CX290466

Overview
NameCX290466
Unique NameCX290466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.514e-30
Identity = 77/182 (42.31%), Postives = 106/182 (58.24%), Query Frame = 2
Query:   32 TGSLISLSEQELVDC-DTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGI-FTGRC-GTSLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            TG L+ LSEQ L+DC  ++    C+GG M  AF+++ DNGG+ TEE YPY      C  + +N+    + D+  +P   E+AL KAVA   P+SVA++    +FQ Y+SGI +  +C    L+H V  VGYG E    +G  YW+VKNSWG  WG  GYI+    +A      CGIA  A+Y
Sbjct:  155 TGRLVPLSEQNLLDCMGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPYIGPGRKCRYHAENS-AANVRDFVQIP-GREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKRVHLNHAVLVVGYGFEGEESDGNSYWLVKNSWGEEWGMKGYIK----IAKDWNNHCGIATLATY 330          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 76/192 (39.58%), Postives = 108/192 (56.25%), Query Frame = 2
Query:    8 VQGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQK-AVANQPVSVAIEGGGMAFQLYESGI---FTGRCG-TSLDHGVTAVGYGTENGAD------YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 550
            ++G+  + TG L   SEQEL+DCDT+ +  CNGGLMD A++ I D GG++ E +YPYKA    C  + +    V +  + D+P  +E A+Q+  +AN P+S+ I    M  Q Y  G+   +   C   +LDHGV  VGYG  +  +      YWIVKNSWG  WGE GY R+ R         CG++  A+
Sbjct:  427 IEGLYAVKTGELKEFSEQELLDCDTT-DSACNGGLMDNAYKAIKDIGGLEYEAEYPYKAKKNQCH-FNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAM--QFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRG-----DNTCGVSEMAT 609          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 78/187 (41.71%), Postives = 109/187 (58.29%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFT-GRCGTSLDHGVTAVGYGTENG-ADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            A++  +K +TG L+ LS Q +VDC  +  N GC+GG M  AF++     GI  E  YPY   +  C  ++++  VVT + + ++   DE AL+ AVA + PV V I G   +F+ Y+ G+++ G CG   DH V AVGYGT     DYWIVKNSWG+ WG+ GY+ M RN        C IA  AS+
Sbjct:  214 ALEAYHKQMTGRLLDLSPQNIVDCTRNLGNNGCSGGYMPTAFQYA-SRYGIAMESRYPYVGTEQRC-RWQQSIAVVTDNGFNEIQPGDELALKHAVAKRGPVVVGISGSKRSFRFYKDGVYSEGNCGRP-DHAVLAVGYGTHPSYGDYWIVKNSWGTDWGKDGYVYMARNRG----NMCHIASAASF 393          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 72/187 (38.50%), Postives = 106/187 (56.68%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCDT--------SYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGR-CGTSLDHGVTAVGYGTENGAD-------YWIVKNSWGSSWGEAGYIRM--ERNVAG 511
            A++G + + TG L+SLSEQ+LVDCD         S + GCNGGLM+ AFE+ +  GG+  E+DYPY   DG      ++  V ++ ++  V +N+++     + N P++VAI    M  Q Y  G+     C   L+HGV  VGYG+   +        YWI+KNSWG SWGE G+ ++   RN+ G
Sbjct:  164 ALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLMNSAFEYTLKTGGLMREKDYPYTGTDGGSCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINAAYM--QTYIGGVSCPYICSRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICG 348          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.373e-30
Identity = 87/186 (46.77%), Postives = 108/186 (58.06%), Query Frame = 2
Query:   32 TGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDD--YEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGI-FTGRCG-TSLDHGVTAVGYGTENGAD-----YWIVKN-SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 553
            TG LISL+EQ LVDC     NEGCNGG MD  F ++ +NGG+D+E  YPY   +G   T R N K    +D  + D+P + EK L KAVA   P+SVA     ++FQ Y+ GI F  RC    LDH +  VGY  E GAD     YW+VKN S G +WG  GYI+M ++        CGIA  ASY
Sbjct:   98 TGKLISLNEQNLVDCSGPQGNEGCNGGFMDNPFRYVQENGGLDSEASYPY---EGKVKTCRYNPKYSAANDTGFVDIP-SQEKDLAKAVATVGPISVAAGASHVSFQFYKKGIYFEPRCDPEGLDHAMLLVGYSYE-GADSDNNKYWLVKNSSEGKNWGMDGYIKMAKD----RRNNCGIATAASY 274          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.856e-29
Identity = 75/167 (44.91%), Postives = 96/167 (57.49%), Query Frame = 2
Query:   44 ISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 535
            + LSEQ+LVDCD   N GCNGGLM +AFE II  GGI  E  YPY  +DG C   +   + V +       L  EK L++ +  + PVSVAI+   +    Y+SG+    C     L+HGV  VGYG EN   YW +KNSWGS WGE G+ R++R+V       CGI
Sbjct:  178 LDLSEQQLVDCD-KVNNGCNGGLMSWAFEGIIRAGGISYEAPYPYTGVDGVC---KNTTRYVQLSGCYAYDLRSEKKLRQVLHEKGPVSVAIDVVDLTN--YKSGV-AKHCSVDHGLNHGVLLVGYGQENDVKYWTLKNSWGSDWGEQGFFRIKRDV-----NSCGI 332          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.730e-29
Identity = 74/173 (42.77%), Postives = 98/173 (56.65%), Query Frame = 2
Query:   26 IVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 544
