CX290466

Overview
NameCX290466
Unique NameCX290466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.342e-23
Identity = 62/168 (36.90%), Postives = 86/168 (51.19%), Query Frame = 2
Query:   44 ISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDD-YEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            I LSEQ+++DCD   + GC+GGL+  AFE +I  G +  E +YPY  ++  C+       VV +   Y  V   +EK      A  P+ +AI+  G+    Y  GI        L+H V  VGYG EN   +W  KN+WG  WGE GY R+ +NV       CG+  E
Sbjct:  161 IDLSEQQMIDCDY-VDMGCDGGLLHTAFEQMIQMGELVQEHEYPYAGVNKPCELRGDETGVVKVKGCYRYVVFREEKLKDLLRAVGPIPMAIDASGIVN--YHHGIIHYCENYGLNHAVLLVGYGVENNVPFWTFKNTWGKDWGEEGYFRVRQNV-----DACGMTNE 320          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.518e-22
Identity = 76/202 (37.62%), Postives = 101/202 (50.00%), Query Frame = 2
Query:   44 ISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAI-DGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYG-----------------------TEN--GAD------YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            IS SEQ++VDC T  N GC+GG   YAF ++I+NG +   ++YPYK   D  C  YR +  +  +    DV  N+       V   PV++A+ G    F LY  G+F G C   L+H V  VGYG                        EN  G D      YWIV+NSWG +WGE GYIR++RN AG   G CG+  +  +
Sbjct:  309 ISFSEQQMVDCSTE-NYGCDGGNPFYAFLYMINNG-VCLGDEYPYKGHEDFFCLNYRCSL-LGRVHFIGDVKPNELIMALNYVG--PVTIAV-GASEDFVLYSGGVFDGECNPELNHSVLLVGYGQVKKSLAFEDSHSNVDSNLIKKYKENIKGDDDDDIIYYWIVRNSWGPNWGEGGYIRIKRNKAGD-DGFCGVGSDVFF 503          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVS (Cysteine proteinase OS=Plasmodium vivax (strain Salvador I) PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.328e-21
Identity = 76/205 (37.07%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   38 SLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGS-CDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYG--------------------TENGA------------DYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            ++++LSEQE+VDC +  N GC+GG   Y+F + I+NG I   +DY YKA+D   C  YR   KV T+     V  N+       V   PVSV + G    F  Y  GIF G C   L+H V  VGYG                    T+ GA             YWI+KNSW   WGE G++R+ RN  G     CGI +E  Y
Sbjct:  383 TILTLSEQEVVDC-SKLNFGCDGGHPFYSFIYAIENG-ICMGDDYKYKAMDNLFCLNYRCKNKV-TLSSVGGVKENELIRALNEVG--PVSVNV-GVTDDFSFYGGGIFNGTCTEELNHSVLLVGYGQVQSSKIFQEKNAYDDASGVTKKGALSYPSKADDGIQYYWIIKNSWSKFWGENGFMRISRNKEGD-NVFCGIGVEVFY 580          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATL3_PARTE (Putative cathepsin L 3 OS=Paramecium tetraurelia GN=GSPATT00022199001 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19
Identity = 61/172 (35.47%), Postives = 92/172 (53.49%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM-ERNVAGTL 517
            A++G  KI      + S Q++VDCD + N GC+GG   YA E+++   G+ +  +YPY A + +C   R       I+ Y  V    +  LQ  + N P+SV +E     +Q Y SG+F+       +H   AVG+ + N    WIV+NSWG+ WGE+G IR+  +N  G L
Sbjct:  146 AIRGFQKI------NASTQQIVDCDYN-NTGCSGGYNAYAMEYVL-RVGLVSSTNYPYVAKNQTCKQSRNGTYF--INGYSFVG-GSQSNLQYYLNNYPISVGVEASN--WQFYRSGLFSNCSSNGTNHYALAVGFDSANN---WIVQNSWGTQWGESGNIRLYPQNTCGIL 301          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 64/198 (32.32%), Postives = 88/198 (44.44%), Query Frame = 2
Query:   38 SLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGS-CDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGT-------------------------ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            +++S SEQE+VDC    N GC+GG   Y+F +++ N  +   ++Y YKA D   C  YR   KV ++     V  N        V    V+V +      F  Y  G++ G C   L+H V  VGYG                          +N   YWI+KNSW   WGE G++R+ RN  G     CGI  E  Y
Sbjct:  376 NILSFSEQEVVDCSKD-NFGCDGGHPFYSFLYVLQNE-LCLGDEYKYKAKDDMFCLNYRCKRKV-SLSSIGAVKENQLILALNEVGPLSVNVGVNND---FVAYSEGVYNGTCSEELNHSVLLVGYGQVEKTKLNYNNKIQTYNTKENSNQPDDNIIYYWIIKNSWSKKWGENGFMRLSRNKNGD-NVFCGIGEEVFY 566          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 65/179 (36.31%), Postives = 90/179 (50.28%), Query Frame = 2
Query:    2 RAVQGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKA----IDGSCDTY----RKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCG-TSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNV 505
            R V G++K      +  S Q +V CD   +  CNGG +   ++F+   G   T+E  PYK+    + G+C T          + T   Y+D  L D  A+ KA++   P+ VA       F  YESG++    G     H V  VGYGT++ G DYWI+KNSWG  WGE GY RM R +
Sbjct:  114 RCVAGLDK----KPVKYSPQYVVSCDHG-DMACNGGWLPNVWKFLTKTG-TTTDECVPYKSGSTTLRGTCPTKCADGSSKVHLATATSYKDYGL-DIPAMMKALSTSGPLQVAFLVHS-DFMYYESGVYQHTYGYMEGGHAVEMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRMIRGI 284          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 53/154 (34.42%), Postives = 83/154 (53.90%), Query Frame = 2
Query:   44 ISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLD-------HGVTAVGYGTENGADYWIVKNSWGSSWGEAGY 484
