CX290466

Overview
NameCX290466
Unique NameCX290466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.673e-27
Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 2
Query:   17 INKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM--ERNVAGTLT 520
            I K    + + LSE+ +     + N GCNGGL    +++II++G +  E DYPY   D +C T  K+ + +T   Y  VP N+E  L+ A++   + V+I+     FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+SWG+ GYI M  E N  G  T
Sbjct:  129 IEKGGDANTLDLSEEHMQCTRDNGNNGCNGGLGSNVYDYIIEHG-VAKESDYPYTGSDSTCKTNVKSFRKIT--GYTKVPRNNEAELKAALSQGLLDVSIDVSSAKFQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTSWGDKGYINMVIEGNTCGVAT 299          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.559e-27
Identity = 64/168 (38.10%), Postives = 92/168 (54.76%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            LI+LSEQ+++DCD   + GCNGGL+  AFE II  GG+  E DYPY+A + +C        V   D Y  + + +EK         P+ +AI+   +    Y+ GI      + L+H V  VGYG EN   YW  KN+WG+ WGE G+ R+++N+       CG+  E
Sbjct:  156 LINLSEQQMIDCDF-VDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNNCRMNTNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVN--YKQGIIKYCFNSGLNHAVLLVGYGVENNIPYWTFKNTWGTDWGEEGFFRVQQNI-----NACGMRNE 315          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 64/168 (38.10%), Postives = 92/168 (54.76%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            LI+LSEQ+++DCD   + GCNGGL+  AFE II  GG+  E DYPY+A + +C        V   D Y  + + +EK         P+ +AI+   +    Y+ GI      + L+H V  VGYG EN   YW  KN+WG+ WGE G+ R+++N+       CG+  E
Sbjct:  156 LINLSEQQMIDCDF-VDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNNCRMNSNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVN--YKQGIIKYCFNSGLNHAVLLVGYGVENNIPYWTFKNTWGTDWGEDGFFRVQQNI-----NACGMRNE 315          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 70/167 (41.92%), Postives = 95/167 (56.89%), Query Frame = 2
Query:   44 ISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVT-IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM--ERNVAGTLT 520
            + LSE+ +V C     N GCNGGL    + +I++NG I  E DYPY   D +C   R + K    I  Y  V  N+E  L+ A++   V V+I+   + FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+ WGE GYI M  E N  G  T
Sbjct:  142 LDLSEEHMVQCTREDGNNGCNGGLGSNVYNYIMENG-IAKESDYPYTGSDSTC---RSDVKAFAKIKSYNRVARNNEVELKAAISQGLVDVSIDASSVQFQLYKSGAYTDTQCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGEKGYINMVIEGNTCGVAT 304          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 65/168 (38.69%), Postives = 93/168 (55.36%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            LI+LSEQ+L+DCD   + GC+GGL+  A+E +++ GGI  E DYPY+A +G C        V     Y  V + +EK         P+ VAI+   +    Y+ G+        L+H V  VGY  ENG  +WI+KN+WG+ WGE GY R+++N+       CGI  E
Sbjct:  157 LINLSEQQLIDCDF-VDMGCDGGLLHTAYEAVMNMGGIQAENDYPYEANNGDCRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVN--YKRGVIRYCANHGLNHAVLLVGYAVENGVPFWILKNTWGTDWGEQGYFRVQQNI-----NACGIQNE 316          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP7_DICDI (Cysteine proteinase 7 OS=Dictyostelium discoideum GN=cprG PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 67/147 (45.58%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    5 AVQGINKIVTG--SLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFT--GRCGTSLDHGVTAVGYGTENGA 430
            A +G   +  G  +L+SLSEQ L+DC  SY N GC GGLM  AFE+II+N GIDTE  YPY A DG    +        +  Y +V    E  L   V   P SVAI+    +FQLY SGI+       T LDHGV AVG+GT +G+
Sbjct:  142 ATEGAQYLANGKKNLVSLSEQNLIDCSGSYGNNGCEGGLMTLAFEYIINNKGIDTESSYPYTAEDGKKCKFNPKNVAAQLSSYVNVTSGSESDLAAKVTQGPTSVAIDASNQSFQLYVSGIYNEPACSSTQLDHGVLAVGFGTGSGS 288          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 66/168 (39.29%), Postives = 90/168 (53.57%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            LI+LSEQ+++DCD S + GC GGL+  AFE II  GG+  E DYPY++ +  C        V        + + +EK         P+ VAI+   +    YE GI        L+H V  VGYG EN   YWI+KNSWG+ WGE G+ ++++NV       CGI  E
