CX290466

Overview
NameCX290466
Unique NameCX290466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 80/189 (42.33%), Postives = 109/189 (57.67%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDTSYNE-GCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            A++    I TG ++SL+EQ+LVDC  ++N  GC GGL   AFE+I  N GI  E+ YPYK  D  C  ++ +  +  + D  ++ +NDE+A+ +AVA   PVS A E     F +Y  GI++     +    ++H V AVGYG ENG  YWIVKNSWG  WG  GY  +ER         CG+A  ASY
Sbjct:  149 ALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCK-FQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERG-----KNMCGLAACASY 330          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.113e-32
Identity = 80/189 (42.33%), Postives = 109/189 (57.67%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDTSYNE-GCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            A++    I TG L  L+EQ+LVDC  ++N  GC GGL   AFE+I  N GI  E+ YPY+  DG C  Y+ +  +  + D  ++ LNDE+A+ +AVA + PVS A E     F +Y  GI++     +    ++H V AVGYG E G  YWIVKNSWG +WG  GY  +ER         CG+A  AS+
Sbjct:  149 ALESAVAIATGKLPFLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGDCK-YQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTA-DFMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEEKGIPYWIVKNSWGPNWGMKGYFLIERG-----KNMCGLAACASF 330          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.760e-32
Identity = 79/173 (45.66%), Postives = 104/173 (60.12%), Query Frame = 2
Query:   44 ISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAV-ANQPVSVAIEGGGMAFQLYESGIFTGRCGTSL--DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 550
            IS SEQ+LVDC   + N GC+GGLM+ A++++    G++TE  YPY A++G C  Y K   V  +  Y  V    E  L+  V A +P +VA++     F +Y SGI+  +  + L  +H V AVGYGT+ G DYWIVKNSWG+ WGE GYIRM RN        CGIA  AS
Sbjct:  153 ISFSEQQLVDCSGPWGNNGCSGGLMENAYQYL-KQFGLETESSYPYTAVEGQC-RYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVES-DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRG----NMCGIASLAS 318          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CFAD_DICDI (Counting factor associated protein D OS=Dictyostelium discoideum GN=cfaD PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.707e-32
Identity = 73/189 (38.62%), Postives = 110/189 (58.20%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDT-SYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS----LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            +++G N +  G L+SLSEQ+LVDC   + ++GC GG    AF+++++ G + TE +YPY   +G C         V+I  Y +V    E ALQ A+A   PV++AI+     F+ Y SG++      +    LDH V A+GYGT  G DY++VKNSW ++WG  GY+ M RN        CG++ +A+Y
Sbjct:  341 SLEGTNCVTNGELVSLSEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESNYPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYYMSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKNSWSTNWGMDGYVYMARND----NNLCGVSSQATY 525          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 136.732 bits (343), Expect = 1.049e-31
Identity = 78/189 (41.27%), Postives = 109/189 (57.67%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDTSYNE-GCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            A++    I TG ++SL+EQ+LVDC   +N  GC GGL   AFE+I+ N GI  E+ YPY+  DG C  ++    +  + D  ++ + DE+A+ +AVA   PVS A E     F +Y +GI++     +    ++H V AVGYG +NG  YWIVKNSWG  WG  GY  +ER         CG+A  ASY
Sbjct:  149 ALESAIAIATGKMLSLAEQQLVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYCK-FQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVT-QDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGIPYWIVKNSWGPQWGMNGYFLIERG-----KNMCGLAACASY 330          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.370e-31
Identity = 76/187 (40.64%), Postives = 106/187 (56.68%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCD--------TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGR-CGTSLDHGVTAVGYGTENGA-------DYWIVKNSWGSSWGEAGYIRM--ERNVAG 511
            A++G N + TG L+SLSEQ+LVDCD         S + GCNGGLM+ AFE+ +  GG+  EEDYPY   DG      K+  V ++ ++  + +++E+     V N P++VAI  G M  Q Y  G+     C   L+HGV  VGYG    A        YWI+KNSWG +WGE G+ ++   RN+ G
Sbjct:  167 ALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLMNSAFEYTLKTGGLMKEEDYPYTGKDGKTCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINAGYM--QTYIGGVSCPYICTRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICG 351          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.370e-31
