CX290466

Overview
NameCX290466
Unique NameCX290466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 72/176 (40.91%), Postives = 97/176 (55.11%), Query Frame = 2
Query:   35 GSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGI---FTGRCGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 550
            G+L+SLSEQEL+DCD   ++ C GGL   A+  I + GG++TE+DY Y+    +C+   + AKV  I+D  ++  N+ K         P+SVAI   GM F  Y  GI   F   C    +DH V  VGYG  +   YW +KNSWGS WGE GY  + R      +G CG+   AS
Sbjct:  291 GTLLSLSEQELLDCD-KVDKACLGGLPSNAYAAIKNLGGLETEDDYGYQGHVQTCNFSAQMAKVY-INDSVELSRNENKIAAWLAQKGPISVAINAFGMQF--YRHGIAHPFRPLCSPWFIDHAVLLVGYGNRSNIPYWAIKNSWGSDWGEEGYYYLYRG-----SGACGVNTMAS 457          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 71/176 (40.34%), Postives = 97/176 (55.11%), Query Frame = 2
Query:   35 GSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGI---FTGRCGTSL-DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 550
            G+L+SLSEQEL+DCD   ++ C GGL   A+  I + GG++TE+DY Y+    SC+   + AKV  I+D  ++  N++K         P+SVAI   GM F  Y  GI       C   L DH V  VGYG  +   +W +KNSWG+ WGE GY  + R      +G CG+   AS
Sbjct:  313 GTLLSLSEQELLDCD-KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCNFSAEKAKVY-INDSVELSQNEQKLAAWLAKRGPISVAINAFGMQF--YRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVPFWAIKNSWGTDWGEKGYYYLHRG-----SGACGVNTMAS 479          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 67/155 (43.23%), Postives = 91/155 (58.71%), Query Frame = 2
Query:   38 SLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIID--NGGIDTEEDYPYKAIDGSCDTYRKNAKV-VTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 493
            SL+SLSEQ LV CD + +EGCNGGLMD A  +I+   NG + TE  YPY +  G+        +V   I  +  +P ++E+  +      PV+VA++     +QLY  G+ +     SL+HGV  VG+       YWIVKNSWGSSWGE GYIR+
Sbjct:  172 SLVSLSEQMLVSCD-NIDEGCNGGLMDQAMNWIMQSHNGSVFTEASYPYTSGGGTRPPCHDEGEVGAKITGFLSLPHDEERIAEWVEKRGPVAVAVDA--TTWQLYFGGVVSLCLAWSLNHGVLIVGFNKNAKPPYWIVKNSWGSSWGEKGYIRL 323          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 67/155 (43.23%), Postives = 91/155 (58.71%), Query Frame = 2
Query:   38 SLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIID--NGGIDTEEDYPYKAIDGSCDTYRKNAKV-VTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 493
            SL+SLSEQ LV CD + +EGCNGGLMD A  +I+   NG + TE  YPY +  G+        +V   I  +  +P ++E+  +      PV+VA++     +QLY  G+ +     SL+HGV  VG+       YWIVKNSWGSSWGE GYIR+
Sbjct:  172 SLVSLSEQMLVSCD-NIDEGCNGGLMDQAMNWIMQSHNGSVFTEASYPYTSGGGTRPPCHDEGEVGAKITGFLSLPHDEERIAEWVEKRGPVAVAVDA--TTWQLYFGGVVSLCLAWSLNHGVLIVGFNKNAKPPYWIVKNSWGSSWGEKGYIRL 323          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.860e-26
Identity = 64/168 (38.10%), Postives = 88/168 (52.38%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            LI+LSEQ+ +DCD   N GC+GGL+  AFE  ++ GG+  E DYPY+  +G C        V        + + +EK      A  P+ VAI+   +    Y  GI        L+H V  VGY  EN   YWI+KN+WG+ WGE GY R+++N+       CGI  E
Sbjct:  157 LINLSEQQFIDCDR-VNAGCDGGLLHTAFESAMEMGGVQMESDYPYETANGQCRINPNRFVVGVRSCRRYIVMFEEKLKDLLRAVGPIPVAIDASDIVN--YRRGIMRQCANHGLNHAVLLVGYAVENNIPYWILKNTWGTDWGEDGYFRVQQNI-----NACGIRNE 316          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDN--GGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPL--NDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTL 517
            L+SLSEQ+LV CD   N+GC+GGLM  AF++++ N  G + TE+ YPY + +G       ++++V     +   L  + EKA+   +A N P+++A++    +F  Y+SG+ T   G  L+HGV  VGY       YW++KNSWG  WGE GY+R+   V   L
Sbjct:  170 LVSLSEQQLVSCD-DMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDAS--SFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACL 330          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.583e-26
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDN--GGIDTEEDYPYKAIDG---SCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTL 517
            L+SLSEQ+LV CD   N+GC+GGLM  AF++++ N  G + TE+ YPY + +G    C    +   V    D   +  + EKA+   +A N P+++A++    +F  Y+SG+ T   G  L+HGV  VGY       YW++KNSWG  WGE GY+R+   V   L
