CX290458

Overview
NameCX290458
Unique NameCX290458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_PROCL (40S ribosomal protein S14 OS=Procambarus clarkii GN=RPS14 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.422e-48
Identity = 98/140 (70.00%), Postives = 111/140 (79.29%), Query Frame = 2
Query:   74 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            M+ RK +  KEE  V LGP V DGE VF V HI+AS+NDTF+HVTDLSGRET+VRITGG KVKADRDESSPYAAMLAAQDV+++CK LGI  LHIK+RA             QSALRALAR+GMKIGRIEDVTP+P+DST
Sbjct:    1 MAPRKGKVQKEEVQVQLGPQVLDGEKVFAVCHIYASYNDTFVHVTDLSGRETIVRITGGQKVKADRDESSPYAAMLAAQDVAEKCKSLGINCLHIKIRATGGNKTKTPGPGGQSALRALARAGMKIGRIEDVTPVPSDST 140          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_SCHPO (40S ribosomal protein S14 OS=Schizosaccharomyces pombe GN=rps14a PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.691e-47
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 2
Query:  119 LGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            +GP +R GE VFGVAHIFASFNDTF+H+TDL+G+ET+VR+TGGMKVK DRDESSPYAAMLAAQD + +CKE+GITALHIK+RA            AQ+ALRALAR+GM+IGRIEDVTPIPTDST
Sbjct:    5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_DICDI (40S ribosomal protein S14 OS=Dictyostelium discoideum GN=rps14 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.290e-45
Identity = 95/135 (70.37%), Postives = 105/135 (77.78%), Query Frame = 2
Query:   86 KTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            K  E     +  GP+    E VFGVAHIFASFNDTF+HVTDLS +ET+VR+TGGMKVK DRDESSPYAA +AAQDV+ RCKELG+TALHIKLRA            AQSALRALARSGM+IGRIEDVTPIPTDST
Sbjct:   11 KVVEALSAKIPCGPS----ELVFGVAHIFASFNDTFVHVTDLSSKETIVRVTGGMKVKTDRDESSPYAATMAAQDVALRCKELGVTALHIKLRATGGNGSKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDST 141          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_KLULA (40S ribosomal protein S14 OS=Kluyveromyces lactis GN=RPS14 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.103e-44
Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 2
Query:  134 RDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            +D   VFGVA IFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+HIK+RA             Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:    8 KDNSQVFGVARIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 126          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14B_YEAST (40S ribosomal protein S14-B OS=Saccharomyces cerevisiae GN=RPS14B PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.357e-43
Identity = 84/119 (70.59%), Postives = 100/119 (84.03%), Query Frame = 2
Query:  134 RDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            RD   VFGVA I+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+H+K+RA             Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:    9 RDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 127          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14A_YEAST (40S ribosomal protein S14-A OS=Saccharomyces cerevisiae GN=RPS14A PE=1 SV=5)

HSP 1 Score: 175.637 bits (444), Expect = 2.357e-43
Identity = 84/119 (70.59%), Postives = 100/119 (84.03%), Query Frame = 2
Query:  134 RDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            RD   VFGVA I+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+H+K+RA             Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:    8 RDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 126          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_CANAL (40S ribosomal protein S14 OS=Candida albicans GN=RPS14 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.021e-43
Identity = 86/114 (75.44%), Postives = 98/114 (85.96%), Query Frame = 2
Query:  149 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            VFGVA IFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+HIKLRA             QSALRALARSG++IGRIEDVTP+P+DST
Sbjct:   10 VFGVARIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKLRATGGTKTKTPGPGGQSALRALARSGLRIGRIEDVTPVPSDST 123          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_TRYBB (40S ribosomal protein S14 OS=Trypanosoma brucei brucei GN=RPS14 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.958e-43
Identity = 86/130 (66.15%), Postives = 101/130 (77.69%), Query Frame = 2
Query:  101 KEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            K+E    G +    + V+GV HI+ASFNDTF+HVTD+SGRET  ++TGGMKVKADRDESSPYAAM+AAQDV  RCKE GI ALH+K+RA            AQ+ALRALAR+GMKIGRIEDVTP+PTDST
Sbjct:    4 KQEVKYYGSSAGKDQLVYGVVHIYASFNDTFVHVTDMSGRETFCKVTGGMKVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRATGGVGTKSPGPGAQAALRALARAGMKIGRIEDVTPVPTDST 133          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_TORRU (40S ribosomal protein S14 OS=Tortula ruralis GN=RPS14 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.170e-42
Identity = 90/114 (78.95%), Postives = 98/114 (85.96%), Query Frame = 2
Query:  149 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            VFGVAHIFASFNDTF+HVTDLSG+ET + +TGGMKVKADRDE+SPYAAMLAAQDV+QRCKELGITALHI +RA            AQS LRALARSGM+IGRIEDVTPIPTDST
Sbjct:   11 VFGVAHIFASFNDTFVHVTDLSGKETSLVLTGGMKVKADRDEASPYAAMLAAQDVAQRCKELGITALHINVRATGGNKTKTPGPGAQS-LRALARSGMRIGRIEDVTPIPTDST 123          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_AERPE (30S ribosomal protein S11P OS=Aeropyrum pernix GN=rps11p PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.070e-31
Identity = 66/113 (58.41%), Postives = 86/113 (76.11%), Query Frame = 2
Query:  152 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            +GVAHI++SFN+T +H+TDL+G ET+ R+TGGM VKADR++ SPYAAM+AA   +Q+  E GI A+HIK+RA            AQ+A+RALAR+G  IGRIEDVTPIP D+T
Sbjct:   10 WGVAHIYSSFNNTHVHITDLTGAETVARVTGGMVVKADREKPSPYAAMIAASRAAQKAMERGIAAIHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTT 122          
The following BLAST results are available for this feature:
BLAST of CX290458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS14_PROCL5.422e-4870.0040S ribosomal protein S14 OS=Procambarus clarkii G... [more]
RS14_SCHPO2.691e-4773.3940S ribosomal protein S14 OS=Schizosaccharomyces p... [more]
RS14_DICDI3.290e-4570.3740S ribosomal protein S14 OS=Dictyostelium discoid... [more]
RS14_KLULA8.103e-4472.2740S ribosomal protein S14 OS=Kluyveromyces lactis ... [more]
RS14B_YEAST2.357e-4370.5940S ribosomal protein S14-B OS=Saccharomyces cerev... [more]
RS14A_YEAST2.357e-4370.5940S ribosomal protein S14-A OS=Saccharomyces cerev... [more]
RS14_CANAL4.021e-4375.4440S ribosomal protein S14 OS=Candida albicans GN=R... [more]
RS14_TRYBB8.958e-4366.1540S ribosomal protein S14 OS=Trypanosoma brucei br... [more]
RS14_TORRU1.170e-4278.9540S ribosomal protein S14 OS=Tortula ruralis GN=RP... [more]
RS11_AERPE2.070e-3158.4130S ribosomal protein S11P OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02024D08SK IF1 Citrus clementina cDNA clone C02024D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290458 ID=CX290458; Name=CX290458; organism=Citrus clementina; type=EST; length=730bp
GATTCGGCCGAGGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATC
AACTCTCCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCT
AAGGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGT
ATTTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATG
TGACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATG
AAGGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGC
AGCACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTC
ATATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCA
GGTGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGG
CCGCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGG
GTGGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATA
ACGTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAG
ATGCAAGACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGG
ATTCCTTTGTGTTAGCCTTTCCGATCAATTAAGTTTTATACGGTGGCAGA
CTAATCATTTCTCCATGAGTTTCTGAATTT
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