CX290466

Overview
NameCX290466
Unique NameCX290466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.502e-25
Identity = 71/191 (37.17%), Postives = 105/191 (54.97%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIF-TGRCGT-SLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            A++G     TG+L  LS Q L+DC  S  N GC  G    AF +++ N G++ E  YPY+  DG C  + +NA    I  + ++P N E  L  AVA+  PVS AI+    +F+ Y  G++    C +  ++H V  VGYG E    +G +YW++KNSWG  WG  G+++    +A      CGIA +AS+
Sbjct:  146 AIEGQMFSKTGNLTPLSVQNLLDCSKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPYEGKDGPCRYHSENAS-ANITGFVNLPPN-ELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYVVNHAVLVVGYGFEGNETDGNNYWLIKNSWGEEWGINGFMK----IAKDRNNHCGIASQASF 330          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.267e-25
Identity = 64/181 (35.36%), Postives = 98/181 (54.14%), Query Frame = 2
Query:   32 TGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIF-TGRCGT-SLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            TG L  LS Q LVDC     N GC GG    AF++++ NGG+++E  YPY+  DG C    KN+K   I  +  +P +++  +       P++  I+    +F+ Y+ GI+    C + ++ HGV  VGYG +    +G  YW++KNSWG  WG  GY+++ ++        CGIA  A Y
Sbjct:  156 TGKLTPLSVQNLVDCSKPQGNNGCLGGDTYNAFQYVLHNGGLESEATYPYEGKDGPCRYNPKNSK-AEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKGIETDGNHYWLIKNSWGKRWGIRGYMKLAKD----KNNHCGIASYAHY 331          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.267e-25
Identity = 69/190 (36.32%), Postives = 99/190 (52.11%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYG----TENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            A++G     TG LI LS Q LVDC     N GC  G    A  ++++NGG+++E  YPY+  DGSC  Y        I  +E VP N++  +    +  P+SVAI+    +F  Y+ GI +   C +  + H +  VGYG      +G  YW+VKNS G+ WG  GY+++ R+        CGIA  A Y
Sbjct:  146 AIEGQMFRKTGQLIPLSVQNLVDCSRPQGNWGCYLGNTYLALHYVMENGGLESEATYPYEEKDGSC-RYSPENSTANITGFEFVPKNEDALMNAVASIGPISVAIDARHASFLFYKRGIYYEPNCSSCVVTHSMLLVGYGFTGRESDGRKYWLVKNSMGTQWGNKGYMKISRDKG----NHCGIATYALY 330          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP_THEAN (Cysteine proteinase OS=Theileria annulata GN=TACP PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.279e-25
Identity = 70/179 (39.11%), Postives = 94/179 (52.51%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGT--ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 535
            +V+ + ++       LSEQELV+CD S + GC GGL   A E+I  + G+  E + PY  I   C    KN   V ID    +  ND       ++   V +A+       +LY  GIFTG+CG  L+H V  VG G   E G  YWI+KNSWG  WGE G++R++R   G    KCGI
Sbjct:  260 SVESLYRLYKNKSYFLSEQELVNCDKS-SMGCAGGLPITALEYI-HSKGVSFESEVPYTGIVSPCKPSIKNK--VFIDSISILKGNDVVNKSLVISPTVVGIAVT---KELKLYSGGIFTGKCGGELNHAVLLVGEGVDHETGMRYWIIKNSWGEDWGENGFLRLQRTKKG--LDKCGI 429          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.506e-25
Identity = 64/168 (38.10%), Postives = 92/168 (54.76%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            LI L+EQ+LVDCD   + GC+GGL+  A+E I+  GG++ E DYPYKA+   C        V   + Y  V L++E+         P+++A++   +    Y  G+ +      L+H V  VGYG EN   YW +KNSWGS +GE GY+R+ R V       CG+  E
Sbjct:  170 LIDLAEQQLVDCDF-VDMGCDGGLIHTAYEQIMHIGGVEQEYDYPYKAVRLPCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVDAVDLTD--YYGGVISFCENNGLNHAVLLVGYGIENNVPYWTIKNSWGSDYGENGYVRIRRGV-----NSCGMINE 329          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.118e-24
Identity = 66/168 (39.29%), Postives = 90/168 (53.57%), Query Frame = 2
Query:   41 LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            LI LSEQ+LVDCD   + GC+GGL+  A+E I+  GG++ E DY YKA    C            + Y  V LN+E+         P+++A++   +    Y  GI +      L+H V  VGYG EN   YWI+KNSWGS +GE GY+R+ R V       CG+  E
Sbjct:  170 LIDLSEQQLVDCDF-VDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYKAERQPCALKPHKFATGVRNCYRYVILNEERLEDLLRYVGPIAIAVDAVDLTD--YYGGIVSFCENNGLNHAVLLVGYGVENNVPYWIIKNSWGSDYGEDGYVRVRRGV-----NSCGMINE 329          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.612e-24
Identity = 61/189 (32.28%), Postives = 98/189 (51.85%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            A++G     TG LI LS Q L+DC     N GC  G    AF++++ NGG++ E  YPY+  +G C    KN+    I  +  +P +++  +       P++  +     +F+ Y+ G++   +C + ++H V  VGYG E    +G +YW++KNSWG  WG  GY++    +A      C IA  A Y
