CX290475

Overview
NameCX290475
Unique NameCX290475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.505e-48
Identity = 88/164 (53.66%), Postives = 122/164 (74.39%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            R  I  R   + KEY+  ++ +I  KREAK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL QI +G F+KV KAT  +L  +EPYV YGYP+  +VR+L+YKRG+GK+NKQRIAL+DN+I+E  LG+ GI+ ++DLIHEI+TVGPHF++ N    P
Sbjct:   41 RAAILERNAAHQKEYEAAERAVIDAKREAKASGSYYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWP 204          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.472e-47
Identity = 92/151 (60.93%), Postives = 119/151 (78.81%), Query Frame = 1
Query:  205 RTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQ-HGIICMEDLIHEILTVGPHFR 654
            R ++Y  EY + ++  I+L+R AK +  FYV  EAKL F++RIRGIN V PK +K+LQL RLRQI NGVF+K+NKAT+NML   EPY+T+GYPNLKSVRELIYKRG+ K N+QR+ +TDN +IE+ L Q H I C+EDL+HEI TVGP+F+
Sbjct:   56 RAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFK 206          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.356e-45
Identity = 87/161 (54.04%), Postives = 120/161 (74.53%), Query Frame = 1
Query:  184 TRKLIYNRTKQ-YAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQN 663
            TR+  + +T Q Y  EY    K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   ++ LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHF+  N
Sbjct:   45 TRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEAN 205          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.356e-45
Identity = 87/161 (54.04%), Postives = 120/161 (74.53%), Query Frame = 1
Query:  184 TRKLIYNRTKQ-YAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQN 663
            TR+  + +T Q Y  EY    K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   ++ LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHF+  N
Sbjct:   45 TRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEAN 205          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 88/169 (52.07%), Postives = 116/169 (68.64%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGPSAQAP 693
            RK  + R + +   Y + ++E IRL R AK KG  +V  E KLLF+IRI G+  + PK +K+L+LLRL +I N VF++ NKA   ML  VEPYV YG PNL SVRELIYKRG+GK+N QRIAL+DN++IE+ALG++ +I +ED+IHEI  VG HF+       P    P
Sbjct:   47 RKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTP 215          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.317e-32
Identity = 71/158 (44.94%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  205 RTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            R + +  E+  ++ ++IR+K+  K         ++ L+FIIRI+G N + PKTK+IL  L+L+ +F GVF K   +    L +V+PYVTYGYPN KSV++LIYK+G   +    + LTDN+IIEQALG+H I+ +EDL++EI  VG HFR      GP
Sbjct:   51 RPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGP 208          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.483e-31
Identity = 67/154 (43.51%), Postives = 101/154 (65.58%), Query Frame = 1
Query:  193 LIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 654
            L + R + +  +   ++++++RL+R         +  +  L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSVRELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+
Sbjct:   47 LRFKRLESFLHDSWRQKRDMVRLRRLEMKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQ 200          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.437e-31
Identity = 66/160 (41.25%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  199 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            + R + +  +   +Q++ +R++R         V  +  L F+IR+  I  V    K  +  L L+++F+GVF+KV   ++ ML  VEPYVT+G+PNLKSVRELI KRG  K+N + + LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+  ++   P
Sbjct:   49 FRRLESFVHDSWRQQRDKVRVQRLEVKPRALEVPDKHPLAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCP 208          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.437e-31
Identity = 67/154 (43.51%), Postives = 100/154 (64.94%), Query Frame = 1
Query:  193 LIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 654
            L + R + +  +   ++++ +RL+R         +  +  L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSVRELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+
Sbjct:   47 LRFKRLESFLHDSWRQKRDKVRLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQ 200          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30
Identity = 66/156 (42.31%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 654
            ++L + R + +  +   + ++ +RL+R      G  V  +  L F++RI  I+ V    ++ +  LRL++IF+GVF++V   T+  L  VEPYVT+G+PNLKSVRELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G +F+
Sbjct:   46 KELKFKRLEWFLHDSWRQLRDRVRLRRLEVKPHGLEVPDKHSLAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQ 201          
The following BLAST results are available for this feature:
BLAST of CX290475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_CANGA6.505e-4853.6660S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL7_DROME2.472e-4760.9360S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL72_PARTE1.356e-4554.0460S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE1.356e-4554.0460S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7A_SCHPO5.699e-4452.0760S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL71_ARATH1.317e-3244.9460S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL7L_PONAB2.483e-3143.5160S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_MOUSE9.437e-3141.2560S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_HUMAN9.437e-3143.5160S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_PIG4.684e-3042.3160S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC02024F01SK IF1 Citrus clementina cDNA clone C02024F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290475 ID=CX290475; Name=CX290475; organism=Citrus clementina; type=EST; length=693bp
ACGAGGGCCAGATCGCCTCCGTGAAGAAGATAGACGTCTAAAAGACCTCT
AAGAACAAAAGAGATGGCTGAAGCGGCAGCTGTTGTGGTACCAGAGTCAG
TGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGAAGCAG
GAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTCATTTA
CAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAAAGAAC
TCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATGTCAAC
CCAGAAGCTAAGCTTTTGTTTATCATCAGGATTCGCGGTATCAATGCTGT
TGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACAGATTT
TTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGCTGCAC
AGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAG
AGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTG
CTTTGACCGACAATTCTATCATTGAACAGGCTCTTGGGCAGCATGGAATT
ATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTT
CAGGAGGCAAAACACTTCCTATGGCCCTTCAGCTCAGGCACCA
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