + PKEE V +LGP V DGE+VFGVAHIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ RCKE+GITALH+KLRA            AQSALRALARSGMKIGRIEDVTPIP+D T
Sbjct:    1 MAPRKGKAPKEEQVISLGPQVADGENVFGVAHIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCT 140          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_DROME (40S ribosomal protein S14 OS=Drosophila melanogaster GN=RpS14a PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.352e-51
Identity = 105/140 (75.00%), Postives = 116/140 (82.86%), Query Frame = 2
Query:   74 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            M+ RK +  KEE  V LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14A_DROYA (40S ribosomal protein S14a OS=Drosophila yakuba GN=RpS14a PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.352e-51
Identity = 105/140 (75.00%), Postives = 116/140 (82.86%), Query Frame = 2
Query:   74 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            M+ RK +  KEE  V LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_NEUCR (40S ribosomal protein S14 OS=Neurospora crassa GN=rps-14 PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.167e-50
Identity = 101/139 (72.66%), Postives = 113/139 (81.29%), Query Frame = 2
Query:   74 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            M  +K   P +EN++LGP +R+GE VFGVA IFASFNDTF+HVTDLSGRET  R+ GG+KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIK+RA            AQSALRALARSGMKIGRIEDVTP P+DST
Sbjct:    1 MPPKKAARPAQENISLGPQIREGELVFGVARIFASFNDTFVHVTDLSGRETTDRVIGGIKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKIRATGGNGTRTPGPGAQSALRALARSGMKIGRIEDVTPTPSDST 139          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_AEDAE (40S ribosomal protein S14 OS=Aedes aegypti GN=RpS14 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.167e-50
Identity = 103/140 (73.57%), Postives = 117/140 (83.57%), Query Frame = 2
Query:   74 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            M+ RK +  KEE  V+LGP VR+GE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKNKTVKEEVQVSLGPQVREGEIVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGMKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14B_ANOGA (40S ribosomal protein S14b OS=Anopheles gambiae GN=RpS14b PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.167e-50
Identity = 103/137 (75.18%), Postives = 115/137 (83.94%), Query Frame = 2
Query:   83 RKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            RK +  KEE  V+LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:    5 RKNKVAKEEVQVSLGPQVRDGEVVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGMKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 141          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14A_ANOGA (40S ribosomal protein S14a OS=Anopheles gambiae GN=RpS14a PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.525e-50
Identity = 103/137 (75.18%), Postives = 115/137 (83.94%), Query Frame = 2
Query:   83 RKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            RK +  KEE  V+LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:    5 RKNKVVKEEVQVSLGPQVRDGEVVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGMKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 141          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_BOMMO (40S ribosomal protein S14 OS=Bombyx mori GN=RpS14 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.882e-50
Identity = 103/140 (73.57%), Postives = 114/140 (81.43%), Query Frame = 2
Query:   74 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            M+ RK +  KEE  VTLGP    GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTP+P+DST
Sbjct:    1 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPVPSDST 140          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_CAEEL (40S ribosomal protein S14 OS=Caenorhabditis elegans GN=rps-14 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.686e-49
Identity = 97/141 (68.79%), Postives = 116/141 (82.27%), Query Frame = 2
Query:   68 VAMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            +A +R+   + ++  V+LGP  ++GE +FGVAHIFASFNDTF+H+TD+SGRET+VR+TGGMKVKADRDESSPYAAMLAAQDV+ RCK+LGI ALHIKLRA            AQSALRALAR+GMKIGRIEDVTPIP+D T
Sbjct:    1 MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141          
The following BLAST results are available for this feature:
BLAST of CX290458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS14_RAT5.598e-5376.4340S ribosomal protein S14 OS=Rattus norvegicus GN=... [more]
RS14_PODCA7.311e-5375.7140S ribosomal protein S14 OS=Podocoryne carnea GN=... [more]
RS14_DROME2.352e-5175.0040S ribosomal protein S14 OS=Drosophila melanogast... [more]
RS14A_DROYA2.352e-5175.0040S ribosomal protein S14a OS=Drosophila yakuba GN... [more]
RS14_NEUCR1.167e-5072.6640S ribosomal protein S14 OS=Neurospora crassa GN=... [more]
RS14_AEDAE1.167e-5073.5740S ribosomal protein S14 OS=Aedes aegypti GN=RpS1... [more]
RS14B_ANOGA1.167e-5075.1840S ribosomal protein S14b OS=Anopheles gambiae GN... [more]
RS14A_ANOGA1.525e-5075.1840S ribosomal protein S14a OS=Anopheles gambiae GN... [more]
RS14_BOMMO9.882e-5073.5740S ribosomal protein S14 OS=Bombyx mori GN=RpS14 ... [more]
RS14_CAEEL1.686e-4968.7940S ribosomal protein S14 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC02024D08SK IF1 Citrus clementina cDNA clone C02024D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290458 ID=CX290458; Name=CX290458; organism=Citrus clementina; type=EST; length=730bp
GATTCGGCCGAGGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATC
AACTCTCCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCT
AAGGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGT
ATTTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATG
TGACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATG
AAGGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGC
AGCACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTC
ATATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCA
GGTGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGG
CCGCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGG
GTGGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATA
ACGTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAG
ATGCAAGACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGG
ATTCCTTTGTGTTAGCCTTTCCGATCAATTAAGTTTTATACGGTGGCAGA
CTAATCATTTCTCCATGAGTTTCTGAATTT
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