CX290473

Overview
NameCX290473
Unique NameCX290473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.770e-35
Identity = 74/166 (44.58%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK-VKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNS 495
            GLGG+GHM VK  K+ G +VTV+S+S  K+ EA+  LGAD ++VSSD   M A G SLD+IIDT    HP + Y++LLK+ G  +L+G  ++ + F    + +G K ++GS  G   +T+E+L +C    +  QIE + ++ VN+ALERL + DV+YRFV+D+  S
Sbjct:  188 GLGGVGHMGVKVAKSMGHHVTVISSSARKRGEAMDDLGADAYLVSSDAAAMAAAGDSLDYIIDTVPVHHPLEPYLALLKLDGKLILMGVINQPLSFISPMVMLGRKAITGSFIGSMAETEEVLNFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYRFVVDVAGS 353          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.770e-35
Identity = 75/166 (45.18%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG-FPSKVKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNS 495
            GLGG+GHM VK  KA G +VTV+S+S  K+ EAL  LGAD ++VSSD  +M+    SLD+IIDT    HP + Y+SLLK+ G  +L+G   + ++F    + +G K+++GS  G  K+  EMLE+C    +   IE + ++ +N A ERL K DV+YRFV+D+  S
Sbjct:  188 GLGGVGHMGVKIAKAMGHHVTVISSSDKKRAEALDHLGADDYLVSSDAARMQEAADSLDYIIDTVPVFHPLEPYLSLLKIDGKLILMGVVNTPLQFVSPMVMLGRKSITGSFIGSMKELAEMLEFCKEKDLSSTIEIVKMDYINTAFERLEKNDVRYRFVVDVAGS 353          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.770e-35
Identity = 82/167 (49.10%), Postives = 106/167 (63.47%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNI-GAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSL 498
            GLGGLGH+ VKFGKAFG+ VTV+S+S +K+EEAL  LGAD F+ S D E M A   ++D IIDT S  HP    +SLLK  G  V+VG P+     PA   I G K V+GS  G   + Q ML++   H I   +E + + +VN AL RL + DV+YRFVID+  +L
Sbjct:  186 GLGGLGHLGVKFGKAFGMKVTVISSSPAKREEALERLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAAPLQLPAIAIIDGGKRVAGSGGGSVAECQAMLDFAGEHGIAADVEVVAMGDVNAALGRLERNDVRYRFVIDVAGTL 352          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.145e-34
Identity = 75/166 (45.18%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG-FPSKVKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNS 495
            GLGG+GHM VK  KA G +VTV+S+S+ K+ EA+  LGAD ++VSSD   M A   SLD+IIDT    HP + Y++LLK+ G +VL+G     + F    + +G K ++GS  G   +T E+L++C    +  QIE + +  VNEAL+RL + DV+YRFV+D+  S
Sbjct:  188 GLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKHVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALDRLERNDVRYRFVVDVAGS 353          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.145e-34
Identity = 76/166 (45.78%), Postives = 107/166 (64.46%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG-FPSKVKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNS 495
            GLGG+GHM VK  KA G +VTV+S+S+ K+ EA+  LGAD ++VSSD   M A   SLD+IIDT    HP + Y++LLK+ G  VL+G     + F    + +G K ++GS  G   +T E+L++C    +  QIE + +  VNEALERL + DV+YRFV+D+  S
Sbjct:  188 GLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKLVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALERLERNDVRYRFVVDVAGS 353          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.266e-33
Identity = 78/167 (46.71%), Postives = 105/167 (62.87%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNI-GAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSL 498
            GLGGLGH+ VKFGKAFG+ VTV+S+S +K+ EAL  LGAD F+ S D E M A   ++D IIDT S  HP    +SLLK  G  V+VG P+     PA   I G K V+G+  G   + Q ML++   H I   +E + ++ VN AL RL + DV+YRFV+D+  ++
Sbjct:  186 GLGGLGHLGVKFGKAFGMKVTVISSSPAKRGEALGRLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAMPLQLPAYAIIEGGKRVAGNGVGSVAECQAMLDFAGEHGIAADVEVVAMDAVNAALGRLERNDVRYRFVVDVAGTM 352          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CADH1_EUCGU (Probable cinnamyl alcohol dehydrogenase 1 OS=Eucalyptus gunnii GN=CAD1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.685e-33
Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG-FPSKVKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNS 495
            GLGG+GHM VK  KA G +VTV+S+S  K+ EAL  LGAD ++VSSD   MK    SLD++ DT    HP + Y++LLK+ G  +L G   + ++F   S  +  ++++GS  G  K+T+EMLE+C    +  QIE I ++ VN ALERL K DV+YRFV+D+  S
Sbjct:  188 GLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYVFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQF--ISPMVMLESITGSFIGSMKETEEMLEFCKEKGLTSQIEVIKMDYVNTALERLEKNDVRYRFVVDVVGS 351          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.076e-32
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGAK--TVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVID 483
            G+GGLGHM +K   A G +V   +TS +K+E A +L GAD+ V S + ++M A  KS DFI++T +  H  D + +LLK  G   LVG P+    SP   N+  K   ++GS+ GG  +TQEML++CA H I   IE I  + +NEA ER+++ DVKYRFVID
Sbjct:  182 GIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL-GADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVID 343          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.472e-29
Identity = 71/163 (43.56%), Postives = 100/163 (61.35%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDI 486
            GLGGLGHM VK G A G +VTVLS S  K E+ L L GA  +  ++D +  + L    D I++T S +     Y++LL V G  V +G P      PA +L +  ++++GS  GG  +TQEML +CA H + P+IE I  + +N+A ER++  DV+YRFVIDI
Sbjct:  182 GLGGLGHMGVKLGAAMGADVTVLSQSLKKMEDGLRL-GAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDI 343          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.472e-29
Identity = 71/163 (43.56%), Postives = 100/163 (61.35%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDI 486
            GLGGLGHM VK G A G +VTVLS S  K E+ L L GA  +  ++D +  + L    D I++T S +     Y++LL V G  V +G P      PA +L +  ++++GS  GG  +TQEML +CA H + P+IE I  + +N+A ER++  DV+YRFVIDI
Sbjct:  182 GLGGLGHMGVKLGAAMGADVTVLSQSLKKMEDGLRL-GAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDI 343          
The following BLAST results are available for this feature:
BLAST of CX290473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CADH2_ORYSJ8.770e-3544.58Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]
CADH1_OCIBA8.770e-3545.18Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CAD8A_ORYSJ8.770e-3549.10Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH_SACOF1.145e-3445.18Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
CADH_MAIZE1.145e-3445.78Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
CAD8D_ORYSJ1.266e-3346.71Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CADH1_EUCGU3.685e-3346.39Probable cinnamyl alcohol dehydrogenase 1 OS=Eucal... [more]
YAHK_ECOLI9.076e-3245.40Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
ADHC_MYCTU2.472e-2943.56NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO2.472e-2943.56NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02024E11SK IF1 Citrus clementina cDNA clone C02024E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290473 ID=CX290473; Name=CX290473; organism=Citrus clementina; type=EST; length=721bp
GGACTTGGTGGTCTTGGTCACATGGCTGTGAAGTTCGGGAAGGCTTTTGG
ATTGAATGTAACAGTTCTCAGTACTAGCACTTCCAAGAAAGAGGAAGCCC
TGAGTCTTCTAGGTGCAGACAAATTTGTTGTGTCATCCGACCTTGAGCAG
ATGAAGGCCTTGGGTAAATCACTGGATTTCATCATCGACACAGCATCTGG
TGATCATCCATTTGATGCGTACATGTCACTGTTGAAGGTTGCTGGTGTTT
ATGTCCTAGTAGGATTTCCCAGCAAAGTTAAATTTAGTCCCGCTAGTCTC
AATATTGGTGCAAAAACTGTTTCCGGTAGTGTAACAGGTGGTACCAAGGA
CACGCAAGAAATGTTGGAGTATTGTGCTGCTCATAAGATTTACCCGCAGA
TAGAAACAATTCCAATTGAGAATGTGAATGAAGCTCTTGAGAGGCTGATA
AAGAGGGATGTAAAGTATCGATTTGTGATTGATATTCAGAACTCCTTGAA
ATAACAACATGGAGGCCAACCTCACTTTATAGCCACATATGGGAGAAGAG
AGATCATGTCCTTGTTCTCTGATTGGCGATTCTTGATACAATAAACCTCT
AAATCCTGCTAGTCATGCTTATGCTGATAATTTTATGCTAATTAAGCATC
ACTACTTGTTCTTTCCTTTCTTAGTTTTTGATTGTTTTGGGGAGACAATA
TGTTTAAGTACGTATCTTTTA
back to top