Sbjct:  156 LINLSEQQMIDCD-SVDVGCEGGLLHTAFEAIISMGGVQIENDYPYESSNNYCRMDPTKFVVGVKQCNRYITIYEEKLKDVLRLAGPIPVAIDASDILN--YEQGIIKYCANNGLNHAVLLVGYGVENNVPYWILKNSWGTDWGEQGFFKIQQNV-----NACGIKNE 315          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 64/168 (38.10%), Postives = 92/168 (54.76%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            LI+LSEQ+++DCD   + GCNGGL+  AFE II  GG+  E DYPY+A + +C        V   D Y  + + +EK         P+ +AI+   +    Y+ GI      + L+H V  VGYG EN   YW  KN+WG+ WGE G+ R+++N+       CG+  E
Sbjct:  156 LINLSEQQMIDCDF-VDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNNCRMNSNKFLVQVKDCYRYIIVYEEKLKDLLPLVGPIPMAIDAADIVN--YKQGIIKYCFDSGLNHAVLLVGYGVENNIPYWTFKNTWGTDWGEDGFFRVQQNI-----NACGMRNE 315          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 2
Query:   50 LSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            LSEQ+LVDC   Y N+GCNGG MD AFE++ DNG +   +DYPY A DG+C T  K      +  ++D+   DE  L + +  + V+VA++     +Q Y SG+ + +C  +L+HGV  VG   +     W ++NSWGSSWGEAG+IR+    AG  T  CGI    S+
Sbjct:  158 LSEQDLVDCSGPYDNDGCNGGWMDSAFEYVADNG-LAEAKDYPYTAKDGTCKTSVKRP-YTHVQGFKDIDSCDE--LAQTIQERTVAVAVDAN--PWQFYRSGVLS-KCTKNLNHGVVLVGVQADGA---WKIRNSWGSSWGEAGHIRL----AGGDT--CGICAAPSF 310          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 67/169 (39.64%), Postives = 94/169 (55.62%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAV-ANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            LI LSEQ+L+DCD   + GCNGGLM  AF+ ++  GG++TE DYPY+  +  C T       V ++      + DE  L++ V    PV++A++   M    Y  GI        L+H V  +G+G EN   YWI+KNSWG  WGE G++R+ RNV       CG+  E
Sbjct:  200 LIDLSEQQLLDCD-EVDLGCNGGLMHLAFQELLLMGGVETEADYPYQGSEQMC-TLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVDA--MDIINYRRGILNQCHIYDLNHAVLLIGWGIENNVPYWIIKNSWGEDWGENGFLRVRRNV-----NACGLLNE 359          
The following BLAST results are available for this feature:
BLAST of CX290466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
ACP2_ENTHI2.673e-2739.66Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
CATV_NPVRO4.559e-2738.10Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
CATV_NPVAC5.954e-2738.10Viral cathepsin OS=Autographa californica nuclear ... [more]
CPP1_ENTHI7.777e-2741.92Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]
CATV_NPVCD7.777e-2738.69Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CYSP7_DICDI1.016e-2645.58Cysteine proteinase 7 OS=Dictyostelium discoideum ... [more]
CATV_NPVEP1.016e-2639.29Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
CATV_NPVBM1.016e-2638.10Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATL1_PARTE1.016e-2642.60Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATV_NPVHZ1.327e-2639.64Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]

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Properties
Property NameValue
Genbank descriptionC02024E04SK IF1 Citrus clementina cDNA clone C02024E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290466 ID=CX290466; Name=CX290466; organism=Citrus clementina; type=EST; length=675bp
GAGGGCTGTACAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCAC
TATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGT
AATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGG
TATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTGTG
ACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGAT
GTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACC
CGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAAT
CGGGTATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACT
GCTGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAA
TTCATGGGGCAGTAGCTGGGGAGAGGCTGGCTATATTAGGATGGAGCGTA
ACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCA
TATCCCATAAAGAAAGGCCAAAATCCTCCCAACCCTGGACCGTCCCCTCC
ATCTCCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTG
AGAGCAACACTTGCTGCTGTGTCTT
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