Sbjct:  170 LVSLSEQQLVSCD-DMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYVSGNGYVPECSNSSEELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDAS--SFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACL 331          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATL1_FELCA (Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.598e-26
Identity = 61/140 (43.57%), Postives = 84/140 (60.00%), Query Frame = 2
Query:  104 GGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYG-----TENGADYWIVKNSWGSSWGEAGYIRMERN 502
            GGL+D AF+++ DNGG+D+EE YPY A   SC  YR    V  + DY D+P  + + +    A  P+S AI+     F+ Y+ GI+     +S  +DHGV  VGYG     TEN   YWI+KNSWG+ WG  GYI+M ++
Sbjct:    1 GGLIDDAFQYVKDNGGLDSEESYPYHAQGDSC-KYRPENSVANVTDYWDIPSKENELMITLAAVGPISAAIDASLDTFRFYKEGIYYDPSCSSEDVDHGVLVVGYGADGTETEN-KKYWIIKNSWGTDWGMDGYIKMAKD 138          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 65/174 (37.36%), Postives = 97/174 (55.75%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFII--DNGGIDTEEDYPYKAIDGSCDTYRKNAKVV--TIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 550
            L +LSEQ LV CD + + GC+GGLM+ AFE+I+  +NG + TE+ YPY + +G       +   V  TI  + ++P ++ +       N PV+VA++    ++  Y  G+ T      LDHGV  VGY       YWI+KNSW + WGE GYIR+ +      + +C +  EAS
Sbjct:  167 LTNLSEQMLVSCDKT-DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG-----SNQCLVKEEAS 332          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.502e-25
Identity = 69/182 (37.91%), Postives = 102/182 (56.04%), Query Frame = 2
Query:    8 VQGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKA-VANQPVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            ++ +  I     ++LSEQ LV+CD + N GC GGLM +A E I+  GG+ + E+ PY   DG C   +K+   ++I       L +E  L++  V N P+SVAI+   +    Y++GI    C  +  L+H V  VGYG +N   YWI+KNSWG+ WGE GY R++R+        CG+  E
Sbjct:  157 IESLYNIKYDKALNLSEQHLVNCD-NINNGCAGGLMHWALESILQEGGVVSAENEPYYGFDGVC---KKSPFELSISGSRRYVLQNENKLRELLVVNGPISVAIDVSDLIN--YKAGI-ADICENNEGLNHAVLLVGYGVKNDVPYWILKNSWGAEWGEEGYFRVQRD-----KNSCGMMNE 326          
The following BLAST results are available for this feature:
BLAST of CX290466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CATF_MOUSE2.955e-2640.91Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CATF_HUMAN2.955e-2640.34Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
LMCPA_LEIME3.860e-2643.23Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP1_LEIPI3.860e-2643.23Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CATV_NPVOP3.860e-2638.10Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
LMCPB_LEIME5.041e-2639.02Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
CYSP2_LEIPI6.583e-2639.39Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
CATL1_FELCA8.598e-2643.57Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE... [more]
CYSP_TRYCR1.123e-2537.36Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
CATV_GVCP2.502e-2537.91Viral cathepsin OS=Cydia pomonella granulosis viru... [more]

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Properties
Property NameValue
Genbank descriptionC02024E04SK IF1 Citrus clementina cDNA clone C02024E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290466 ID=CX290466; Name=CX290466; organism=Citrus clementina; type=EST; length=675bp
GAGGGCTGTACAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCAC
TATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGT
AATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGG
TATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTGTG
ACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGAT
GTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACC
CGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAAT
CGGGTATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACT
GCTGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAA
TTCATGGGGCAGTAGCTGGGGAGAGGCTGGCTATATTAGGATGGAGCGTA
ACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCA
TATCCCATAAAGAAAGGCCAAAATCCTCCCAACCCTGGACCGTCCCCTCC
ATCTCCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTG
AGAGCAACACTTGCTGCTGTGTCTT
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