            + LSEQELVDC + +  GC+G  +    E+I  NG ++ E  YPY A +  C   R N++   I +Y  +   D K +++A+     ++A+  G    + ++   + GR     D       H V  VGYG+  G DYWIV+NSW ++WG++GY
Sbjct:  154 LDLSEQELVDCASQH--GCHGDTIPRGIEYIQQNGVVE-ERSYPYVAREQRCR--RPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQH--YDGRTIIQHDNGYQPNYHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGY 300          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 58/201 (28.86%), Postives = 95/201 (47.26%), Query Frame = 2
Query:    8 VQGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYR----KNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGT----SLDHGVTAVGYGTE-----------------NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 535
            +Q + +I     + +S QEL+DC+   N GCNGG +  A+  +++N G+ +E+DYP++   G    +R    K  KV  I D+  +  N++        + P++V I       Q Y+ G+      +     +DH V  VG+G +                 + + YWI+KNSWG+ WGE GY R+ R         CG+
Sbjct:  160 IQALWRIKHQQFVDVSVQELLDCERCGN-GCNGGFVWDAYLTVLNNSGLASEKDYPFQ---GDRKPHRCLAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTINM--KLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRG-----NNTCGV 349          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.275e-17
Identity = 60/204 (29.41%), Postives = 95/204 (46.57%), Query Frame = 2
Query:    8 VQGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYR----KNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTS----LDHGVTAVGYGTENGAD--------------------YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 535
            ++ + +I     + +S QEL+DC     +GC+GG +  AF  +++N G+ +E+DYP++   G    +R    K  KV  I D+  +  N+ +  Q      P++V I    +  QLY  G+      T     +DH V  VG+G+    +                    YWI+KNSWG+ WGE GY R+ R      +  CGI
Sbjct:  162 IETLWRISFWDFVDVSVQELLDCGRC-GDGCHGGFVWDAFITVLNNSGLASEKDYPFQ---GKVRAHRCHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPITVTINMKPL--QLYRKGVIKATPTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRG-----SNTCGI 354          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 62/190 (32.63%), Postives = 91/190 (47.89%), Query Frame = 2
Query:   44 ISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYR----KNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGR---CGTSL-DHGVTAVGYG-TENGAD-----------------YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 535
            + LS QEL+DC     +GC GG +  AF  +++N G+ +E+DYP++   G    +R    K  KV  I D+  +P N++K         P++V I       +LY+ G+       C   L DH V  VG+G +E+ AD                 +WI+KNSWG+ WG  GY R+ R         CGI
Sbjct:  174 VELSVQELLDCGRC-GDGCRGGFVWDAFITVLNNSGLASEKDYPFQ---GQVKPHRCLAKKRTKVAWIQDFIMLPDNEQKIAWYLATQGPITVTINM--KLLKLYKKGVIEATPTSCDPFLVDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRG-----NNTCGI 352          
The following BLAST results are available for this feature:
BLAST of CX290466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CATV_NPVBS2.342e-2336.90Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CYSP_PLAVN1.518e-2237.62Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
CYSP_PLAVS8.328e-2137.07Cysteine proteinase OS=Plasmodium vivax (strain Sa... [more]
CATL3_PARTE2.679e-1935.47Putative cathepsin L 3 OS=Paramecium tetraurelia G... [more]
CYSP_PLAFA6.599e-1832.32Trophozoite cysteine proteinase OS=Plasmodium falc... [more]
CATB2_GIALA8.618e-1836.31Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]
PEPT1_DERFA2.508e-1734.42Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
CATW_MOUSE2.508e-1728.86Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATW_HUMAN3.275e-1729.41Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATW_FELCA4.277e-1732.63Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02024E04SK IF1 Citrus clementina cDNA clone C02024E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290466 ID=CX290466; Name=CX290466; organism=Citrus clementina; type=EST; length=675bp
GAGGGCTGTACAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCAC
TATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGT
AATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGG
TATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTGTG
ACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGAT
GTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACC
CGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAAT
CGGGTATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACT
GCTGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAA
TTCATGGGGCAGTAGCTGGGGAGAGGCTGGCTATATTAGGATGGAGCGTA
ACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCA
TATCCCATAAAGAAAGGCCAAAATCCTCCCAACCCTGGACCGTCCCCTCC
ATCTCCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTG
AGAGCAACACTTGCTGCTGTGTCTT
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