            I+  SLI LSEQ+L+DCD   ++GC+GGLM  AF+ II  GG++ E DYPY+ I+ +C        V     Y+    ++ K L+    N P++VAI+   +    Y SGI T      L+H V  VGYG EN   YWI KNSWGS+WGE GY R  RN+       CG+  E
Sbjct:  165 IMHDSLIDLSEQQLLDCDR-VDQGCDGGLMHLAFQEIIRIGGVEHEIDYPYQGIEYACRLAPSKLAVRLSHCYQYDLRDERKLLELLYKNGPIAVAIDCVDIID--YRSGIATVCNDNGLNHAVLLVGYGIENDTPYWIFKNSWGSNWGENGYFRARRNI-----NACGMLNE 329          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 71/193 (36.79%), Postives = 105/193 (54.40%), Query Frame = 2
Query:    5 AVQGINKIVTGSLISLSEQELVDCD--------TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGR-CGTSLDHGVTAVGYGTENGA-------DYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 535
            A++G + + TG L  LSEQ+ VDCD         S + GCNGGLM  AF ++   GG+++E+DYPY   DG C  + K+  V ++ ++  V +++ +     + + P+++ I    M  Q Y  G+     CG  LDHGV  VGYG    A        YWI+KNSWG +WGE GY ++ R     +  KCG+
Sbjct:  169 ALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGLMTTAFSYLQKAGGLESEKDYPYTGSDGKC-KFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYM--QTYIGGVSCPYICGRHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICR--GSNVRNKCGV 356          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.417e-28
Identity = 73/192 (38.02%), Postives = 100/192 (52.08%), Query Frame = 2
Query:    8 VQGINKIVTGSLISLSEQELVDCD---------TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPYKAIDGSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCG-TSLDHGVTAVGYGTEN-----GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIA 538
            V+G + I    L+SLSEQ LVDCD          + +EGCNGGL   A+ +II NGGI TE  YPY A  G+   +        I ++  +P N+       V+  P+++A +   + +Q Y  G+F   C   SLDHG+  VGY  +N        YWIVKNSWG+ WGE GYI + R         CG++
Sbjct:  151 VEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAAD--AVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRG-----KNTCGVS 335          
BLAST of CX290466 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.851e-28
Identity = 66/168 (39.29%), Postives = 97/168 (57.74%), Query Frame = 2
Query:    8 VQGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGG--IDTEEDYPYKAIDGSCDTYRKNAKVV--TIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMER 499
            ++G  ++    L+SLSEQ LV CDT  + GCNGGLMD AF +I+++ G  + TE  YPY + +G     + N   +   I D+ D+P +++        N P+++A++    +F  Y  GI T      LDHGV  VGY   +   YWI+KNSW + WGE GYIR+E+
Sbjct:  159 IEGQWQVAGNPLVSLSEQMLVSCDT-IDSGCNGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDAE--SFMDYNGGILTSCTSKQLDHGVLLVGYNDNSNPPYWIIKNSWSNMWGEDGYIRIEK 323          
The following BLAST results are available for this feature:
BLAST of CX290466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
TEST2_MOUSE1.514e-3042.31Testin-2 OS=Mus musculus PE=2 SV=1[more]
CPR1_DROME2.583e-3039.58Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATL_BRUPA2.583e-3041.71Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
A494_ARATH2.583e-3038.50Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CATL6_HUMAN3.373e-3046.77Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
CATV_GVXN2.856e-2944.91Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CATV_NPVST3.730e-2942.77Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CYSP1_MAIZE4.871e-2936.79Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP1_DICDI1.417e-2838.02Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CYSP_TRYBB1.851e-2839.29Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]

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Properties
Property NameValue
Genbank descriptionC02024E04SK IF1 Citrus clementina cDNA clone C02024E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290466 ID=CX290466; Name=CX290466; organism=Citrus clementina; type=EST; length=675bp
GAGGGCTGTACAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCAC
TATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGT
AATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGG
TATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTGTG
ACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGAT
GTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACC
CGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAAT
CGGGTATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACT
GCTGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAA
TTCATGGGGCAGTAGCTGGGGAGAGGCTGGCTATATTAGGATGGAGCGTA
ACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCA
TATCCCATAAAGAAAGGCCAAAATCCTCCCAACCCTGGACCGTCCCCTCC
ATCTCCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTG
AGAGCAACACTTGCTGCTGTGTCTT
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