Identity = 78/189 (41.27%), Postives = 111/189 (58.73%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDTSYNE-GCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            A++    I +G +++L+EQ+LVDC  ++N  GC GGL   AFE+I+ N GI  E+ YPY   +G C  +     V  + +  ++ LNDE A+ +AVA   PVS A E     F +Y+SG+++     +    ++H V AVGYG +NG  YWIVKNSWGS+WG  GY  +ER         CG+A  ASY
Sbjct:  147 ALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGKNGQCK-FNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTE-DFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSNWGNNGYFLIERG-----KNMCGLAACASY 328          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.789e-31
Identity = 79/188 (42.02%), Postives = 112/188 (59.57%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDT--------SYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGR-CGTS-LDHGVTAVGYGTENGA-------DYWIVKNSWGSSWGEAGYIRM--ERNVAG 511
            A++G + + TG L+SLSEQ+LVDCD         S + GCNGGLM+ AFE+++++GG+  E+DY Y   DGSC  + K+  V ++ ++  V L++++     V N P++VAI    M  Q Y SG+     C  S LDHGV  VG+G    A        YWI+KNSWG +WGE GY ++   RNV G
Sbjct:  164 ALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGLMNNAFEYLLESGGVVQEKDYAYTGRDGSC-KFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWM--QTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCG 348          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.336e-31
Identity = 74/177 (41.81%), Postives = 104/177 (58.76%), Query Frame = 2
Query:   35 GSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTG--RCGTSL-DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            G L S SEQ+LVDCD S N GC GG    + +FI +N G+  E DYPYKA+ G+C   +K   V T+     V    E  LQ  +A N PV+V ++    +FQLY+ G      +C + + +H VTAVGYG+ +   YWI++NSWG+SWG+AGY  + R+        CGI  +++Y
Sbjct:  133 GKLYSFSEQQLVDCDASDN-GCEGGHPSNSLKFIQENNGLGLESDYPYKAVAGTC---KKVKNVATVTGSRRVTDGSETGLQTIIAENGPVAVGMDASRPSFQLYKKGTIYSDTKCRSRMMNHCVTAVGYGSNSNGKYWIIRNSWGTSWGDAGYFLLARD----SNNMCGIGRDSNY 301          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.204e-31
Identity = 75/182 (41.21%), Postives = 109/182 (59.89%), Query Frame = 2
Query:   32 TGSLISLSEQELVDC-DTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGI-FTGRC-GTSLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            T  LI LSEQ L+DC  ++   GC+GG M YAF+++ DNGG+ TEE YPY+     C  + +N+    + D+  +P   E+AL KAVA   P+SVA++    +FQ Y SGI +  +C    L+H V  VGYG E    +G  +W+VKNSWG  WG  GY+++ ++     +  CGIA  ++Y
Sbjct:  155 TERLIPLSEQNLLDCMGSNVTHGCSGGFMQYAFQYVKDNGGLATEESYPYRGQGRECRYHAENS-AANVRDFVQIP-GSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKRVHLNHAVLVVGYGFEGEESDGNSFWLVKNSWGEEWGMKGYMKLAKD----WSNHCGIATYSTY 330          
The following BLAST results are available for this feature:
BLAST of CX290466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CATH_PIG1.618e-3242.33Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_BOVIN2.113e-3242.33Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATLL_FASHE2.760e-3245.66Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CFAD_DICDI4.707e-3238.62Counting factor associated protein D OS=Dictyostel... [more]
CATH_HUMAN1.049e-3141.27Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
RD19A_ARATH1.370e-3140.64Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CATH_RAT1.370e-3141.27Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CYSP_PEA1.789e-3142.02Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
ACP1_ENTHI2.336e-3141.81Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
TEST2_RAT5.204e-3141.21Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02024E04SK IF1 Citrus clementina cDNA clone C02024E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290466 ID=CX290466; Name=CX290466; organism=Citrus clementina; type=EST; length=675bp
GAGGGCTGTACAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCAC
TATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGT
AATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGG
TATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTGTG
ACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGAT
GTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACC
CGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAAT
CGGGTATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACT
GCTGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAA
TTCATGGGGCAGTAGCTGGGGAGAGGCTGGCTATATTAGGATGGAGCGTA
ACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCA
TATCCCATAAAGAAAGGCCAAAATCCTCCCAACCCTGGACCGTCCCCTCC
ATCTCCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTG
AGAGCAACACTTGCTGCTGTGTCTT
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