Sbjct:  157 AIEGQMFKKTGKLIPLSVQNLIDCSKPQGNRGCLWGNTYNAFQYVLHNGGLEAEATYPYERKEGVCRYNPKNSS-AKITGFVVLPESEDVLMDAVATKGPIATGVHVISSSFRFYQKGVYHEPKCSSYVNHAVLVVGYGFEGNETDGNNYWLIKNSWGKRWGLRGYMK----IAKDRNNHCAIASLAQY 340          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.612e-24
Identity = 70/175 (40.00%), Postives = 94/175 (53.71%), Query Frame = 2
Query:   32 TGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGI------FTGRCGTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 535
            TG L+SLSEQ+LVDCD   ++GCNGGL   A+E II  GG+  E++YPY A +  C   + +   V I+   ++  ++ +       N  +SV +    +  Q Y+ GI      F  +    LDH V  VGYG +E    +WIVKNSWG  WGE GY RM R       G CGI
Sbjct:  146 TGKLLSLSEQQLVDCD-GLDDGCNGGLPSNAYESIIKMGGLMLEDNYPYDAKNEKCHL-KTDGVAVYINSSVNLTQDETELAAWLYHNSTISVGMNA--LLLQFYQHGISHPWWIFCSKY--LLDHAVLLVGYGVSEKNEPFWIVKNSWGVEWGENGYFRMYRG-----DGSCGI 309          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP6_DICDI (Cysteine proteinase 6 OS=Dictyostelium discoideum GN=cprF PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 68/167 (40.72%), Postives = 86/167 (51.50%), Query Frame = 2
Query:    5 AVQGINKIVTGS--LISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFT--GRCGTSLDHGVTAVGYGTEN--------GADYWIVKNSWGSS 466
            A +G   I  G   L S+SEQ+L+DC  SY N GC GGLM  AFE+II+NGGIDTE  YP+ A    C  Y  +     +  Y +V    E  L   V   P SVAI+    +FQ Y SGI+       T LDHGV AVG+G+ +        G+      N+W  S
Sbjct:  144 ATEGAQYIANGDSDLTSVSEQQLIDCSGSYGNNGCEGGLMTLAFEYIINNGGIDTESSYPFTANTEKC-KYNPSNIGAELSSYVNVTSGSESDLAAKVTQGPTSVAIDASQPSFQFYSSGIYNEPACSSTQLDHGVLAVGFGSGSSGSQSQSAGSQSQSSNNNWSES 309          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP_THEPA (Cysteine proteinase OS=Theileria parva GN=TP03_0285 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 62/164 (37.80%), Postives = 96/164 (58.54%), Query Frame = 2
Query:   50 LSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGAD--YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 535
            LS QEL+DCD S++ GC GGL++ A+E++    G+ + +D P+      C   +  AK V++  Y       ++ + +++ + P SV +       + Y+SG+FTG CG SL+H V  VG G +      YW+V+NSWG+ WGE GY+R+ER   G  T KCG+
Sbjct:  276 LSVQELLDCD-SFSNGCQGGLLESAYEYV-RKYGLVSAKDLPFVDKARRCSVPK--AKKVSVPSYH--VFKGKEVMTRSLTSSPCSVYLSVSPELAK-YKSGVFTGECGKSLNHAVVLVGEGYDEVTKKRYWVVQNSWGTDWGENGYMRLERTNMG--TDKCGV 430          
The following BLAST results are available for this feature:
BLAST of CX290466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CATJ_RAT2.502e-2537.17Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATR_MOUSE3.267e-2535.36Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATM_MOUSE4.267e-2536.32Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
CYSP_THEAN7.279e-2539.11Cysteine proteinase OS=Theileria annulata GN=TACP ... [more]
CATV_NPVMC9.506e-2538.10Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATV_NPVSE2.118e-2439.29Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATQ_RAT3.612e-2432.28Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATL_SCHMA3.612e-2440.00Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CYSP6_DICDI1.051e-2340.72Cysteine proteinase 6 OS=Dictyostelium discoideum ... [more]
CYSP_THEPA1.793e-2337.80Cysteine proteinase OS=Theileria parva GN=TP03_028... [more]

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Properties
Property NameValue
Genbank descriptionC02024E04SK IF1 Citrus clementina cDNA clone C02024E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290466 ID=CX290466; Name=CX290466; organism=Citrus clementina; type=EST; length=675bp
GAGGGCTGTACAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCAC
TATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGT
AATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGG
TATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTGTG
ACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGAT
GTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACC
CGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAAT
CGGGTATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACT
GCTGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAA
TTCATGGGGCAGTAGCTGGGGAGAGGCTGGCTATATTAGGATGGAGCGTA
ACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCA
TATCCCATAAAGAAAGGCCAAAATCCTCCCAACCCTGGACCGTCCCCTCC
ATCTCCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTG
AGAGCAACACTTGCTGCTGTGTCTT
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