CX290475

Overview
NameCX290475
Unique NameCX290475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.494e-55
Identity = 101/163 (61.96%), Postives = 133/163 (81.60%), Query Frame = 1
Query:  190 KLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            K+I++R ++Y KEY E ++E IRL+REAKL G FYV  E KL+F+IRI+GI+ + PK +K+LQLLRL QI NGVF+++ KAT  +L  VEPY+ +GYPNL SVR+L+YKRGYGK+NKQRI L+DN+IIE+ALG++GIICMEDLIHEI TVGP F++ +    P
Sbjct:   48 KVIFSRAEKYVKEYREAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWP 210          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.088e-54
Identity = 103/164 (62.80%), Postives = 127/164 (77.44%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            RK+IY R K Y KEY    ++ IR+ R A+  G +YV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV +LIYKRGYGK+NK+RIALTDNS+I + LG+ GIICMED+IHEI TVG +F+  N    P
Sbjct:   45 RKIIYERAKAYHKEYRHMYRQEIRMARMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVHDLIYKRGYGKINKKRIALTDNSLIRKRLGKLGIICMEDVIHEIYTVGKNFKVVNNFLWP 208          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.210e-51
Identity = 103/185 (55.68%), Postives = 131/185 (70.81%), Query Frame = 1
Query:  103 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRR 657
            LKKKK                       R+LI  R + Y  EY + ++E I L R+A+ +G +YV  E KL+F+IRIRGIN + PK +KI+QLLRL QI NGVF+K NKAT  ML  VEPYVTYG PNLK+VREL+YKRG+GK+NKQRIAL+DN+IIE ALG++ I+ +EDLIHEI TVGP+F++
Sbjct:   21 LKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQ 205          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_ASHGO (60S ribosomal protein L7 OS=Ashbya gossypii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.072e-50
Identity = 93/164 (56.71%), Postives = 125/164 (76.22%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            R  I  R   Y KEY+  ++ +I+ KREAK  G +YV  + KL+F+IRI+GIN + PK +K+LQLLRL QI +GVF+KV KAT  +L  VEPYV YGYP+  ++R+L+YKRGYGK+NKQRIAL++NSI+E  LG++GII ++DLIHEI+TVGPHF++ N    P
Sbjct:   40 RAAILERNAAYHKEYETAERAVIQAKREAKANGSYYVESQPKLVFVIRIKGINKIAPKPRKVLQLLRLNQINSGVFVKVTKATTELLRLVEPYVAYGYPSYSTIRQLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHEIITVGPHFKQANNFLWP 203          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.185e-49
Identity = 93/160 (58.13%), Postives = 123/160 (76.88%), Query Frame = 1
Query:  199 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            + R ++Y  EY + ++E IRL R AK  G FYV P AK+ F+IRIRGIN V PK +K+L+LLRL Q+ NGVF+K+NKA++NML  VEPYV YG+PNLKS++ELIYKRG+ K++ QRI LT N ++E+ LG+ GIIC+ED+IHEI T G HF++ N S  P
Sbjct:   49 FKRAEKYVSEYHKTEREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWP 208          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.185e-49
Identity = 89/164 (54.27%), Postives = 127/164 (77.44%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            RK+I++R   Y KEY + ++ +I+ KR+AK  G +YV+ + KL+F++RI+GIN + PK +K+LQLLRL QI  GVF+++ KAT  +L   EPY+ YGYPNL ++R L+YKRG+GK+NKQRIAL+DN+IIE  LG++GI+ +EDLIHEI TVGP+F++ N    P
Sbjct:   39 RKIIFDRAAAYQKEYTDAERAVIKAKRDAKAAGSYYVDAQPKLVFVVRIKGINKIAPKPRKVLQLLRLTQINAGVFVRLTKATSELLKLAEPYIAYGYPNLSTIRHLVYKRGHGKINKQRIALSDNAIIEANLGKYGILSIEDLIHEIYTVGPNFKQANNFLWP 202          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.505e-49
Identity = 90/160 (56.25%), Postives = 121/160 (75.62%), Query Frame = 1
Query:  199 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            + R ++Y +EY   QKE +RLKREA+ KG FYV  E K+ F++RIRGIN + PK +K LQ+LRLRQI NGVF+K+NKATL +L  +EPYV +GYPN K++ +L+YKRGY K++  R+ +TDN+I+EQ+LG+  IIC+EDL HEI TVGPHF+       P
Sbjct:   47 FKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWP 206          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7B_YEAST (60S ribosomal protein L7-B OS=Saccharomyces cerevisiae GN=RPL7B PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 5.884e-49
Identity = 86/164 (52.44%), Postives = 125/164 (76.22%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            R +I  R   Y KEY+  ++ +I+ KR+AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++R+L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHF++ N    P
Sbjct:   41 RAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWP 204          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7A_YEAST (60S ribosomal protein L7-A OS=Saccharomyces cerevisiae GN=RPL7A PE=1 SV=3)

HSP 1 Score: 194.126 bits (492), Expect = 5.884e-49
Identity = 86/164 (52.44%), Postives = 125/164 (76.22%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            R +I  R   Y KEY+  ++ +I+ KR+AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++R+L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHF++ N    P
Sbjct:   41 RAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWP 204          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.981e-48
Identity = 93/157 (59.24%), Postives = 122/157 (77.71%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRR 657
            R+LI  R + Y  EY   ++E I L R+A+ +G ++V  E KL+F++RIRGIN + PK +KI+QLLRL QI NG+F+K NKA   ML  VEPYVTYG PN K+VRELIYKRG+GK+NKQRI L+DN+IIE ALG++ I+ +EDLIHEI TVGP+F++
Sbjct:   48 RELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQ 204          
The following BLAST results are available for this feature:
BLAST of CX290475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_YARLI5.494e-5561.9660S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_CHICK2.088e-5462.8060S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]
RL7C_SCHPO8.210e-5155.6860S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL7_ASHGO1.072e-5056.7160S ribosomal protein L7 OS=Ashbya gossypii GN=RPL... [more]
RL7_DICDI1.185e-4958.1360S ribosomal protein L7 OS=Dictyostelium discoide... [more]
RL7_DEBHA1.185e-4954.2760S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]
RL7_CAEEL4.505e-4956.2560S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7B_YEAST5.884e-4952.4460S ribosomal protein L7-B OS=Saccharomyces cerevi... [more]
RL7A_YEAST5.884e-4952.4460S ribosomal protein L7-A OS=Saccharomyces cerevi... [more]
RL7B_SCHPO4.981e-4859.2460S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC02024F01SK IF1 Citrus clementina cDNA clone C02024F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290475 ID=CX290475; Name=CX290475; organism=Citrus clementina; type=EST; length=693bp
ACGAGGGCCAGATCGCCTCCGTGAAGAAGATAGACGTCTAAAAGACCTCT
AAGAACAAAAGAGATGGCTGAAGCGGCAGCTGTTGTGGTACCAGAGTCAG
TGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGAAGCAG
GAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTCATTTA
CAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAAAGAAC
TCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATGTCAAC
CCAGAAGCTAAGCTTTTGTTTATCATCAGGATTCGCGGTATCAATGCTGT
TGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACAGATTT
TTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGCTGCAC
AGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAG
AGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTG
CTTTGACCGACAATTCTATCATTGAACAGGCTCTTGGGCAGCATGGAATT
ATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTT
CAGGAGGCAAAACACTTCCTATGGCCCTTCAGCTCAGGCACCA
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