CX290458

Overview
NameCX290458
Unique NameCX290458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_GEOMG (30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  155 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            GVAHI A+FN+T I +TD +G        GG   K  R +S+P+AA +AA+D +++ ++ G+ ++ + ++              +SALRAL  +G  +  I DVTPIP
Sbjct:   21 GVAHIQATFNNTIITITDPAGNVVAWSSAGGKGFKGSR-KSTPFAAQVAAEDCAKKAQDHGMRSVEVYVKG--------PGSGRESALRALQAAGFHVNFIRDVTPIP 119          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_AZOVD (30S ribosomal protein S11 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 2
Query:  149 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_ACTPJ (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  155 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_ACTP7 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  155 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_ACTP2 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  155 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
The following BLAST results are available for this feature:
BLAST of CX290458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS11_GEOMG9.042e-1136.1130S ribosomal protein S11 OS=Geobacter metalliredu... [more]
RS11_AZOVD9.042e-1137.2730S ribosomal protein S11 OS=Azotobacter vinelandi... [more]
RS11_ACTPJ9.042e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]
RS11_ACTP79.042e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]
RS11_ACTP29.042e-1136.1130S ribosomal protein S11 OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank descriptionC02024D08SK IF1 Citrus clementina cDNA clone C02024D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290458 ID=CX290458; Name=CX290458; organism=Citrus clementina; type=EST; length=730bp
GATTCGGCCGAGGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATC
AACTCTCCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCT
AAGGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGT
ATTTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATG
TGACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATG
AAGGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGC
AGCACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTC
ATATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCA
GGTGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGG
CCGCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGG
GTGGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATA
ACGTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAG
ATGCAAGACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGG
ATTCCTTTGTGTTAGCCTTTCCGATCAATTAAGTTTTATACGGTGGCAGA
CTAATCATTTCTCCATGAGTTTCTGAATTT
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