CX290458

Overview
NameCX290458
Unique NameCX290458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_KORCO (30S ribosomal protein S11P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps11p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.710e-23
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 2
Query:  155 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 484
            GVAHI++SFNDT +H+TD++G ETL R +GGM V ADR E SPYAA+ AA   ++  +  GIT L +K+RA            A +A+R L+RS + + R+EDVTPIP D
Sbjct:   10 GVAHIYSSFNDTIVHITDITGAETLARYSGGMFVDADRLEGSPYAALKAAMAAAKEAQRKGITHLIVKVRAPGGIKSRIPGPGATAAIRGLSRSQLTLIRVEDVTPIPHD 119          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_PIG (40S ribosomal protein S14 (Fragment) OS=Sus scrofa GN=RPS14 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 2
Query:   83 RKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV 313
            RK +E KEE V +LGP V +GE+VFGV HIFAS NDTF+HVTDLSG E++ R+TGGMK+KADR E SPY AMLAAQ V
Sbjct:    2 RKGKEKKEEQVISLGPQVAEGENVFGVCHIFASPNDTFVHVTDLSGXESICRVTGGMKMKADRXEXSPYXAMLAAQAV 79          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_NANEQ (30S ribosomal protein S11P OS=Nanoarchaeum equitans GN=rps11p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 58/112 (51.79%), Postives = 75/112 (66.96%), Query Frame = 2
Query:  152 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRA-XXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 484
            +GVAHI++S N+T IH+TD++G ET+   +GGM V ADR E SP AA+LAA+  +   KE GIT LHIK+RA             A +A++ LAR G+KIG IEDVTP P D
Sbjct:    6 WGVAHIYSSENNTIIHITDITGAETIAVGSGGMVVNADRLEGSPTAAILAAKRAAALAKERGITGLHIKVRAPGGHNGPWIPGPGASAAIKTLAREGLKIGIIEDVTPTPHD 117          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS14_TOBAC (40S ribosomal protein S14 (Fragment) OS=Nicotiana tabacum GN=RPS14 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 42/55 (76.36%), Postives = 42/55 (76.36%), Query Frame = 2
Query:  326 KELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 490
            KELGI ALHIKLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 KELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 55          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_CAUSK (30S ribosomal protein S11 OS=Caulobacter sp. (strain K31) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  155 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L + +               +SALRAL  +GM I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQMAAEDAGKKAAEHGVKTLEVNVSG--------PGSGRESALRALQAAGMTITTIRDVTPIP 117          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_PELCD (30S ribosomal protein S11 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 39/108 (36.11%), Postives = 66/108 (61.11%), Query Frame = 2
Query:  155 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            G+AHI A+FN+T + +TD++G        G M  K  R +S+P+AA +AA+D +++  E G+ ++ ++++              +SALRAL+ +G+ I  I+DVTPIP
Sbjct:   21 GIAHIQATFNNTIVTITDIAGNVISWSTCGTMNFKGSR-KSTPFAAQIAAEDAAKKAMEHGLRSVEVRVKG--------PGSGRESALRALSSAGLNISVIKDVTPIP 119          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_CAUCR (30S ribosomal protein S11 OS=Caulobacter crescentus GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  155 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L + +               +SALRAL  +GM I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGMMGFKGSR-KSTPYAAQMAAEDAGKKAAEHGVKTLEVNVSG--------PGSGRESALRALQAAGMTITTIRDVTPIP 117          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_CAUCN (30S ribosomal protein S11 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  155 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L + +               +SALRAL  +GM I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGMMGFKGSR-KSTPYAAQMAAEDAGKKAAEHGVKTLEVNVSG--------PGSGRESALRALQAAGMTITTIRDVTPIP 117          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_AZOC5 (30S ribosomal protein S11 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  155 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA LAA+D +++  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQLAAEDAARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFLVTSIRDVTPIP 117          
BLAST of CX290458 vs. ExPASy Swiss-Prot
Match: RS11_METS4 (30S ribosomal protein S11 OS=Methylobacterium sp. (strain 4-46) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  149 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 478
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117          
The following BLAST results are available for this feature:
BLAST of CX290458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS11_KORCO2.710e-2350.0030S ribosomal protein S11P OS=Korarchaeum cryptofi... [more]
RS14_PIG3.539e-2370.5140S ribosomal protein S14 (Fragment) OS=Sus scrofa... [more]
RS11_NANEQ2.294e-2251.7930S ribosomal protein S11P OS=Nanoarchaeum equitan... [more]
RS14_TOBAC6.690e-1476.3640S ribosomal protein S14 (Fragment) OS=Nicotiana ... [more]
RS11_CAUSK9.660e-1340.7430S ribosomal protein S11 OS=Caulobacter sp. (stra... [more]
RS11_PELCD1.262e-1236.1130S ribosomal protein S11 OS=Pelobacter carbinolic... [more]
RS11_CAUCR2.152e-1240.7430S ribosomal protein S11 OS=Caulobacter crescentu... [more]
RS11_CAUCN2.152e-1240.7430S ribosomal protein S11 OS=Caulobacter crescentu... [more]
RS11_AZOC53.671e-1239.8130S ribosomal protein S11 OS=Azorhizobium caulinod... [more]
RS11_METS44.794e-1239.0930S ribosomal protein S11 OS=Methylobacterium sp. ... [more]

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Properties
Property NameValue
Genbank descriptionC02024D08SK IF1 Citrus clementina cDNA clone C02024D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290458 ID=CX290458; Name=CX290458; organism=Citrus clementina; type=EST; length=730bp
GATTCGGCCGAGGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATC
AACTCTCCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCT
AAGGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGT
ATTTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATG
TGACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATG
AAGGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGC
AGCACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTC
ATATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCA
GGTGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGG
CCGCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGG
GTGGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATA
ACGTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAG
ATGCAAGACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGG
ATTCCTTTGTGTTAGCCTTTCCGATCAATTAAGTTTTATACGGTGGCAGA
CTAATCATTTCTCCATGAGTTTCTGAATTT
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