CX290458

Overview
NameCX290458
Unique NameCX290458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_HALSA (30S ribosomal protein S11P OS=Halobacterium salinarium GN=rps11p PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.100e-24
Identity = 55/113 (48.67%), Postives = 79/113 (69.91%), Query Frame = 2
Query:  152 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            +G+AH+ ASFN+T + VTD +G ETL + +GG  VK +RDE+SPYAAM  A+ +++   + GI  +H+++R             AQ+A+RALAR+G++IGRIEDVTPIP D T
Sbjct:    7 WGIAHVHASFNNTIMTVTDQTGAETLAKSSGGSVVKQNRDEASPYAAMQMAEQLAEEVLDQGIEKVHVRVRGPGGNLQRSPGPGAQAAIRALARAGLEIGRIEDVTPIPHDGT 119          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_METS3 (30S ribosomal protein S11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps11p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 54/113 (47.79%), Postives = 80/113 (70.80%), Query Frame = 2
Query:  152 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            +G+A+I++S+N+T I VTD++G ET+ + +GG  V+ADR ++SP+AAM AA  ++   KE G   LHI++RA            AQ+ +RALAR+G+KIG+IED+TPIP D T
Sbjct:    7 WGIANIYSSYNNTIITVTDITGAETISQWSGGKVVRADRQQASPFAAMAAATRIADDAKEKGFVGLHIRVRAPGGNGHRSPGPGAQATIRALARAGIKIGKIEDITPIPHDGT 119          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_PYRCJ (30S ribosomal protein S11P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.201e-24
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  152 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 487
            +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D+
Sbjct:   18 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHDT 129          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_PYRIL (30S ribosomal protein S11P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps11p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.181e-24
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  152 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 487
            +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D+
Sbjct:   16 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLIIGRIEDVTPIPHDT 127          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_METS5 (30S ribosomal protein S11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps11p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.181e-24
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  152 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 487
            +G+A I+AS N+T I +TD++G E + + +GGM VKADR++ SPYAAMLAA   +    + G+ A+HIK+RA            AQ A+R+LARSG  IGRIEDVTPIP D+
Sbjct:    9 WGLARIYASQNNTIITITDITGAEVISKASGGMMVKADREKPSPYAAMLAANKAASDALDKGLMAIHIKVRAPGGAGPKTPGPGAQPAIRSLARSGFIIGRIEDVTPIPHDT 120          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_HALMA (30S ribosomal protein S11P OS=Haloarcula marismortui GN=rps11p PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.460e-24
Identity = 53/116 (45.69%), Postives = 79/116 (68.10%), Query Frame = 2
Query:  143 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            E ++G+AH+ ASFN+T I +TD +G ETL + +GG  VK +RDE+SPYAAM  A+ V+++  + G+  + +++R             AQ+ +RALAR+G++IGRIEDVTP P D T
Sbjct:    6 EDIWGIAHVHASFNNTIITITDQTGAETLAKSSGGTVVKQNRDEASPYAAMQMAEVVAEKALDRGVEGVDVRVRGPGGNLQTSPGPGAQATIRALARAGLEIGRIEDVTPTPHDGT 121          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_THEPD (30S ribosomal protein S11P OS=Thermofilum pendens (strain Hrk 5) GN=rps11p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.314e-24
Identity = 61/142 (42.96%), Postives = 84/142 (59.15%), Query Frame = 2
Query:   62 SSVAMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 487
            S  A  RR+TRE +                 G+A I+AS+N+T IH+TDLSG ET+   +GGM  KADRD+ SP+AAM AA   ++   + GI  +H+K++A            A  A+RAL R+G+ + RIEDVTP+PTDS
Sbjct:   15 SGKAEERRETREKQVRGDV------------GIAWIYASYNNTIIHITDLSGAETIAFASGGMVAKADRDKPSPWAAMQAAARAAKIALDKGIRVVHVKIKAPGGYGPKTPGPGAGPAIRALVRAGLMVDRIEDVTPLPTDS 144          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_PYRAR (30S ribosomal protein S11P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps11p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2
Query:  152 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 484
            +G+A I++S N+T I +TDL+G ET+ R++GG  V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D
Sbjct:   15 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLAMARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 125          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_SULAC (30S ribosomal protein S11P OS=Sulfolobus acidocaldarius GN=rps11p PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  152 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 487
            +G A I+AS N+T I +TD++G E + + +GGM VKADR++ SPYAAMLAA   +    + GI+A+HIK+RA            AQ A+RALAR+G  IGRIEDVTP+P D+
Sbjct:    9 WGNARIYASQNNTIITITDITGAEIISKASGGMVVKADREKPSPYAAMLAANKAANDAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPLPHDT 120          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_PYRAE (30S ribosomal protein S11P OS=Pyrobaculum aerophilum GN=rps11p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2
Query:  152 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 484
            +G+A I++S N+T I +TDL+G ET+ R++GG  V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D
Sbjct:   10 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 120          
The following BLAST results are available for this feature:
BLAST of CX290458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS11_HALSA1.100e-2448.6730S ribosomal protein S11P OS=Halobacterium salina... [more]
RS11_METS31.877e-2447.7930S ribosomal protein S11P OS=Methanobrevibacter s... [more]
RS11_PYRCJ3.201e-2450.8930S ribosomal protein S11P OS=Pyrobaculum calidifo... [more]
RS11_PYRIL4.181e-2450.8930S ribosomal protein S11P OS=Pyrobaculum islandic... [more]
RS11_METS54.181e-2450.8930S ribosomal protein S11P OS=Metallosphaera sedul... [more]
RS11_HALMA5.460e-2445.6930S ribosomal protein S11P OS=Haloarcula marismort... [more]
RS11_THEPD9.314e-2442.9630S ribosomal protein S11P OS=Thermofilum pendens ... [more]
RS11_PYRAR1.216e-2350.4530S ribosomal protein S11P OS=Pyrobaculum arsenati... [more]
RS11_SULAC1.589e-2350.8930S ribosomal protein S11P OS=Sulfolobus acidocald... [more]
RS11_PYRAE1.589e-2350.4530S ribosomal protein S11P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionC02024D08SK IF1 Citrus clementina cDNA clone C02024D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290458 ID=CX290458; Name=CX290458; organism=Citrus clementina; type=EST; length=730bp
GATTCGGCCGAGGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATC
AACTCTCCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCT
AAGGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGT
ATTTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATG
TGACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATG
AAGGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGC
AGCACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTC
ATATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCA
GGTGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGG
CCGCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGG
GTGGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATA
ACGTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAG
ATGCAAGACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGG
ATTCCTTTGTGTTAGCCTTTCCGATCAATTAAGTTTTATACGGTGGCAGA
CTAATCATTTCTCCATGAGTTTCTGAATTT
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